Miyakogusa Predicted Gene

Lj1g3v4317580.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4317580.1 tr|C1E1S5|C1E1S5_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_56977
,28.57,8e-19,seg,NULL; Nse4,Nse4; SUBFAMILY NOT NAMED,NULL;
UNCHARACTERIZED,Nse4,CUFF.32253.1
         (314 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G51130.1 | Symbols:  | Nse4, component of Smc5/6 DNA repair c...   280   8e-76
AT3G20760.1 | Symbols:  | Nse4, component of Smc5/6 DNA repair c...   254   6e-68

>AT1G51130.1 | Symbols:  | Nse4, component of Smc5/6 DNA repair
           complex | chr1:18939480-18941560 REVERSE LENGTH=403
          Length = 403

 Score =  280 bits (717), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 139/281 (49%), Positives = 183/281 (65%), Gaps = 2/281 (0%)

Query: 33  RRGLRSSYLAIKNRIHDEKDEIASPESKKFDLIFGEMESLHQLVTKPREQVADAQALLDI 92
           RR LRS YL+++N I+D KD++   +S KF  I   +E+LHQ V KPREQ+ADA+ALLDI
Sbjct: 59  RRILRSKYLSLQNEINDCKDDLMKIDSDKFSRIINAVENLHQQVRKPREQIADAEALLDI 118

Query: 93  TKSLVVTARAHGGGGLTPSSFVAHMLKEFGGKGGGATTSTEDCSRNLIAWKDIGVAVSYV 152
             +L+ + ++    G++P+ FV  ++  FG   G     T++ ++  + WKD+G AV   
Sbjct: 119 ANTLMSSVKSQSAHGVSPAEFVNALISGFGQ--GSLGIDTDETAQVSLKWKDLGFAVCST 176

Query: 153 FGGGYGCSTMIGPIDAXXXXXXXXXXXXXXXSIELARPEELGGGISEEKTDTDKNMLTMF 212
                GCSTM+GP+D                  E  RP+E+    SEEKTDTDKNM  MF
Sbjct: 177 VLVSCGCSTMLGPMDTELKQRKRAPNRKRTKPGEGVRPDEVDDSQSEEKTDTDKNMTIMF 236

Query: 213 NILKKNRVVRLENLVLNRNSFAQTVENLFALSFLVKDGRAEIRVNEAGQQLVLPRNAPAA 272
           NIL K + V+LENLVLNR SFAQTVENLFALSFL KDGR EI V+++G    +PRNAP A
Sbjct: 237 NILGKKKRVQLENLVLNRRSFAQTVENLFALSFLAKDGRVEIIVDKSGSHFAMPRNAPDA 296

Query: 273 NAVLTKDVAFSHFVFRFDFNDWKLMVSTVGVGEELMPDRNS 313
           N V++ +V ++HFVFR DF DWKLM   V +GEELMP R +
Sbjct: 297 NVVMSGEVIYNHFVFRLDFKDWKLMSEMVPLGEELMPHRQT 337


>AT3G20760.1 | Symbols:  | Nse4, component of Smc5/6 DNA repair
           complex | chr3:7257187-7258891 REVERSE LENGTH=383
          Length = 383

 Score =  254 bits (648), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 135/287 (47%), Positives = 183/287 (63%), Gaps = 10/287 (3%)

Query: 33  RRGLRSSYLAIKNRIHDEKDEIASPESKKFDLIFGEMESLHQLVTKPREQVADAQALLDI 92
           RR +RS YLA+ ++I D KD++   +S KF+ I  E+E+LHQ V KPREQ+ADA+ALLD+
Sbjct: 62  RRAIRSQYLALTHKIKDAKDDLTKIDSNKFNSIINEVENLHQKVRKPREQIADAEALLDL 121

Query: 93  TKSLVVTARAHGG-GGLTPSSFVAHMLKEFGGKGGGATTSTEDCSRNL---IAWKDIGVA 148
           T S+V + ++    GG++P+ FV  ++  FG      T+   D   N    + WKD+G  
Sbjct: 122 TNSVVSSVKSQSAHGGVSPAEFVNALINGFG-----KTSLRIDADENTQVSMKWKDLGFT 176

Query: 149 VSYVFGGGYGCSTMIGPIDAXXXXXXXXXXXXXXXSIEL-ARPEELGGGISEEKTDTDKN 207
           V        GC+TM+GP+ +                     +PEE+    +E+K+DTD N
Sbjct: 177 VCSTVLVSCGCTTMMGPMYSEMKQRKSRVGNRKRTKPGAGVKPEEVDDTEAEKKSDTDNN 236

Query: 208 MLTMFNILKKNRVVRLENLVLNRNSFAQTVENLFALSFLVKDGRAEIRVNEAGQQLVLPR 267
           M  MFNIL+KN+ V++ENLVLNR SFAQT EN+FALSFLVKDGR EI V+  G   V PR
Sbjct: 237 MAVMFNILRKNKRVKIENLVLNRKSFAQTAENMFALSFLVKDGRVEITVDNNGSHFVEPR 296

Query: 268 NAPAANAVLTKDVAFSHFVFRFDFNDWKLMVSTVGVGEELMPDRNSQ 314
           NAPAAN VL+ +VA++HFV RFD+ DW+ M   V VGEELMP R ++
Sbjct: 297 NAPAANLVLSGEVAYNHFVLRFDYKDWEPMSKMVAVGEELMPLRETK 343