Miyakogusa Predicted Gene

Lj1g3v4328790.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4328790.1 Non Chatacterized Hit- tr|Q8LFN8|Q8LFN8_ARATH
Putative uncharacterized protein OS=Arabidopsis
thalia,53.78,2e-18,WRC,WRC; seg,NULL,CUFF.32369.1
         (336 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G42040.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: WRC (Inter...    97   1e-20

>AT2G42040.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: WRC
           (InterPro:IPR014977); Has 219 Blast hits to 219 proteins
           in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3;
           Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes -
           1 (source: NCBI BLink). | chr2:17543282-17545063 FORWARD
           LENGTH=269
          Length = 269

 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/119 (53%), Positives = 70/119 (58%), Gaps = 39/119 (32%)

Query: 208 EGSRCSRVNGRGWRCCQPTLVGYSLCEHHLGKGRLRSMASVRNRSMKKEVQDLLPQPXXX 267
           EGSRCSRVNGRGWRCCQ TLVGYSLCEHHLGKGR+RSM                      
Sbjct: 165 EGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRVRSM---------------------- 202

Query: 268 XXXXXXXXXXLERKNKSGGADYPLGKSEKKAAVAVTKKRMKLGMVKARSMSSLMGQTNT 326
                         NKSGG     G  +K   V V KKR+KLGMVKARS+SSL+GQT+T
Sbjct: 203 --------------NKSGGGR---GGEKKAVVVEVKKKRVKLGMVKARSISSLLGQTST 244