Miyakogusa Predicted Gene

Lj1g3v4317560.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4317560.1 Non Chatacterized Hit- tr|D7LI27|D7LI27_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,36.78,0.000000000000002,DUF761,Protein of unknown function
DUF761, plant; seg,NULL,CUFF.32251.1
         (188 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G06790.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   123   7e-29
AT3G57950.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   118   3e-27
AT2G42180.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    82   2e-16

>AT5G06790.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 9 plant structures; EXPRESSED DURING:
           LP.04 four leaves visible, LP.02 two leaves visible,
           petal differentiation and expansion stage, D bilateral
           stage; BEST Arabidopsis thaliana protein match is:
           unknown protein (TAIR:AT3G57950.1); Has 1807 Blast hits
           to 1807 proteins in 277 species: Archae - 0; Bacteria -
           0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses -
           0; Other Eukaryotes - 339 (source: NCBI BLink). |
           chr5:2098088-2098717 REVERSE LENGTH=209
          Length = 209

 Score =  123 bits (309), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 80/186 (43%), Positives = 112/186 (60%), Gaps = 27/186 (14%)

Query: 24  MKLKRIIHTLVVSHLCRIIRALSKFKAVIVEIFKD---NHQTIHFPLYP---SQKKRNKI 77
           MKLK +I TL++S +CR++R +S+  +++V + +    N  ++   LYP   S+K++N I
Sbjct: 28  MKLKSLIQTLIISQVCRLLREISRVSSILVRVLRKKQYNFLSVSSLLYPKRVSKKQKNNI 87

Query: 78  IFGSFRLHYNWCSSKSSHVLPV--PQRVYEGLFDA-------------TTQQDGEDCPDS 122
           +FGSFRLHYN+CSS   HV+PV  P R+ E L+ A             T   DG D  D 
Sbjct: 88  LFGSFRLHYNFCSS---HVVPVSAPVRLPEELYLAHLVHESTWESMYSTESMDGRDDDDQ 144

Query: 123 E-SELAGYLRWLEEKKVQGGDDVKEEKEVNENIDMLAEMFIAHCHEKFRLEKQESDRRFQ 181
           E S+L+ YLR LE+K   G    +E + +   ID LA+ FIA+CHEKF LEK +S RR Q
Sbjct: 145 EPSQLSSYLRQLEDKVKDG--QEEETETMMNEIDKLADRFIANCHEKFMLEKVDSYRRSQ 202

Query: 182 ERLARS 187
             L RS
Sbjct: 203 GTLNRS 208


>AT3G57950.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4
           anthesis, C globular stage, petal differentiation and
           expansion stage; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT2G42180.1); Has 81 Blast
           hits to 81 proteins in 11 species: Archae - 0; Bacteria
           - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0;
           Other Eukaryotes - 0 (source: NCBI BLink). |
           chr3:21460423-21460968 FORWARD LENGTH=181
          Length = 181

 Score =  118 bits (295), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/175 (44%), Positives = 104/175 (59%), Gaps = 22/175 (12%)

Query: 24  MKLKRIIHTLVVSHLCRIIRALSKFKAVIVEIFK---DNHQTIHFPLYPSQKKRN--KII 78
           MKLK +I  L+   L R +RAL+K K++ +EI K   +N +     L+P++  +N  KI 
Sbjct: 19  MKLKTLIQNLLTHPLYRFLRALAKAKSIFLEISKHNSNNKKRKLMMLFPTKASKNQRKIF 78

Query: 79  FGSFRLHYNWCSSKSSHVLPVPQRVYEGLFDATTQQDGEDCPDSESELAGYLRWLEEKKV 138
           FGSFRLHYNWCSS    V              ++  +GE+  DS+  L+GYL WLE KK 
Sbjct: 79  FGSFRLHYNWCSSHVVPVPQPFPF-------PSSYINGEEEDDSQ--LSGYLEWLEHKKF 129

Query: 139 QGGDDVKE-----EKEVNENIDMLAEMFIAHCHEKFRLEKQESDRRFQERLARSM 188
              DDV+E         +++ID LA+MFIA+CHEKF LEK ES RRFQE L R +
Sbjct: 130 ---DDVEEIGDVVADGGDDDIDHLADMFIANCHEKFLLEKVESYRRFQEMLERGL 181


>AT2G42180.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G57950.1); Has 35333 Blast hits to 34131
           proteins in 2444 species: Archae - 798; Bacteria -
           22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
           - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
           chr2:17581133-17581633 REVERSE LENGTH=166
          Length = 166

 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 95/173 (54%), Gaps = 29/173 (16%)

Query: 25  KLKRIIHTLVVSHLCRIIRALSKFKAVIVEIFKDNHQTIHFPLYPSQK---KRNKIIFGS 81
            LK +   L+   L R++R+LS+ ++V++EI K N + +   ++ + K    ++ I FGS
Sbjct: 14  NLKTLFINLITHSLYRLLRSLSRARSVLIEISKHNKKRLFMMMFYTTKSSMNQHNIFFGS 73

Query: 82  FRLHYNWCSSKSSHVLPVPQRVYEGLFDATTQQDGEDCPDSESELAGYLRWLEEKKVQGG 141
                      S  V+PV +      F  +     ED  + ES+   YL+WLEE+ V   
Sbjct: 74  -----------SHVVVPVTKP-----FPFSLDGHVEDEDNLESQ---YLQWLEER-VDEN 113

Query: 142 DDVKEEKEVNE------NIDMLAEMFIAHCHEKFRLEKQESDRRFQERLARSM 188
           +++ +++ V E      +ID LA+ FIA CHEKF LEK ES RRFQ+ LARS+
Sbjct: 114 NNINDDQSVGERDVGDDDIDRLADKFIARCHEKFLLEKVESYRRFQDMLARSL 166