Miyakogusa Predicted Gene

Lj1g3v4372200.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4372200.1 Non Chatacterized Hit- tr|I0Z7C8|I0Z7C8_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,31.67,3e-17,seg,NULL,CUFF.32330.1
         (489 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G58050.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   652   0.0  
AT2G41960.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   555   e-158

>AT3G58050.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT2G41960.1); Has 13384 Blast hits to 8116
           proteins in 546 species: Archae - 41; Bacteria - 766;
           Metazoa - 5596; Fungi - 1431; Plants - 589; Viruses -
           46; Other Eukaryotes - 4915 (source: NCBI BLink). |
           chr3:21492539-21497018 FORWARD LENGTH=1209
          Length = 1209

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/492 (64%), Positives = 366/492 (74%), Gaps = 31/492 (6%)

Query: 3   MPGLATSPSSCSLSANGFWAKNSDYVSYNQLEKFWSELPPQARQELLRIDKQSLFEQARK 62
           MPGLA    +    + GFW+K  D VSYNQL+KFWSEL P+ARQELL+IDKQ+LFEQARK
Sbjct: 1   MPGLAQR--NNDQYSFGFWSKEIDGVSYNQLQKFWSELSPKARQELLKIDKQTLFEQARK 58

Query: 63  NMYCSRCNGLLLEGFLQIVMYGKSLQQEGVGSHSPCNAPXXXXXXXXXXXXIMKGCEDGV 122
           NMYCSRCNGLLLEGFLQIVM+GKSL  EG   +SPCN              +  GC D +
Sbjct: 59  NMYCSRCNGLLLEGFLQIVMHGKSLHPEGSLGNSPCNKSGGSKYQYDCNAVVSNGCADEM 118

Query: 123 QDPSAHPWGGLTIARDGSLTLVNCYLFSKSLKGLQIVFDGXXXXXXXXXLLYPDACGGAG 182
           QDPS HPWGGLT  RDGSLTL++CYL++KSLKGLQ VFD          LLYPDACGG G
Sbjct: 119 QDPSVHPWGGLTTTRDGSLTLLDCYLYAKSLKGLQNVFDSAPARERERELLYPDACGGGG 178

Query: 183 RGWISQGIVSYGRGHGTRESCALHTARLSCDTLVDFWSALGEETRLSLLRMKEEDFIERL 242
           RGWISQGI S+GRGHGTRE+CALHTARLSCDTLVDFWSAL E+TR SLLRMKEEDF+ERL
Sbjct: 179 RGWISQGIASFGRGHGTRETCALHTARLSCDTLVDFWSALSEDTRQSLLRMKEEDFMERL 238

Query: 243 MYR-----------------------------FDSKRFCRDCRRNVIREFKELKELKRMR 273
            YR                             FDSKRFCRDCRRNVIREFKELKELKRMR
Sbjct: 239 RYRICYHSSYHILNCKMNRHFVVWTIQDVLTKFDSKRFCRDCRRNVIREFKELKELKRMR 298

Query: 274 REPRCSSWFCVADSAFQYEVSDDSIQADWRQTFADTSGVYHHFEWAVGTSEGKADILEFE 333
           REPRC++WFCVA++ FQYEVS DS++ADWR+TF++ +G YHHFEWA+G+ EGK DIL+FE
Sbjct: 299 REPRCTTWFCVANTTFQYEVSIDSVKADWRETFSENAGKYHHFEWAIGSGEGKCDILKFE 358

Query: 334 NVGLNGCVKASGLDLGDLNACFITLRAWRLDGRCSELCVKAHSLKGQQCVHCRLIVGDGY 393
           NVG+NG V+ +GL+L  LN+C+ITLRA++LDGR SE+  KAH+LKGQ CVH RL+VGDG+
Sbjct: 359 NVGMNGRVQVNGLNLRGLNSCYITLRAYKLDGRWSEVSAKAHALKGQNCVHGRLVVGDGF 418

Query: 394 VTITKGESISRFFXXXXXXXXXXXXXXXXXXXXXIDGECTRPQKHAKSPELAREFLLDAA 453
           V+I +GESI RFF                     +DGEC+RPQKHAKSPELAREFLLDAA
Sbjct: 419 VSIKRGESIRRFFEHAEEAEEEEDEDMMDKDGNELDGECSRPQKHAKSPELAREFLLDAA 478

Query: 454 TVIFKEQASLAL 465
           TVIFKEQ   A 
Sbjct: 479 TVIFKEQVEKAF 490


>AT2G41960.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G58050.1); Has 11991 Blast hits to 7260
           proteins in 458 species: Archae - 17; Bacteria - 481;
           Metazoa - 5028; Fungi - 1325; Plants - 615; Viruses -
           38; Other Eukaryotes - 4487 (source: NCBI BLink). |
           chr2:17514244-17519015 REVERSE LENGTH=1215
          Length = 1215

 Score =  555 bits (1429), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 270/463 (58%), Positives = 333/463 (71%), Gaps = 12/463 (2%)

Query: 3   MPGLATSPSSCSLSANGFWAKNSDYVSYNQLEKFWSELPPQARQELLRIDKQSLFEQARK 62
           MPGL T  +    S++GFW+++ D ++Y+QL++FWSEL  +AR ELLRIDKQ+LFEQARK
Sbjct: 9   MPGLTTHMNE-HYSSSGFWSEDDDGLTYDQLDQFWSELSSKARHELLRIDKQTLFEQARK 67

Query: 63  NMYCSRCNGLLLEGFLQIVMYGKSLQQEGVGSHSPCNAPXXXXXXXXXXXXIMKGCEDGV 122
           NM CSRC GLLLEGF QI+  G++  ++ +   S  N                + C    
Sbjct: 68  NMCCSRCLGLLLEGFAQILSAGRAAYEKRMMGPSKDNCKSNG----------TRKCTVAY 117

Query: 123 QDPSAHPWGGLTIARDGSLTLVNCYLFSKSLKGLQIVFDGXXXXXXXXXLLYPDACGGAG 182
           Q P  H WGGLT  R G +TL++C+L +K+ KGLQ VF+          LLYPDACGG G
Sbjct: 118 QSPPVHRWGGLTTTRSGCITLLDCFLTAKTFKGLQNVFESNRARERERELLYPDACGGGG 177

Query: 183 RGWISQGIVSYGRGHGTRESCALHTARLSCDTLVDFWSALGEETRLSLLRMKEEDFIERL 242
           R W+SQGI  +G+GHGTRE+C LHT RLSCDTLVDFWSAL E +R SLLRMKEEDF+ERL
Sbjct: 178 RVWLSQGIAGFGKGHGTRETCNLHTTRLSCDTLVDFWSALEEHSRQSLLRMKEEDFVERL 237

Query: 243 MYRFDSKRFCRDCRRNVIREFKELKELKRMRREPRCSSWFCVADSAFQYEVSDDSIQADW 302
            YRFD K+FCRDCRRNVIREFKELKELKR++R+PRC+ WFCVAD+AFQYEV  DS++ADW
Sbjct: 238 TYRFDCKKFCRDCRRNVIREFKELKELKRIQRDPRCTDWFCVADTAFQYEVDIDSVRADW 297

Query: 303 RQTFADTSGVYHHFEWAVGTSEGKADILEFENVGLNGCVKASGLDLGDLNACFITLRAWR 362
            Q F + +G YHHFEWA+GT EG++DILEF+ VG +   + +GLDL  L+ C+ITLRA++
Sbjct: 298 SQYFTENAG-YHHFEWAIGTGEGESDILEFKYVGNDRSARVNGLDLRGLHECYITLRAFK 356

Query: 363 LDGRCSELCVKAHSLKGQQCVHCRLIVGDGYVTITKGESISRFFXXXXXXXXXXXXXXXX 422
            +GR SE+ VKAH+L+GQQCVH RL+VGDG+V+I +GE I  FF                
Sbjct: 357 KNGRPSEISVKAHALRGQQCVHSRLVVGDGFVSIKRGECIRMFFEHAEEAEEEEDEVLID 416

Query: 423 XXXXXIDGECTRPQKHAKSPELAREFLLDAATVIFKEQASLAL 465
                +DGEC RPQKHAKSPELAREFLLDAATVIFKEQ   A 
Sbjct: 417 KDGNELDGECLRPQKHAKSPELAREFLLDAATVIFKEQVEKAF 459