Miyakogusa Predicted Gene

Lj1g3v4317680.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4317680.2 tr|G7KVD6|G7KVD6_MEDTR DNA polymerase delta small
subunit OS=Medicago truncatula GN=MTR_7g093210
PE=,86.54,0,DNA_pol_E_B,DNA polymerase alpha/epsilon, subunit B; DNA
POLYMERASE DELTA SUBUNIT 2,NULL; DNA POLYME,CUFF.32264.2
         (435 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G42120.2 | Symbols: POLD2 | DNA polymerase delta small subuni...   706   0.0  
AT2G42120.1 | Symbols: POLD2 | DNA polymerase delta small subuni...   701   0.0  

>AT2G42120.2 | Symbols: POLD2 | DNA polymerase delta small subunit |
           chr2:17563282-17565965 REVERSE LENGTH=440
          Length = 440

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/433 (75%), Positives = 379/433 (87%), Gaps = 2/433 (0%)

Query: 2   VMDRVQCSYEPLDEPFEIGKEMYRGQQYSQIYFARLHLMRTLLHSLVPHLKPNLPVCTVL 61
           + +R Q  Y  LDE FEI KEMYRGQQYSQIYFARLHLMRTLL+SL P  K +LPVC VL
Sbjct: 8   IHERKQSDYNSLDERFEIQKEMYRGQQYSQIYFARLHLMRTLLYSLAPTWKSHLPVCKVL 67

Query: 62  GLEEQAGKECVIVGTLYKHMKLKPCILDEYSKERSAVPLVKPHNFMHPDDHLILEDESGR 121
           GLE+  GKEC+IVGTL+KHMKLKPC+LDEYSKERS  PLVKPHNFMHPDD+LILEDESGR
Sbjct: 68  GLEK--GKECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLILEDESGR 125

Query: 122 VKLGGDLISPSVYVTGIVVAVHGKETEAGEFLVQDVLEAGLPPQIEFPLKSREDKYVVFV 181
           VKL G  +SP++YVTG+VVA+HGKET AGEF V+DVLEAGLPPQIE P+  +EDKYVV +
Sbjct: 126 VKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQEDKYVVLL 185

Query: 182 SGLSIGSSNSNPLQFQLLIDHITGHLGDEKEKSIASQTVRVVIAGNSVEIPSGLFNGQNM 241
           SGL IGS ++NPLQFQLL+DHITGHLGDE+E+ +A+Q V VVIAGNS E P  L NGQN+
Sbjct: 186 SGLCIGSKSANPLQFQLLVDHITGHLGDEEEQGLAAQIVHVVIAGNSFEFPRKLINGQNL 245

Query: 242 GSKDLSRISEPIKELDILLNQIAAGLPLDIMPGPSDPSNYSLPQQALHRCLFPGSSAYNT 301
            SKD S + EPIKELDI+L+QIAAG+ +DIMPG +DP+N++LPQQ L+RCLFPGSS YNT
Sbjct: 246 ASKDQSTLYEPIKELDIMLSQIAAGVSVDIMPGTNDPANFALPQQPLNRCLFPGSSPYNT 305

Query: 302 FTSCTNPHSFELDNIRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLGC 361
           F SCTNPHSF++DNIRFLGTSGQN+DDL KYSEAK KL+F+ERTLRWRHLAPTAPNTLGC
Sbjct: 306 FRSCTNPHSFDVDNIRFLGTSGQNIDDLGKYSEAKSKLDFVERTLRWRHLAPTAPNTLGC 365

Query: 362 YPYTDRDPFFIESCPHVYFIGNQDKYDTRVIKGSEGQLVRLICVPKFSETGVAVMLNLRD 421
           YP+TDRDPF IE+CPHVYF+GNQDKYD R+IKGSEGQLVRLIC+PKF ETG+AV +NLR+
Sbjct: 366 YPFTDRDPFLIETCPHVYFVGNQDKYDNRLIKGSEGQLVRLICIPKFCETGIAVAVNLRN 425

Query: 422 LECHALSFGTQFS 434
           LECH LSF TQ +
Sbjct: 426 LECHTLSFSTQIN 438


>AT2G42120.1 | Symbols: POLD2 | DNA polymerase delta small subunit |
           chr2:17563282-17565965 REVERSE LENGTH=441
          Length = 441

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/434 (75%), Positives = 379/434 (87%), Gaps = 3/434 (0%)

Query: 2   VMDRVQCSYEPL-DEPFEIGKEMYRGQQYSQIYFARLHLMRTLLHSLVPHLKPNLPVCTV 60
           + +R Q  Y  L DE FEI KEMYRGQQYSQIYFARLHLMRTLL+SL P  K +LPVC V
Sbjct: 8   IHERKQSDYNSLQDERFEIQKEMYRGQQYSQIYFARLHLMRTLLYSLAPTWKSHLPVCKV 67

Query: 61  LGLEEQAGKECVIVGTLYKHMKLKPCILDEYSKERSAVPLVKPHNFMHPDDHLILEDESG 120
           LGLE+  GKEC+IVGTL+KHMKLKPC+LDEYSKERS  PLVKPHNFMHPDD+LILEDESG
Sbjct: 68  LGLEK--GKECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLILEDESG 125

Query: 121 RVKLGGDLISPSVYVTGIVVAVHGKETEAGEFLVQDVLEAGLPPQIEFPLKSREDKYVVF 180
           RVKL G  +SP++YVTG+VVA+HGKET AGEF V+DVLEAGLPPQIE P+  +EDKYVV 
Sbjct: 126 RVKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQEDKYVVL 185

Query: 181 VSGLSIGSSNSNPLQFQLLIDHITGHLGDEKEKSIASQTVRVVIAGNSVEIPSGLFNGQN 240
           +SGL IGS ++NPLQFQLL+DHITGHLGDE+E+ +A+Q V VVIAGNS E P  L NGQN
Sbjct: 186 LSGLCIGSKSANPLQFQLLVDHITGHLGDEEEQGLAAQIVHVVIAGNSFEFPRKLINGQN 245

Query: 241 MGSKDLSRISEPIKELDILLNQIAAGLPLDIMPGPSDPSNYSLPQQALHRCLFPGSSAYN 300
           + SKD S + EPIKELDI+L+QIAAG+ +DIMPG +DP+N++LPQQ L+RCLFPGSS YN
Sbjct: 246 LASKDQSTLYEPIKELDIMLSQIAAGVSVDIMPGTNDPANFALPQQPLNRCLFPGSSPYN 305

Query: 301 TFTSCTNPHSFELDNIRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLG 360
           TF SCTNPHSF++DNIRFLGTSGQN+DDL KYSEAK KL+F+ERTLRWRHLAPTAPNTLG
Sbjct: 306 TFRSCTNPHSFDVDNIRFLGTSGQNIDDLGKYSEAKSKLDFVERTLRWRHLAPTAPNTLG 365

Query: 361 CYPYTDRDPFFIESCPHVYFIGNQDKYDTRVIKGSEGQLVRLICVPKFSETGVAVMLNLR 420
           CYP+TDRDPF IE+CPHVYF+GNQDKYD R+IKGSEGQLVRLIC+PKF ETG+AV +NLR
Sbjct: 366 CYPFTDRDPFLIETCPHVYFVGNQDKYDNRLIKGSEGQLVRLICIPKFCETGIAVAVNLR 425

Query: 421 DLECHALSFGTQFS 434
           +LECH LSF TQ +
Sbjct: 426 NLECHTLSFSTQIN 439