Miyakogusa Predicted Gene
- Lj1g3v4317470.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4317470.1 Non Chatacterized Hit- tr|D7FN41|D7FN41_ECTSI
Uncharacterized protein OS=Ectocarpus siliculosus
GN=U,47.67,7e-16,RRM_1,RNA recognition motif domain; RNA-binding
domain, RBD,NULL; RNA recognition motif,RNA recognit,CUFF.32238.1
(337 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 182 3e-46
AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 182 3e-46
AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 179 2e-45
AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 179 2e-45
AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 179 2e-45
AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 179 2e-45
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 179 2e-45
AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 168 4e-42
AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 168 4e-42
AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 113 2e-25
AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 113 2e-25
AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing... 102 3e-22
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 101 9e-22
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 100 1e-21
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 100 1e-21
AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 99 6e-21
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 94 1e-19
AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 94 1e-19
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 94 1e-19
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 94 1e-19
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 94 2e-19
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 93 3e-19
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 92 4e-19
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 92 7e-19
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 92 7e-19
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 91 8e-19
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 91 8e-19
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 91 1e-18
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 91 1e-18
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 91 1e-18
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 91 1e-18
AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 90 2e-18
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 90 2e-18
AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 90 2e-18
AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 89 3e-18
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 88 7e-18
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 87 2e-17
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 86 3e-17
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 86 4e-17
AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 85 6e-17
AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 85 6e-17
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 85 9e-17
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 84 1e-16
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 84 2e-16
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 84 2e-16
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 84 2e-16
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 84 2e-16
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 84 2e-16
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 83 2e-16
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 82 4e-16
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 81 1e-15
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 78 8e-15
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 77 2e-14
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 76 3e-14
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 76 4e-14
AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 76 4e-14
AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 5e-14
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 75 6e-14
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 72 5e-13
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 7e-13
AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 8e-13
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 70 2e-12
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 70 2e-12
AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 2e-12
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 70 2e-12
AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 4e-12
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 69 5e-12
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 66 3e-11
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 66 3e-11
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 66 3e-11
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 65 7e-11
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 64 1e-10
AT2G47310.1 | Symbols: | flowering time control protein-related... 64 1e-10
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 64 2e-10
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 64 2e-10
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 63 2e-10
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 63 2e-10
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 63 2e-10
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 63 3e-10
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 62 4e-10
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 62 6e-10
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 62 6e-10
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 62 6e-10
AT1G29400.2 | Symbols: AML5, ML5 | MEI2-like protein 5 | chr1:10... 61 9e-10
AT1G29400.1 | Symbols: AML5, ML5 | MEI2-like protein 5 | chr1:10... 61 9e-10
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 61 1e-09
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 60 2e-09
AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 3e-09
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 60 3e-09
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 59 3e-09
AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 3e-09
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 59 3e-09
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT2G42890.3 | Symbols: AML2, ML2 | MEI2-like 2 | chr2:17850632-1... 59 4e-09
AT2G42890.2 | Symbols: AML2, ML2 | MEI2-like 2 | chr2:17850632-1... 59 4e-09
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT2G42890.1 | Symbols: AML2, ML2 | MEI2-like 2 | chr2:17850077-1... 59 5e-09
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 59 5e-09
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 59 7e-09
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 59 7e-09
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 59 7e-09
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 58 7e-09
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 58 7e-09
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 1e-08
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 1e-08
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 1e-08
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 1e-08
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 57 2e-08
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 57 2e-08
AT3G54770.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 56 3e-08
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 56 4e-08
AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like... 56 4e-08
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 5e-08
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 6e-08
AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 8e-08
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 8e-08
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 54 1e-07
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 54 2e-07
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 53 3e-07
AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like ... 53 4e-07
AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 4e-07
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 52 6e-07
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 52 6e-07
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 52 6e-07
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 9e-07
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 51 1e-06
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 51 1e-06
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 51 1e-06
AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT2G43370.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 3e-06
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 4e-06
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 5e-06
AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 49 6e-06
AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 49 6e-06
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 48 8e-06
>AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/254 (40%), Positives = 152/254 (59%), Gaps = 14/254 (5%)
Query: 1 MEDLKKRKLEEATNGGFT-----------SVEDLRLLIEPLAKPQLVDLLAKLGSQYPSI 49
M+ +KKRKL+E NG T S +D R +IE QL+DLL + ++P +
Sbjct: 1 MDMMKKRKLDENGNGLNTNGGGTIGPTRLSPQDARKIIERFTTDQLLDLLQEAIVRHPDV 60
Query: 50 AEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGF 109
E ++ A +D RKLF+RGLA +T++E L + F +G++EE VI DK TGKS+GYGF
Sbjct: 61 LESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGF 120
Query: 110 ITYKNMESTQAALRAPSKLIDGRLAACNLACEGLSGPSSAL-DVSQRKLYIGSLSPEVTS 168
+T+ +++ AL+ PSK IDGR+ LA G G S + D+S RK+Y+ ++ ++ +
Sbjct: 121 VTFMHVDGALLALKEPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPA 180
Query: 169 EVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVK 228
+ LL+ F +G++EEG + +DK T SRGF YKT E A+ A+ DP K + G+ + K
Sbjct: 181 DRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCK 240
Query: 229 FA--GAHKGKTGQP 240
A G GK G P
Sbjct: 241 LAVDGKKGGKPGMP 254
>AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/254 (40%), Positives = 152/254 (59%), Gaps = 14/254 (5%)
Query: 1 MEDLKKRKLEEATNGGFT-----------SVEDLRLLIEPLAKPQLVDLLAKLGSQYPSI 49
M+ +KKRKL+E NG T S +D R +IE QL+DLL + ++P +
Sbjct: 1 MDMMKKRKLDENGNGLNTNGGGTIGPTRLSPQDARKIIERFTTDQLLDLLQEAIVRHPDV 60
Query: 50 AEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGF 109
E ++ A +D RKLF+RGLA +T++E L + F +G++EE VI DK TGKS+GYGF
Sbjct: 61 LESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGF 120
Query: 110 ITYKNMESTQAALRAPSKLIDGRLAACNLACEGLSGPSSAL-DVSQRKLYIGSLSPEVTS 168
+T+ +++ AL+ PSK IDGR+ LA G G S + D+S RK+Y+ ++ ++ +
Sbjct: 121 VTFMHVDGALLALKEPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPA 180
Query: 169 EVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVK 228
+ LL+ F +G++EEG + +DK T SRGF YKT E A+ A+ DP K + G+ + K
Sbjct: 181 DRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCK 240
Query: 229 FA--GAHKGKTGQP 240
A G GK G P
Sbjct: 241 LAVDGKKGGKPGMP 254
>AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 142/243 (58%), Gaps = 19/243 (7%)
Query: 7 RKLEEATNGGFTSVED-----LRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADP 61
++E A G + ED ++ L+EP +K Q++ LL + ++ +A I+ +A DP
Sbjct: 78 NRIEAAATSGSGNQEDDDDEPIQDLLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDP 137
Query: 62 VHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAA 121
VHRK+FV GL W+T +ETL AF+++GEIE+ ++DK +GKS+GYGFI YK+ + A
Sbjct: 138 VHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNA 197
Query: 122 LRAPSKLIDGRLAACNLACEG--------------LSGPSSALDVSQRKLYIGSLSPEVT 167
L+ P K I R+ AC LA +G S + +Q+K+Y+ ++ E+
Sbjct: 198 LKQPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELD 257
Query: 168 SEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIV 227
+ LL FF + GEIEEG + DK T +GF YK++E+AK+A+++P KT G +
Sbjct: 258 PQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHC 317
Query: 228 KFA 230
+ A
Sbjct: 318 QKA 320
>AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 142/243 (58%), Gaps = 19/243 (7%)
Query: 7 RKLEEATNGGFTSVED-----LRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADP 61
++E A G + ED ++ L+EP +K Q++ LL + ++ +A I+ +A DP
Sbjct: 78 NRIEAAATSGSGNQEDDDDEPIQDLLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDP 137
Query: 62 VHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAA 121
VHRK+FV GL W+T +ETL AF+++GEIE+ ++DK +GKS+GYGFI YK+ + A
Sbjct: 138 VHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNA 197
Query: 122 LRAPSKLIDGRLAACNLACEG--------------LSGPSSALDVSQRKLYIGSLSPEVT 167
L+ P K I R+ AC LA +G S + +Q+K+Y+ ++ E+
Sbjct: 198 LKQPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELD 257
Query: 168 SEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIV 227
+ LL FF + GEIEEG + DK T +GF YK++E+AK+A+++P KT G +
Sbjct: 258 PQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHC 317
Query: 228 KFA 230
+ A
Sbjct: 318 QKA 320
>AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 142/243 (58%), Gaps = 19/243 (7%)
Query: 7 RKLEEATNGGFTSVED-----LRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADP 61
++E A G + ED ++ L+EP +K Q++ LL + ++ +A I+ +A DP
Sbjct: 78 NRIEAAATSGSGNQEDDDDEPIQDLLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDP 137
Query: 62 VHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAA 121
VHRK+FV GL W+T +ETL AF+++GEIE+ ++DK +GKS+GYGFI YK+ + A
Sbjct: 138 VHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNA 197
Query: 122 LRAPSKLIDGRLAACNLACEG--------------LSGPSSALDVSQRKLYIGSLSPEVT 167
L+ P K I R+ AC LA +G S + +Q+K+Y+ ++ E+
Sbjct: 198 LKQPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELD 257
Query: 168 SEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIV 227
+ LL FF + GEIEEG + DK T +GF YK++E+AK+A+++P KT G +
Sbjct: 258 PQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHC 317
Query: 228 KFA 230
+ A
Sbjct: 318 QKA 320
>AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 142/243 (58%), Gaps = 19/243 (7%)
Query: 7 RKLEEATNGGFTSVED-----LRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADP 61
++E A G + ED ++ L+EP +K Q++ LL + ++ +A I+ +A DP
Sbjct: 78 NRIEAAATSGSGNQEDDDDEPIQDLLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDP 137
Query: 62 VHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAA 121
VHRK+FV GL W+T +ETL AF+++GEIE+ ++DK +GKS+GYGFI YK+ + A
Sbjct: 138 VHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNA 197
Query: 122 LRAPSKLIDGRLAACNLACEG--------------LSGPSSALDVSQRKLYIGSLSPEVT 167
L+ P K I R+ AC LA +G S + +Q+K+Y+ ++ E+
Sbjct: 198 LKQPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELD 257
Query: 168 SEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIV 227
+ LL FF + GEIEEG + DK T +GF YK++E+AK+A+++P KT G +
Sbjct: 258 PQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHC 317
Query: 228 KFA 230
+ A
Sbjct: 318 QKA 320
>AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 142/243 (58%), Gaps = 19/243 (7%)
Query: 7 RKLEEATNGGFTSVED-----LRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADP 61
++E A G + ED ++ L+EP +K Q++ LL + ++ +A I+ +A DP
Sbjct: 78 NRIEAAATSGSGNQEDDDDEPIQDLLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDP 137
Query: 62 VHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAA 121
VHRK+FV GL W+T +ETL AF+++GEIE+ ++DK +GKS+GYGFI YK+ + A
Sbjct: 138 VHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNA 197
Query: 122 LRAPSKLIDGRLAACNLACEG--------------LSGPSSALDVSQRKLYIGSLSPEVT 167
L+ P K I R+ AC LA +G S + +Q+K+Y+ ++ E+
Sbjct: 198 LKQPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELD 257
Query: 168 SEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIV 227
+ LL FF + GEIEEG + DK T +GF YK++E+AK+A+++P KT G +
Sbjct: 258 PQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHC 317
Query: 228 KFA 230
+ A
Sbjct: 318 QKA 320
>AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 128/208 (61%), Gaps = 8/208 (3%)
Query: 26 LIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQ 85
L+EP +K QL+ LL + ++ +A I+ +A D VHRK+FV GL W+T +++L AF+
Sbjct: 90 LLEPFSKDQLLILLKEAAERHRDVANRIRIVADEDLVHRKIFVHGLGWDTKADSLIDAFK 149
Query: 86 EHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAPSKLIDGRLAACNLACEG--- 142
++GEIE+ + DK +G+S+GYGFI +K+ + AL+ P K I R+ AC LA G
Sbjct: 150 QYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLASIGPVQ 209
Query: 143 ---LSGPSSALD--VSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRG 197
+ P+ + QRK+Y+ ++S ++ + LL FF R GEIEEG + DK T +G
Sbjct: 210 GNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKG 269
Query: 198 FGFVTYKTTEAAKKAIDDPEKTLGGRTI 225
F Y++ E+AKKA+++P KT G +
Sbjct: 270 FALFVYRSLESAKKALEEPHKTFEGHVL 297
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%)
Query: 60 DPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQ 119
+ V RK++V ++ + + L F GEIEEG + DKATG+ +G+ Y+++ES +
Sbjct: 223 ENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAK 282
Query: 120 AALRAPSKLIDGRLAACNLACEG 142
AL P K +G + C+ A +G
Sbjct: 283 KALEEPHKTFEGHVLHCHKANDG 305
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 151 DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAK 210
D+ RK+++ L + ++ L+ F ++GEIE+ DK + S+G+GF+ +K+ A+
Sbjct: 124 DLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGAR 183
Query: 211 KAIDDPEKTLGGRTIIVKFA 230
A+ P+K +G R + A
Sbjct: 184 NALKQPQKKIGTRMTACQLA 203
>AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 128/208 (61%), Gaps = 8/208 (3%)
Query: 26 LIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQ 85
L+EP +K QL+ LL + ++ +A I+ +A D VHRK+FV GL W+T +++L AF+
Sbjct: 90 LLEPFSKDQLLILLKEAAERHRDVANRIRIVADEDLVHRKIFVHGLGWDTKADSLIDAFK 149
Query: 86 EHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAPSKLIDGRLAACNLACEG--- 142
++GEIE+ + DK +G+S+GYGFI +K+ + AL+ P K I R+ AC LA G
Sbjct: 150 QYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLASIGPVQ 209
Query: 143 ---LSGPSSALD--VSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRG 197
+ P+ + QRK+Y+ ++S ++ + LL FF R GEIEEG + DK T +G
Sbjct: 210 GNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKG 269
Query: 198 FGFVTYKTTEAAKKAIDDPEKTLGGRTI 225
F Y++ E+AKKA+++P KT G +
Sbjct: 270 FALFVYRSLESAKKALEEPHKTFEGHVL 297
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%)
Query: 60 DPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQ 119
+ V RK++V ++ + + L F GEIEEG + DKATG+ +G+ Y+++ES +
Sbjct: 223 ENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAK 282
Query: 120 AALRAPSKLIDGRLAACNLACEG 142
AL P K +G + C+ A +G
Sbjct: 283 KALEEPHKTFEGHVLHCHKANDG 305
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 151 DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAK 210
D+ RK+++ L + ++ L+ F ++GEIE+ DK + S+G+GF+ +K+ A+
Sbjct: 124 DLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGAR 183
Query: 211 KAIDDPEKTLGGRTIIVKFA 230
A+ P+K +G R + A
Sbjct: 184 NALKQPQKKIGTRMTACQLA 203
>AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9388571-9390450 REVERSE LENGTH=343
Length = 343
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 74/122 (60%)
Query: 21 EDLRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETL 80
E+LR L++P +K QLVDL+ SI + A D HRK+FV GL W T+ ETL
Sbjct: 61 EELRELLQPYSKDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIFVYGLPWETTRETL 120
Query: 81 CAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAPSKLIDGRLAACNLAC 140
F+ +GEIEE V+ DKATGK++G+GF+ +K + + AL+ P K I R A C LA
Sbjct: 121 VGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNRTATCQLAS 180
Query: 141 EG 142
G
Sbjct: 181 MG 182
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 151 DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAK 210
DV+ RK+++ L E T E L+ F +GEIEE +V DK T ++GFGFV +KT + AK
Sbjct: 100 DVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAK 159
Query: 211 KAIDDPEKTLGGRTIIVKFAG---AHKGKTGQPPFPAGVPMAAL 251
+A+ +P+K + RT + A A GK P P + M ++
Sbjct: 160 EALKEPKKRILNRTATCQLASMGPAASGKGHDQPGPVKISMGSM 203
>AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9389407-9390450 REVERSE LENGTH=347
Length = 347
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 74/122 (60%)
Query: 21 EDLRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETL 80
E+LR L++P +K QLVDL+ SI + A D HRK+FV GL W T+ ETL
Sbjct: 61 EELRELLQPYSKDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIFVYGLPWETTRETL 120
Query: 81 CAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAPSKLIDGRLAACNLAC 140
F+ +GEIEE V+ DKATGK++G+GF+ +K + + AL+ P K I R A C LA
Sbjct: 121 VGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNRTATCQLAS 180
Query: 141 EG 142
G
Sbjct: 181 MG 182
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 151 DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAK 210
DV+ RK+++ L E T E L+ F +GEIEE +V DK T ++GFGFV +KT + AK
Sbjct: 100 DVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAK 159
Query: 211 KAIDDPEKTLGGRTIIVKFAG---AHKGKTGQPPFPAGVPMAAL 251
+A+ +P+K + RT + A A GK P P + M ++
Sbjct: 160 EALKEPKKRILNRTATCQLASMGPAASGKGHDQPGPVKISMGSM 203
>AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8383856-8386604 FORWARD LENGTH=613
Length = 613
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 72/121 (59%)
Query: 21 EDLRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETL 80
ED++ L+ +K +LV+L+ K + + I A D R +FVRG W+T+ E L
Sbjct: 365 EDIKQLLVAYSKEELVNLIYKTAEKGSRLISAILESADRDIAQRNIFVRGFGWDTTQENL 424
Query: 81 CAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAPSKLIDGRLAACNLAC 140
AF+ +GEIEE +V+ DK TG+ +GYGF+ +K + + AL+ P K + R+ CNLA
Sbjct: 425 KTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKRMYNRIVVCNLAS 484
Query: 141 E 141
E
Sbjct: 485 E 485
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 68/127 (53%), Gaps = 9/127 (7%)
Query: 147 SSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTT 206
S+ D++QR +++ + T E L + F +GEIEE SV DKDT +G+GFV +KT
Sbjct: 400 SADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTR 459
Query: 207 EAAKKAIDDPEKTLGGRTIIVKFAGAHKGKTGQPPF---PAGVPMAAL-----PMTPGYV 258
+ A++A+ PEK + R ++ A GK G+ P + + + + PG +
Sbjct: 460 KGAREALKRPEKRMYNRIVVCNLASEKPGKAGKEQDMAEPVNIDLTKMANQSEAVLPG-I 518
Query: 259 QSGKPHI 265
+ G+ H+
Sbjct: 519 ELGRGHV 525
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 101 bits (251), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 96/170 (56%), Gaps = 4/170 (2%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLFV LA++ +S+ L F++ G +E VIY++ T +SRG+GF+T +++ + A+
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 125 PSKL-IDGRLAACNLACEGLSGPSSALDVSQ--RKLYIGSLSPEVTSEVLLSFFGRHGEI 181
++ ++GRL N A S P A V + ++Y+G+L +V + L F HG++
Sbjct: 211 FNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKV 270
Query: 182 EEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPE-KTLGGRTIIVKFA 230
E V YD++T SRGFGFVT + +AI + + L GR I V A
Sbjct: 271 VEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
+++V L W+ + L F EHG++ E V+YD+ TG+SRG+GF+T +++ A+ A
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 125 -PSKLIDGRLAACNLACE 141
+ ++GR N+A E
Sbjct: 305 LDGQNLEGRAIRVNVAEE 322
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 111/244 (45%), Gaps = 39/244 (15%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYK--NMESTQAAL 122
KLF+ G++W TS + L F GE+ E ++ D+ATG++RG+GF+ + N+ L
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 123 RAPSKLIDGRLAAC---------------NLACEGLSGPSSALDVSQRKLYIGSLSPEVT 167
+ +IDG++ N + +G GPS++ +K+++G L+ VT
Sbjct: 67 K---HIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNS-----KKIFVGGLASSVT 118
Query: 168 SEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIV 227
+F + G I + V YD T RGFGF++Y + EA K + L G+ + V
Sbjct: 119 EAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEV 178
Query: 228 KFAGAHKGKTGQPPFPAGVPMAALPMTPGYVQSGKPHISSAPSVGYTYPQPVAPYPLASY 287
K A P + + + G ISS + Y Q +P P++ Y
Sbjct: 179 KLA-----------VPKDMALNTMRNQMNVNSFGTSRISSLLN---EYTQGFSPSPISGY 224
Query: 288 PIPP 291
+ P
Sbjct: 225 GVKP 228
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR 123
+K+FV GLA + + F + G I + V+YD T + RG+GFI+Y + E+ L+
Sbjct: 106 KKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQ 165
Query: 124 APSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVL 171
++G++ LA AL+ + ++ + S S +L
Sbjct: 166 KTFHELNGKMVEVKLAVP----KDMALNTMRNQMNVNSFGTSRISSLL 209
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 111/244 (45%), Gaps = 39/244 (15%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYK--NMESTQAAL 122
KLF+ G++W TS + L F GE+ E ++ D+ATG++RG+GF+ + N+ L
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 123 RAPSKLIDGRLAAC---------------NLACEGLSGPSSALDVSQRKLYIGSLSPEVT 167
+ +IDG++ N + +G GPS++ +K+++G L+ VT
Sbjct: 67 K---HIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNS-----KKIFVGGLASSVT 118
Query: 168 SEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIV 227
+F + G I + V YD T RGFGF++Y + EA K + L G+ + V
Sbjct: 119 EAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEV 178
Query: 228 KFAGAHKGKTGQPPFPAGVPMAALPMTPGYVQSGKPHISSAPSVGYTYPQPVAPYPLASY 287
K A P + + + G ISS + Y Q +P P++ Y
Sbjct: 179 KLA-----------VPKDMALNTMRNQMNVNSFGTSRISSLLN---EYTQGFSPSPISGY 224
Query: 288 PIPP 291
+ P
Sbjct: 225 GVKP 228
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR 123
+K+FV GLA + + F + G I + V+YD T + RG+GFI+Y + E+ L+
Sbjct: 106 KKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQ 165
Query: 124 APSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVL 171
++G++ LA AL+ + ++ + S S +L
Sbjct: 166 KTFHELNGKMVEVKLAVP----KDMALNTMRNQMNVNSFGTSRISSLL 209
>AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9392397-9393545 REVERSE LENGTH=382
Length = 382
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 72/116 (62%)
Query: 21 EDLRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETL 80
ED++ L+E +K +L++L+ K + + + A D R +FVRGL W+T+ E L
Sbjct: 120 EDIKNLLESYSKEELINLIYKTAEKGSKLISAVFESADRDSSQRNIFVRGLGWDTTHENL 179
Query: 81 CAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAPSKLIDGRLAAC 136
AAF+ +GEI E +V+ DK TG+++G+GF+ +K + +AAL+ P K + R +C
Sbjct: 180 KAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTVSC 235
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 50/79 (63%)
Query: 147 SSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTT 206
S+ D SQR +++ L + T E L + F +GEI E SV DKDT ++GFGFV +KT
Sbjct: 155 SADRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTR 214
Query: 207 EAAKKAIDDPEKTLGGRTI 225
+ A+ A+ +PEK + RT+
Sbjct: 215 KGARAALKNPEKRMYNRTV 233
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 57/84 (67%)
Query: 59 ADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMEST 118
D K+FV GLAW T SETL F+++GEI E VI DK TG+S+GYGF+T+++ E+
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAA 78
Query: 119 QAALRAPSKLIDGRLAACNLACEG 142
+ A P+ +IDGR A CNLA G
Sbjct: 79 RRACADPTPIIDGRRANCNLASLG 102
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 7/118 (5%)
Query: 151 DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAK 210
D + K+++G L+ E SE L F ++GEI E V DK+T S+G+GFVT++ EAA+
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAAR 79
Query: 211 KAIDDPEKTLGGRTIIVKFAGAHKGKTGQPPFPAGVPMAALPMTPGYVQSGKPHISSA 268
+A DP + GR A + + PP +P A +P PG ++ P+I +
Sbjct: 80 RACADPTPIIDGRRANCNLASLGRPR---PP----LPYAVIPNMPGRLRPASPYIGNV 130
>AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 58/88 (65%)
Query: 59 ADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMEST 118
D K+FV GLAW T SETL F ++G+I E VI DK TG+S+GYGF+T+++ E+
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 78
Query: 119 QAALRAPSKLIDGRLAACNLACEGLSGP 146
+ A P+ +IDGR A CNLA G S P
Sbjct: 79 RRACVDPTPIIDGRRANCNLASLGRSRP 106
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 7/120 (5%)
Query: 151 DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAK 210
D + K+++G L+ E SE L F ++G+I E V DK+T S+G+GFVT++ EAA+
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 79
Query: 211 KAIDDPEKTLGGRTIIVKFAGAHKGKTGQPPFPAGVPMAALPMTPGYVQSGKPHISSAPS 270
+A DP + GR A + + PP + A +P PG V+ P++ S S
Sbjct: 80 RACVDPTPIIDGRRANCNLASLGRSR---PP----MQYAVIPHAPGRVRPPSPYVGSVQS 132
>AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 58/88 (65%)
Query: 59 ADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMEST 118
D K+FV GLAW T SETL F ++G+I E VI DK TG+S+GYGF+T+++ E+
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 78
Query: 119 QAALRAPSKLIDGRLAACNLACEGLSGP 146
+ A P+ +IDGR A CNLA G S P
Sbjct: 79 RRACVDPTPIIDGRRANCNLASLGRSRP 106
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 7/120 (5%)
Query: 151 DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAK 210
D + K+++G L+ E SE L F ++G+I E V DK+T S+G+GFVT++ EAA+
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 79
Query: 211 KAIDDPEKTLGGRTIIVKFAGAHKGKTGQPPFPAGVPMAALPMTPGYVQSGKPHISSAPS 270
+A DP + GR A + + PP + A +P PG V+ P++ S S
Sbjct: 80 RACVDPTPIIDGRRANCNLASLGRSR---PP----MQYAVIPHAPGRVRPPSPYVGSVQS 132
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 94/192 (48%), Gaps = 23/192 (11%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLFV L +N S L F+ G +E VIYDK TG+SRG+GF+T ++ +AA +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 125 PSKL-IDGRLAACNLA------CEGLS-GP--------------SSALDVSQRKLYIGSL 162
+ +DGR N +G S GP + S ++Y+G+L
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 163 SPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPE-KTLG 221
S V L S F G++ E V YD+D+ S+GFGFVTY +++ + AI + L
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLD 271
Query: 222 GRTIIVKFAGAH 233
GR I V A A
Sbjct: 272 GRQIRVSEAEAR 283
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 87/167 (52%), Gaps = 1/167 (0%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLFV G++W T++ET F + GE+ + ++ D+ TG RG+GF+T+ + + L
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 125 PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEG 184
+ D ++ G RK+++G L P + + L ++F +G+I E
Sbjct: 127 DHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEH 186
Query: 185 SVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPE-KTLGGRTIIVKFA 230
+ YD T SRGFGFVT++T ++ + D + LG + + +K A
Sbjct: 187 QIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRA 233
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 59/90 (65%)
Query: 59 ADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMEST 118
D H K+FV GLAW T ++ + F + GEI E +I DKATGKS+GYGF+T+++ +S
Sbjct: 12 GDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSA 71
Query: 119 QAALRAPSKLIDGRLAACNLACEGLSGPSS 148
A+ P+ +IDGR A CN+A G PS+
Sbjct: 72 TRAVADPNPVIDGRKANCNIASFGRPRPST 101
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 151 DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAK 210
D + K+++G L+ E ++ + +F + GEI E + DK T S+G+GFVT++ +++A
Sbjct: 13 DTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSAT 72
Query: 211 KAIDDPEKTLGGRTIIVKFA 230
+A+ DP + GR A
Sbjct: 73 RAVADPNPVIDGRKANCNIA 92
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 109/261 (41%), Gaps = 51/261 (19%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYK--NMESTQAAL 122
KLF+ G++W TS + L F GE+ E ++ D+ATG++RG+GF+ + N+ L
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 123 RAPSKLIDGRLAACNLACEGLSGPSSALDVSQ---------------------------- 154
+ +IDG++ ++ L + +S+
Sbjct: 67 K---HIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQGSPG 123
Query: 155 ----RKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAK 210
+K+++G L+ VT +F + G I + V YD T RGFGF++Y + EA
Sbjct: 124 PSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVD 183
Query: 211 KAIDDPEKTLGGRTIIVKFAGAHKGKTGQPPFPAGVPMAALPMTPGYVQSGKPHISSAPS 270
K + L G+ + VK A P + + + G ISS +
Sbjct: 184 KVLQKTFHELNGKMVEVKLA-----------VPKDMALNTMRNQMNVNSFGTSRISSLLN 232
Query: 271 VGYTYPQPVAPYPLASYPIPP 291
Y Q +P P++ Y + P
Sbjct: 233 ---EYTQGFSPSPISGYGVKP 250
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR 123
+K+FV GLA + + F + G I + V+YD T + RG+GFI+Y + E+ L+
Sbjct: 128 KKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQ 187
Query: 124 APSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVL 171
++G++ LA AL+ + ++ + S S +L
Sbjct: 188 KTFHELNGKMVEVKLAVP----KDMALNTMRNQMNVNSFGTSRISSLL 231
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 15/180 (8%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLF+ G++W+T E L F +G++ E ++ D+ATG++RG+GFI + + ++ +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-M 65
Query: 125 PSKLIDGRLAACNLACE--------------GLSGPSSALDVSQRKLYIGSLSPEVTSEV 170
+IDGR A L P +K+++G L +T E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 171 LLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVKFA 230
++F + G I + V YD +T RGFGF+T+ + +A + + L G+ + VK A
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 15/180 (8%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLF+ G++W+T E L F +G++ E ++ D+ATG++RG+GFI + + ++ +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-M 65
Query: 125 PSKLIDGRLAACNLACE--------------GLSGPSSALDVSQRKLYIGSLSPEVTSEV 170
+IDGR A L P +K+++G L +T E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 171 LLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVKFA 230
++F + G I + V YD +T RGFGF+T+ + +A + + L G+ + VK A
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 15/180 (8%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLF+ G++W+T E L F +G++ E ++ D+ATG++RG+GFI + + ++ +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-M 65
Query: 125 PSKLIDGRLAACNLACE--------------GLSGPSSALDVSQRKLYIGSLSPEVTSEV 170
+IDGR A L P +K+++G L +T E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 171 LLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVKFA 230
++F + G I + V YD +T RGFGF+T+ + +A + + L G+ + VK A
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 15/180 (8%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLF+ G++W+T E L F +G++ E ++ D+ATG++RG+GFI + + ++ +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-M 65
Query: 125 PSKLIDGRLAACNLACE--------------GLSGPSSALDVSQRKLYIGSLSPEVTSEV 170
+IDGR A L P +K+++G L +T E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 171 LLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVKFA 230
++F + G I + V YD +T RGFGF+T+ + +A + + L G+ + VK A
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 81/149 (54%), Gaps = 1/149 (0%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
K+F+ GL +T++ F ++GEI + ++ D+ TG+ RG+GFIT+ + +
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 125 PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEG 184
+ +I+G+ +G + + D+ +K+++G + VT + L FF ++G + E
Sbjct: 80 -THVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEH 138
Query: 185 SVAYDKDTNVSRGFGFVTYKTTEAAKKAI 213
V D +TN SRGFGFV + + E + +
Sbjct: 139 QVIRDHETNRSRGFGFVIFDSEEVVDELL 167
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
K++IG L + T+ V FG++GEI + + D+ T RGFGF+T+ K I+D
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 216 PEKTLGGRTIIVK 228
+ G+ + +K
Sbjct: 80 TH-VINGKQVEIK 91
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 15/185 (8%)
Query: 60 DPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQ 119
D KLFV G++W T + L F +GE+ + V+ DK TG+ RG+GF+ + +
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLD 61
Query: 120 AALRAPSKLIDGRLAACNLAC----EGLSGPSSALDVSQ----------RKLYIGSLSPE 165
L+ ID R A + +SG + L+ S+ +K+++G L P
Sbjct: 62 RVLQEKHS-IDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPT 120
Query: 166 VTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTI 225
+T E +F +G + + ++ YD+ TN RGFGFV++ + +A + L G+ +
Sbjct: 121 LTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQV 180
Query: 226 IVKFA 230
VK A
Sbjct: 181 EVKRA 185
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 13/178 (7%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLF+ G++W+T+ E L F GE+ E ++ D+ TG++RG+GF+ + + + +
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 125 PSKLIDGRLAACNLAC----EGLSGPSSALDVS--------QRKLYIGSLSPEVTSEVLL 172
IDGRL A + + S++ + RK+++G L VT
Sbjct: 67 KHN-IDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFK 125
Query: 173 SFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVKFA 230
++F + G + V YD +T RGFGF+TY + EA +K + L G+ + VK A
Sbjct: 126 TYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 13/178 (7%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLF+ G++W+T+ E L F GE+ E ++ D+ TG++RG+GF+ + + + +
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 125 PSKLIDGRLAACNLAC----EGLSGPSSALDVS--------QRKLYIGSLSPEVTSEVLL 172
IDGRL A + + S++ + RK+++G L VT
Sbjct: 67 KHN-IDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFK 125
Query: 173 SFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVKFA 230
++F + G + V YD +T RGFGF+TY + EA +K + L G+ + VK A
Sbjct: 126 TYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183
>AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107659 FORWARD LENGTH=249
Length = 249
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 58/88 (65%)
Query: 56 IASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNM 115
I D + K+FV GLAW T ET+ F++ GEI E VI DKA+G+S+GYGF+T++
Sbjct: 5 IGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREA 64
Query: 116 ESTQAALRAPSKLIDGRLAACNLACEGL 143
E+ ++A + +IDGR A CNLA GL
Sbjct: 65 EAARSACVDATPVIDGRRANCNLASLGL 92
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 151 DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAK 210
D + K+++G L+ E E + F + GEI E V DK + S+G+GFVT++ EAA+
Sbjct: 9 DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
Query: 211 KAIDDPEKTLGGRTIIVKFA 230
A D + GR A
Sbjct: 69 SACVDATPVIDGRRANCNLA 88
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 54/82 (65%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
K+FV GLAW T +T+ F++ GEI E VI DK TG+S+GYGF+T+K E+ A +
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 125 PSKLIDGRLAACNLACEGLSGP 146
+ +IDGR A CNLAC G P
Sbjct: 83 MNPVIDGRRANCNLACLGAQKP 104
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 145 GPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYK 204
G ++ D K+++G L+ E + + +F + GEI E V DK+T S+G+GFVT+K
Sbjct: 12 GNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFK 71
Query: 205 TTEAAKKAIDDPEKTLGGRTIIVKFA--GAHK 234
EAA +A + + GR A GA K
Sbjct: 72 EAEAAMRACQNMNPVIDGRRANCNLACLGAQK 103
>AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107618 FORWARD LENGTH=242
Length = 242
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 58/88 (65%)
Query: 56 IASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNM 115
I D + K+FV GLAW T ET+ F++ GEI E VI DKA+G+S+GYGF+T++
Sbjct: 5 IGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREA 64
Query: 116 ESTQAALRAPSKLIDGRLAACNLACEGL 143
E+ ++A + +IDGR A CNLA GL
Sbjct: 65 EAARSACVDATPVIDGRRANCNLASLGL 92
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 151 DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAK 210
D + K+++G L+ E E + F + GEI E V DK + S+G+GFVT++ EAA+
Sbjct: 9 DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
Query: 211 KAIDDPEKTLGGRTIIVKFA 230
A D + GR A
Sbjct: 69 SACVDATPVIDGRRANCNLA 88
>AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107949 FORWARD LENGTH=347
Length = 347
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 58/88 (65%)
Query: 56 IASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNM 115
I D + K+FV GLAW T ET+ F++ GEI E VI DKA+G+S+GYGF+T++
Sbjct: 5 IGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREA 64
Query: 116 ESTQAALRAPSKLIDGRLAACNLACEGL 143
E+ ++A + +IDGR A CNLA GL
Sbjct: 65 EAARSACVDATPVIDGRRANCNLASLGL 92
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 151 DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAK 210
D + K+++G L+ E E + F + GEI E V DK + S+G+GFVT++ EAA+
Sbjct: 9 DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
Query: 211 KAIDDPEKTLGGR 223
A D + GR
Sbjct: 69 SACVDATPVIDGR 81
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 81/149 (54%), Gaps = 1/149 (0%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
K+F+ GL +T++ F ++GEI + ++ D+ TG+ RG+GFIT+ + +
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE- 78
Query: 125 PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEG 184
+ +I+G+ +G + + D+ +K+++G + VT + L FF ++G + E
Sbjct: 79 DTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEH 138
Query: 185 SVAYDKDTNVSRGFGFVTYKTTEAAKKAI 213
V D +TN SRGFGFV + + E + +
Sbjct: 139 QVIRDHETNRSRGFGFVIFDSEEVVDELL 167
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
K++IG L + T+ V FG++GEI + + D+ T RGFGF+T+ K I+D
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 216 PEKTLGGRTIIVKF-----AGAHKGKT--GQPPFPAGVP 247
+ G+ + +K AG ++ K + F G+P
Sbjct: 80 TH-VINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIP 117
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 87/174 (50%), Gaps = 4/174 (2%)
Query: 61 PVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQA 120
P KLFV L ++ S+ L F++ G +E VIY++ T +SRG+GF+T +E +
Sbjct: 110 PEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEK 169
Query: 121 ALRAPSKL-IDGRLAACNLACEGLSGPSSALDV--SQRKLYIGSLSPEVTSEVLLSFFGR 177
A+ + ++GR N A S P V + ++Y+G+L +V S L F
Sbjct: 170 AVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSE 229
Query: 178 HGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPE-KTLGGRTIIVKFA 230
HG++ + V D++T SRGFGFV AI + + L GR I V A
Sbjct: 230 HGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 76/143 (53%), Gaps = 3/143 (2%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
K+FV GLA T+S F ++GEI + ++ D+ TG+ RG+GF+TY + ++
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ- 101
Query: 125 PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEG 184
+ +I G+ G S+ D +K+++G + V + FF + GE++E
Sbjct: 102 DNHIIIGKQVEIKRTIP--RGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEH 159
Query: 185 SVAYDKDTNVSRGFGFVTYKTTE 207
+ D T SRGFGFVTY++ +
Sbjct: 160 QIMRDHSTGRSRGFGFVTYESED 182
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
K+++G L+ E TS L FG++GEI + + D+ T RGFGFVTY + K I D
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD 102
Query: 216 PEKTLGGRTII 226
+G + I
Sbjct: 103 NHIIIGKQVEI 113
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 16/131 (12%)
Query: 4 LKKRKLEEATNGGFTSVEDLRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIK------SIA 57
+K RK + GF + D ++ + + ++ +G Q EIK S++
Sbjct: 74 MKDRKTGQPRGFGFVTYADSSVVDKVIQDNHII-----IGKQV-----EIKRTIPRGSMS 123
Query: 58 SADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMES 117
S D +K+FV G+ + + F + GE++E ++ D +TG+SRG+GF+TY++ +
Sbjct: 124 SNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDM 183
Query: 118 TQAALRAPSKL 128
L +++
Sbjct: 184 VDHLLAKGNRI 194
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 54/81 (66%)
Query: 60 DPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQ 119
D + K+FV GLAW T ++ + F++ GEI E +I DK TGKS+GYGF+T++ +S
Sbjct: 13 DTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSAT 72
Query: 120 AALRAPSKLIDGRLAACNLAC 140
A+ P+ +IDGR A CN+A
Sbjct: 73 RAVADPNPVIDGRKANCNIAS 93
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%)
Query: 151 DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAK 210
D + K+++G L+ E ++ + +F + GEI E + DK+T S+G+GFVT++ +++A
Sbjct: 13 DTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSAT 72
Query: 211 KAIDDPEKTLGGRTIIVKFA 230
+A+ DP + GR A
Sbjct: 73 RAVADPNPVIDGRKANCNIA 92
>AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=245
Length = 245
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 68/117 (58%), Gaps = 7/117 (5%)
Query: 60 DPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQ 119
D K+FV GLAW T +L F++ G+I E VI DK++G+S+GYGF+T+ + E+ Q
Sbjct: 3 DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
Query: 120 AALRAPSKLIDGRLAACNLACEGL--SGPSSALDVSQRKLYIGSLSPEVTSEVLLSF 174
A P+ +IDGR A CNLA G+ S PSS + ++G +VTS F
Sbjct: 63 KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPI-----HGHVGGRGMKVTSPFKTHF 114
>AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=244
Length = 244
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 68/117 (58%), Gaps = 7/117 (5%)
Query: 60 DPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQ 119
D K+FV GLAW T +L F++ G+I E VI DK++G+S+GYGF+T+ + E+ Q
Sbjct: 3 DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
Query: 120 AALRAPSKLIDGRLAACNLACEGL--SGPSSALDVSQRKLYIGSLSPEVTSEVLLSF 174
A P+ +IDGR A CNLA G+ S PSS + ++G +VTS F
Sbjct: 63 KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPI-----HGHVGGRGMKVTSPFKTHF 114
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 54/82 (65%)
Query: 59 ADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMEST 118
D + K+FV GLAW T ++ + F++ GEI E +I DK TGKS+GYGF+T++ +S
Sbjct: 12 GDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSA 71
Query: 119 QAALRAPSKLIDGRLAACNLAC 140
A+ P+ +IDGR A CN+A
Sbjct: 72 TRAVADPNPVIDGRKANCNIAS 93
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 47/73 (64%)
Query: 151 DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAK 210
D + K+++G L+ E ++ + +F + GEI E + DK+T S+G+GFVT++ +++A
Sbjct: 13 DTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSAT 72
Query: 211 KAIDDPEKTLGGR 223
+A+ DP + GR
Sbjct: 73 RAVADPNPVIDGR 85
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 18/183 (9%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLF+ G++W+T E L F ++G++ E ++ D+ TG++RG+GFI + + + +
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI-M 74
Query: 125 PSKLIDGRLAACNLAC--------------EGLSGPSSALD---VSQRKLYIGSLSPEVT 167
+IDGR A L PS + +K+++G L +T
Sbjct: 75 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSIT 134
Query: 168 SEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIV 227
++F + G I + V YD +T RGFGF+T+ + E+ + L G+ + V
Sbjct: 135 EAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEV 194
Query: 228 KFA 230
K A
Sbjct: 195 KRA 197
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 91/171 (53%), Gaps = 8/171 (4%)
Query: 62 VHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAA 121
+ RKL V G+ W+ S+ L + G++E+ V+ D++TG+SRG+G++T+ + E + A
Sbjct: 1 MERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA 60
Query: 122 LRAPSKLIDGRLAACNLAC--EGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHG 179
L+ + R+ +A E + P+ + ++++ + V+ S F R+G
Sbjct: 61 LKG-EHFLGNRILEVKVATPKEEMRQPAKKVT----RIFVARIPSSVSESDFRSHFERYG 115
Query: 180 EIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVKFA 230
EI + + D ++ RG GF+T+ + ++ + ++D LGG T+ V A
Sbjct: 116 EITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDTHD-LGGTTVAVDRA 165
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 91/171 (53%), Gaps = 8/171 (4%)
Query: 62 VHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAA 121
+ RKL V G+ W+ S+ L + G++E+ V+ D++TG+SRG+G++T+ + E + A
Sbjct: 1 MERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA 60
Query: 122 LRAPSKLIDGRLAACNLAC--EGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHG 179
L+ + R+ +A E + P+ + ++++ + V+ S F R+G
Sbjct: 61 LKG-EHFLGNRILEVKVATPKEEMRQPAKKVT----RIFVARIPSSVSESDFRSHFERYG 115
Query: 180 EIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVKFA 230
EI + + D ++ RG GF+T+ + ++ + ++D LGG T+ V A
Sbjct: 116 EITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDTHD-LGGTTVAVDRA 165
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 18/183 (9%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLF+ G++W+T E L F ++G++ E ++ D+ TG++RG+GFI + + + +
Sbjct: 13 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI-M 71
Query: 125 PSKLIDGRLAACNLAC--------------EGLSGPSSALD---VSQRKLYIGSLSPEVT 167
+IDGR A L PS + +K+++G L +T
Sbjct: 72 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSIT 131
Query: 168 SEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIV 227
++F + G I + V YD +T RGFGF+T+ + E+ + L G+ + V
Sbjct: 132 EAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEV 191
Query: 228 KFA 230
K A
Sbjct: 192 KRA 194
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 10/160 (6%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL- 122
R++++ + ++E L +EHG +E+ V+YDK +G+SR +GF T K++E A +
Sbjct: 76 RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVE 135
Query: 123 RAPSKLIDGRLAACNLA---------CEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLS 173
+ ++GR N+ L SA S K+Y+G+L+ VT E+L +
Sbjct: 136 KLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLEN 195
Query: 174 FFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAI 213
F G++ V+ T+ S GFGFVT+ + E + AI
Sbjct: 196 LFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAI 235
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 148 SALDVSQ---RKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYK 204
+ALD S R++YIG++ VT+E L HG +E+ V YDK + SR FGF T K
Sbjct: 66 AALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMK 125
Query: 205 TTEAAKKAIDDPE-KTLGGRTIIVK 228
+ E A ++ T+ GR I V
Sbjct: 126 SVEDANAVVEKLNGNTVEGREIKVN 150
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 10/160 (6%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL- 122
R++++ + ++E L +EHG +E+ V+YDK +G+SR +GF T K++E A +
Sbjct: 76 RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVE 135
Query: 123 RAPSKLIDGRLAACNLA---------CEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLS 173
+ ++GR N+ L SA S K+Y+G+L+ VT E+L +
Sbjct: 136 KLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLEN 195
Query: 174 FFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAI 213
F G++ V+ T+ S GFGFVT+ + E + AI
Sbjct: 196 LFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAI 235
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 148 SALDVSQ---RKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYK 204
+ALD S R++YIG++ VT+E L HG +E+ V YDK + SR FGF T K
Sbjct: 66 AALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMK 125
Query: 205 TTEAAKKAIDDPE-KTLGGRTIIVK 228
+ E A ++ T+ GR I V
Sbjct: 126 SVEDANAVVEKLNGNTVEGREIKVN 150
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 91/203 (44%), Gaps = 45/203 (22%)
Query: 57 ASADP---VHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYK 113
A DP V+ KL+ L +N S TL Q+ E V+Y++ TG+SRG+ F+T
Sbjct: 75 AVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMS 134
Query: 114 NMESTQAALRAPSKLIDGRLAACNLACEGLSGPS---SALDV----------------SQ 154
N+E CN+ + L G AL V ++
Sbjct: 135 NVED------------------CNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETE 176
Query: 155 RKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKT---TEAAKK 211
KL++G+LS VTSE L F G++ V +D DT SRG+GFV Y + E A +
Sbjct: 177 HKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALE 236
Query: 212 AIDDPEKTLGGRTIIVKFAGAHK 234
++D E L GR I V A K
Sbjct: 237 SLDGFE--LEGRAIRVNLAQGKK 257
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 20/131 (15%)
Query: 18 TSVEDLRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADP--------VHRKLFVR 69
++VED ++I+ L G++Y A ++ P KLFV
Sbjct: 134 SNVEDCNIIIDNLD-----------GTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVG 182
Query: 70 GLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAPSKL- 128
L+W +SE+L AF+E G++ V++D TG+SRGYGF+ Y + + AL +
Sbjct: 183 NLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFE 242
Query: 129 IDGRLAACNLA 139
++GR NLA
Sbjct: 243 LEGRAIRVNLA 253
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 15/180 (8%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLF+ G++W+T L F GE+ + V+ +KATG+ RG+GF+ + + L+
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ- 65
Query: 125 PSKLIDGRLAACNLACE-------GLSGP-------SSALDVSQRKLYIGSLSPEVTSEV 170
ID R A G SG S +V +K+++G L P +TS+
Sbjct: 66 DKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDE 125
Query: 171 LLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVKFA 230
++F +G + + + D+ T RGFGFV++ + ++ + L G+ + VK A
Sbjct: 126 FRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRA 185
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 84/191 (43%), Gaps = 27/191 (14%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLFV G+A TS E L F +G + E V +K TGK RG+GF+ + N ALR
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 125 PS-------------------------KLIDGRLAACNLACEGLSGPSSALDVSQRKLYI 159
+ ++ ++ N +S S+ + +K+++
Sbjct: 67 THFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMS--SNGVTSRTKKIFV 124
Query: 160 GSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKT 219
G LS T E S+F R G + V +D TN RGFGFVTY + ++ + +
Sbjct: 125 GGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHE 184
Query: 220 LGGRTIIVKFA 230
L + + VK A
Sbjct: 185 LSDKRVEVKRA 195
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 150 LDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAA 209
+D + KL++G ++ E + E L +F R+G + E VA +K T RGFGFV +
Sbjct: 1 MDYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDV 60
Query: 210 KKAIDDPEKTLG 221
KA+ D LG
Sbjct: 61 VKALRDTHFILG 72
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR 123
+K+FV GL+ NT+ E + F+ G + V++D T + RG+GF+TY + +S + ++
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQ 179
Query: 124 AP-SKLIDGRL 133
+ +L D R+
Sbjct: 180 SNFHELSDKRV 190
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 103/225 (45%), Gaps = 19/225 (8%)
Query: 66 LFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAP 125
++V GL S E L F + G + V D+ T + YGFI Y++ E A++
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 126 SKL-IDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEG 184
+ + + G+ N A + +LDV L+IG+L P+V ++L F G I
Sbjct: 87 NMIKLHGKPIRVNKASQD----KKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIASN 141
Query: 185 -SVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPE-KTLGGRTIIVKFAGAHKGKTGQPPF 242
+ D DT SRGFGF++Y + EA+ AI+ + L R I V +A K +
Sbjct: 142 PKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKGERHGT 201
Query: 243 PAGVPMAALPMTPGYVQSGKPHI-------SSAPSVGYTYPQPVA 280
PA +AA T Q +PH SSAP V P+P A
Sbjct: 202 PAERLLAATNPT---AQKSRPHTLFAMGPPSSAPQVN-GLPRPFA 242
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 13/190 (6%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
+L+V L + +S L F E G + + ++YDK T +SRG+GF+T ++E + A++
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 125 -PSKLIDGRLAACNLACEGLSGPSSALDVSQR-----------KLYIGSLSPEVTSEVLL 172
S I GR N G + + R K+Y G+L +TS+ L
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 236
Query: 173 SFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKT-LGGRTIIVKFAG 231
FG + V Y+++T SRGFGF+++++ E + A+ + GR + + A
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLAS 296
Query: 232 AHKGKTGQPP 241
+ T PP
Sbjct: 297 EREKPTVSPP 306
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 5/179 (2%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLFV + + E + F++HG + E A+I DK TG+ +G F+ Y + A+RA
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 125 PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEG 184
I + G + + KL++GSL+ + T + + F + G +E+
Sbjct: 181 LHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDV 240
Query: 185 SVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRT----IIVKFAGAHKGKTGQ 239
+ D + SRG GFV Y + E A AID T R +IV+FA + K G+
Sbjct: 241 YLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGE 298
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 5/179 (2%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLFV + + E + F++HG + E A+I DK TG+ +G F+ Y + A+RA
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 125 PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEG 184
I + G + + KL++GSL+ + T + + F + G +E+
Sbjct: 181 LHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDV 240
Query: 185 SVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRT----IIVKFAGAHKGKTGQ 239
+ D + SRG GFV Y + E A AID T R +IV+FA + K G+
Sbjct: 241 YLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGE 298
>AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:20273863-20275827 REVERSE LENGTH=261
Length = 261
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 51/78 (65%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
K+FV GLAW+T E + F ++G+I E +I DK T +S+GYGF+T+K+ ++ A
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 125 PSKLIDGRLAACNLACEG 142
+ +I+GR A CNLA G
Sbjct: 78 STPIINGRRANCNLASLG 95
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 151 DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAK 210
D K+++G L+ + E + F ++G+I E + DK T S+G+GFVT+K +AA
Sbjct: 13 DTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAAT 72
Query: 211 KAIDDPEKTLGGR 223
+A +D + GR
Sbjct: 73 RACEDSTPIINGR 85
>AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3640349-3640876 REVERSE LENGTH=175
Length = 175
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 53/82 (64%)
Query: 58 SADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMES 117
+ D + K++V GL W T +E L + F++ G+I ++ D+ TG+S GYGF+T+++ ES
Sbjct: 46 NVDTRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAES 105
Query: 118 TQAALRAPSKLIDGRLAACNLA 139
A + P +IDGR A CNLA
Sbjct: 106 ATRACQNPKPVIDGREAKCNLA 127
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 147 SSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTT 206
+ +D K+Y+G L E +E L S+F + G+I ++ D++T S G+GFVT++
Sbjct: 44 NENVDTRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDA 103
Query: 207 EAAKKAIDDPEKTLGGR 223
E+A +A +P+ + GR
Sbjct: 104 ESATRACQNPKPVIDGR 120
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 5/179 (2%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLFV + + E + F++HG + E A+I DK TG+ +G F+ Y + A+RA
Sbjct: 46 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 105
Query: 125 PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEG 184
I + G + + KL++GSL+ + T + + F + G +E+
Sbjct: 106 LHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDV 165
Query: 185 SVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRT----IIVKFAGAHKGKTGQ 239
+ D + SRG GFV Y + E A AID T R +IV+FA + K G+
Sbjct: 166 YLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGE 223
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 82/183 (44%), Gaps = 38/183 (20%)
Query: 63 HRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL 122
H +FV L+ + L +F + V++D+ TG+SRG+GF++++N + Q A+
Sbjct: 147 HFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI 206
Query: 123 RAPS-KLIDGRLAACNLACEGL--------SGPSSALDVSQ------RKL---------- 157
+ K + R CN A +G S S ++++ R+L
Sbjct: 207 NEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNP 266
Query: 158 -----YIGSLSPEVTSEVLLSFFGRHGE--IEEGSVAYDKDTNVSRGFGFVTYKTTEAAK 210
Y+G+LSPEVT L F G IEE V DK GFGFV Y T + A
Sbjct: 267 QFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDK------GFGFVRYNTHDEAA 320
Query: 211 KAI 213
AI
Sbjct: 321 LAI 323
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 84 FQEHGEIEEGAVIY-DKATGKSRGYGFITYKNME-STQAALRAPSKLIDGRLAACNLA-C 140
F G IE +I DK++ YGF+ Y + ++ A + + I G+ N A
Sbjct: 83 FASTGPIESCKLIRKDKSS-----YGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYA 137
Query: 141 EGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGF 200
G +S S +++G LSPEVT L F + V +D+ T SRGFGF
Sbjct: 138 TGQREDTS----SHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGF 193
Query: 201 VTYKTTEAAKKAIDDPE-KTLGGRTIIVKFA 230
V+++ + A+ AI++ K + R I +A
Sbjct: 194 VSFRNQQDAQTAINEMNGKWVSSRQIRCNWA 224
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 78/183 (42%), Gaps = 38/183 (20%)
Query: 63 HRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL 122
H +FV L+ + TL +F + V++D+ TG+SRG+GF++++N + Q A+
Sbjct: 143 HFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI 202
Query: 123 RAPS-KLIDGRLAACNLACEGLSGPSSALDVSQRK------------------------- 156
+ K + R CN A +G + L +
Sbjct: 203 NEMNGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENNS 262
Query: 157 ----LYIGSLSPEVTSEVLLSFFGRHGE--IEEGSVAYDKDTNVSRGFGFVTYKTTEAAK 210
+Y+G+L+PEVT L +F G IEE V DK GFGFV Y T A
Sbjct: 263 QFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDK------GFGFVRYNTHPEAA 316
Query: 211 KAI 213
AI
Sbjct: 317 LAI 319
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 15/207 (7%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIY-DKATGKSRGYGFITYKNMESTQ-AA 121
R ++V + + L F G +E +I DK++ YGF+ Y + S A
Sbjct: 59 RSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS-----YGFVHYFDRRSAALAI 113
Query: 122 LRAPSKLIDGRLAACNLA-CEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGE 180
L + + G+ N A G +S S +++G LSPEVT L F
Sbjct: 114 LSLNGRHLFGQPIKVNWAYATGQREDTS----SHFNIFVGDLSPEVTDATLYQSFSVFSS 169
Query: 181 IEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPE-KTLGGRTIIVKFAGAHKGKTGQ 239
+ V +D+ T SRGFGFV+++ + A+ AI++ K L R I +A KG T
Sbjct: 170 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWAT--KGATSG 227
Query: 240 PPFPAGVPMAALPMTPGYVQSGKPHIS 266
+ + + +T G + GK ++
Sbjct: 228 DDKLSSDGKSVVELTTGSSEDGKETLN 254
>AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21798382-21799109 FORWARD LENGTH=169
Length = 169
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 48/83 (57%)
Query: 60 DPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQ 119
D K++V GL W T E L F+ GEI V+ D+ T +S+GYGF+T+K+ ES
Sbjct: 9 DTTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESAT 68
Query: 120 AALRAPSKLIDGRLAACNLACEG 142
A + P+ I+GR+ C LA G
Sbjct: 69 RACKDPNPTIEGRITNCKLAFVG 91
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%)
Query: 143 LSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVT 202
+S D + K+Y+G L E L++FF R GEI +V D++T+ S+G+GFVT
Sbjct: 1 MSHHHQNFDTTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVT 60
Query: 203 YKTTEAAKKAIDDPEKTLGGRTIIVKFA 230
+K E+A +A DP T+ GR K A
Sbjct: 61 FKDAESATRACKDPNPTIEGRITNCKLA 88
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR- 123
KLFV GL+W T +L AF GE+ E VI D+ TG+SRG+GF+++ +S A++
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 124 APSKLIDGRLAACNLACEGLSGPSSAL 150
K ++GR NLA E S P S+
Sbjct: 96 MDGKELNGRQIRVNLATERSSAPRSSF 122
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
KL++G LS L F GE+ E +V D++T SRGFGFV++ ++A AI +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 216 PE-KTLGGRTIIVKFA 230
+ K L GR I V A
Sbjct: 96 MDGKELNGRQIRVNLA 111
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR- 123
KLFV GL+W T +L AF GE+ E VI D+ TG+SRG+GF+++ +S A++
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 124 APSKLIDGRLAACNLACEGLSGPSSAL 150
K ++GR NLA E S P S+
Sbjct: 96 MDGKELNGRQIRVNLATERSSAPRSSF 122
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
KL++G LS L F GE+ E +V D++T SRGFGFV++ ++A AI +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 216 PE-KTLGGRTIIVKFA 230
+ K L GR I V A
Sbjct: 96 MDGKELNGRQIRVNLA 111
>AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2199653-2201150 REVERSE LENGTH=317
Length = 317
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
K+FV L W T+++ L F++ G++ + V+ + G+S+GYGFIT+++ ST AL+
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72
Query: 125 PSKLIDGRLAACNLACEG 142
+IDGR CNLA G
Sbjct: 73 SKPIIDGRTTNCNLASAG 90
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 105/271 (38%), Gaps = 54/271 (19%)
Query: 10 EEATNGGFTSVEDLR---LLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKL 66
+E ++ GF D R L I L L K+ Y S E S H +
Sbjct: 88 KEKSSYGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWAYASGQREDTS------SHFNI 141
Query: 67 FVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL-RAP 125
FV L+ + L F + + V++D+ TG+SRG+GF++++N + Q A+
Sbjct: 142 FVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEIT 201
Query: 126 SKLIDGRLAACNLACEG--------------------------LSGPSSALDVSQRKLYI 159
K + R CN A +G +G + + +Y+
Sbjct: 202 GKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGDGKDTTNGEAPENNAQYTTVYV 261
Query: 160 GSLSPEVTSEVLLSFFGRHGE--IEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID--D 215
G+L+PEV+ L F G IEE V DK GFGFV Y T A AI +
Sbjct: 262 GNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDK------GFGFVRYSTHVEAALAIQMGN 315
Query: 216 PEKTLGGRTIIVKFAGAHKGKTGQPPFPAGV 246
L GR + K G P PAG
Sbjct: 316 THSYLSGRQM--------KCSWGSKPTPAGT 338
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQ-AAL 122
R ++V + + L F G +E +I + + YGF+ Y + S A L
Sbjct: 54 RSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAIL 109
Query: 123 RAPSKLIDGRLAACNLA-CEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEI 181
+ + G+ N A G +S S +++G LSPEVT +L + F +
Sbjct: 110 SLNGRHLFGQPIKVNWAYASGQREDTS----SHFNIFVGDLSPEVTDAMLFTCFSVYPTC 165
Query: 182 EEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD-PEKTLGGRTIIVKFA--GAHKGKTG 238
+ V +D+ T SRGFGFV+++ + A+ AID+ K LG R I +A GA G+
Sbjct: 166 SDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGEDK 225
Query: 239 Q 239
Q
Sbjct: 226 Q 226
>AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21806622-21807012 FORWARD LENGTH=100
Length = 100
Score = 68.9 bits (167), Expect = 4e-12, Method: Composition-based stats.
Identities = 33/78 (42%), Positives = 47/78 (60%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
K++V GL W T +E L + F+ GEI V+ D AT +S+G+GF+T++ +ES A
Sbjct: 10 KIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACEN 69
Query: 125 PSKLIDGRLAACNLACEG 142
P+ IDGR C LA G
Sbjct: 70 PNHTIDGRTVNCKLAYLG 87
Score = 63.2 bits (152), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 154 QRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAI 213
+ K+Y+ L +E L+S+F R GEI V D T S+GFGFVT++ E+A +A
Sbjct: 8 ETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRAC 67
Query: 214 DDPEKTLGGRTIIVKFA 230
++P T+ GRT+ K A
Sbjct: 68 ENPNHTIDGRTVNCKLA 84
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 105/274 (38%), Gaps = 57/274 (20%)
Query: 10 EEATNGGFTSVEDLR---LLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKL 66
+E ++ GF D R L I L L K+ Y S E S H +
Sbjct: 88 KEKSSYGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWAYASGQREDTS------SHFNI 141
Query: 67 FVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL-RAP 125
FV L+ + L F + + V++D+ TG+SRG+GF++++N + Q A+
Sbjct: 142 FVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEIT 201
Query: 126 SKLIDGRLAACNLACEG-----------------------------LSGPSSALDVSQRK 156
K + R CN A +G +G + +
Sbjct: 202 GKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQYTT 261
Query: 157 LYIGSLSPEVTSEVLLSFFGRHGE--IEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID 214
+Y+G+L+PEV+ L F G IEE V DK GFGFV Y T A AI
Sbjct: 262 VYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDK------GFGFVRYSTHVEAALAIQ 315
Query: 215 --DPEKTLGGRTIIVKFAGAHKGKTGQPPFPAGV 246
+ L GR + K G P PAG
Sbjct: 316 MGNTHSYLSGRQM--------KCSWGSKPTPAGT 341
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 13/202 (6%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQ-AAL 122
R ++V + + L F G +E +I + + YGF+ Y + S A L
Sbjct: 54 RSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAIL 109
Query: 123 RAPSKLIDGRLAACNLA-CEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEI 181
+ + G+ N A G +S S +++G LSPEVT +L + F +
Sbjct: 110 SLNGRHLFGQPIKVNWAYASGQREDTS----SHFNIFVGDLSPEVTDAMLFTCFSVYPTC 165
Query: 182 EEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD-PEKTLGGRTIIVKFAGAHKGKTGQP 240
+ V +D+ T SRGFGFV+++ + A+ AID+ K LG R I +A KG T
Sbjct: 166 SDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWAT--KGATSGE 223
Query: 241 PFPAGVPMAALPMTPGYVQSGK 262
+ + + +T G + GK
Sbjct: 224 DKQSSDSKSVVELTSGVSEDGK 245
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 10/167 (5%)
Query: 56 IASADPVHR-----KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFI 110
+++ DP R +F++ L + ++ L F G I V D G+S+GYGF+
Sbjct: 133 LSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFV 191
Query: 111 TYKNMESTQAALRAPSKLI--DGRLAACNLACEGLSGPSSALDV-SQRKLYIGSLSPEVT 167
++ E+ QAA+ + ++ D ++ + S + V S +Y+ +L E+T
Sbjct: 192 QFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEIT 251
Query: 168 SEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID 214
+ L FG++G+I V D+ N SR FGFV + + EAA A++
Sbjct: 252 DDELKKTFGKYGDISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVE 297
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 15/186 (8%)
Query: 51 EEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFI 110
+ +S + A P ++V+ L + + L F ++G+I V+ D+ +G SR +GF+
Sbjct: 226 DRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFV 284
Query: 111 TYKNMESTQAALR-------APSKLIDGRLAACNLACEGLSGPSSALDVSQ------RKL 157
+ + E+ A+ L GR + E L +S+ L
Sbjct: 285 NFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNL 344
Query: 158 YIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPE 217
Y+ +L V E L F +G + V + +SRGFGFV Y E A A+ +
Sbjct: 345 YLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMN 403
Query: 218 KTLGGR 223
+ GR
Sbjct: 404 GKMIGR 409
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 10/167 (5%)
Query: 56 IASADPVHR-----KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFI 110
+++ DP R +F++ L + ++ L F G I V D G+S+GYGF+
Sbjct: 133 LSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFV 191
Query: 111 TYKNMESTQAALRAPSKLI--DGRLAACNLACEGLSGPSSALDV-SQRKLYIGSLSPEVT 167
++ E+ QAA+ + ++ D ++ + S + V S +Y+ +L E+T
Sbjct: 192 QFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEIT 251
Query: 168 SEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID 214
+ L FG++G+I V D+ N SR FGFV + + EAA A++
Sbjct: 252 DDELKKTFGKYGDISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVE 297
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 15/186 (8%)
Query: 51 EEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFI 110
+ +S + A P ++V+ L + + L F ++G+I V+ D+ +G SR +GF+
Sbjct: 226 DRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFV 284
Query: 111 TYKNMESTQAALR-------APSKLIDGRLAACNLACEGLSGPSSALDVSQ------RKL 157
+ + E+ A+ L GR + E L +S+ L
Sbjct: 285 NFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNL 344
Query: 158 YIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPE 217
Y+ +L V E L F +G + V + +SRGFGFV Y E A A+ +
Sbjct: 345 YLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMN 403
Query: 218 KTLGGR 223
+ GR
Sbjct: 404 GKMIGR 409
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 66/105 (62%), Gaps = 6/105 (5%)
Query: 38 LLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIY 97
L A++ PS+ + I+ ++S+ KLF+ G+A++ ++L AF ++GE+ + VI
Sbjct: 19 LNAQVSLSSPSLFQAIRCMSSS-----KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVIL 73
Query: 98 DKATGKSRGYGFITYKNMESTQAALRA-PSKLIDGRLAACNLACE 141
D+ TG+SRG+GF+T+ + E+ +A++A + + GR+ N A +
Sbjct: 74 DRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYAND 118
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 152 VSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKK 211
+S KL+IG ++ + + L F ++GE+ + V D++T SRGFGFVT+ ++EAA
Sbjct: 37 MSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASS 96
Query: 212 AIDDPE-KTLGGRTIIVKFA 230
AI + + L GR + V +A
Sbjct: 97 AIQALDGRDLHGRVVKVNYA 116
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 8/161 (4%)
Query: 60 DPVHRK-----LFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKN 114
DP R+ +F++ L + + L F G I V D ++G+S+GYGF+ Y N
Sbjct: 115 DPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYAN 173
Query: 115 MESTQAAL-RAPSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLS 173
ES Q A+ + L++ + S+A +Y+ +L+ T + L +
Sbjct: 174 EESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKN 233
Query: 174 FFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID 214
FG +G+I V D + S+GFGFV ++ + A +A++
Sbjct: 234 AFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAARAVE 273
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 14/154 (9%)
Query: 66 LFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAP 125
L+V L +N + L AF + G + V D T +S GYG++ + N + A++
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ-- 95
Query: 126 SKLIDGRLAACNLACEGLSGPSSALDVSQRK-----LYIGSLSPEVTSEVLLSFFGRHGE 180
L L + + S D S R+ ++I +L + + L F G
Sbjct: 96 ------ELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGN 149
Query: 181 IEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID 214
I VA D + S+G+GFV Y E+A+KAI+
Sbjct: 150 IVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIE 182
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 79/181 (43%), Gaps = 20/181 (11%)
Query: 42 LGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKAT 101
+GSQ P A ++KS L++ L + + F + GE VI +K T
Sbjct: 48 IGSQNPGSASDVKS----------LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLT 97
Query: 102 GKSRGYGFITYKNMESTQAALRA------PSKLIDGRLAACNLACEGLSGPSSALDVSQR 155
G+S GYGFI + + + L+ PS RL N A G +
Sbjct: 98 GQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRL---NWAQAGAGEKRFQTEGPDH 154
Query: 156 KLYIGSLSPEVTSEVLLSFFGR-HGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID 214
+++G L+PEVT +L F +G ++ V D+ T S+G+GFV + +A+
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMT 214
Query: 215 D 215
+
Sbjct: 215 E 215
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 31/212 (14%)
Query: 54 KSIASADPVHRKLFVRGLAWNTSSETLCAAFQE-HGEIEEGAVIYDKATGKSRGYGFITY 112
K + P H +FV LA + L F+ +G ++ V+ D+ TG+S+GYGF+ +
Sbjct: 145 KRFQTEGPDH-TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRF 203
Query: 113 KNMESTQAALRAPSKLIDGRLAACNLACEGLSGPSSAL------------------DVSQ 154
+ E+ Q +RA +++ +G+ + G + +AL D +
Sbjct: 204 AD-ENEQ--MRAMTEM-NGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNN 259
Query: 155 RKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID 214
+++G L VT + L S FG+ GE+ + K GFV Y +A+ A+
Sbjct: 260 TTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRC------GFVQYANKASAEHALS 313
Query: 215 DPEKT-LGGRTIIVKFAGAHKGKTGQPPFPAG 245
T LGG++I + + + ++ Q + G
Sbjct: 314 VLNGTQLGGQSIRLSWGRSPNKQSDQAQWNGG 345
>AT2G47310.1 | Symbols: | flowering time control protein-related /
FCA gamma-related | chr2:19423791-19426846 FORWARD
LENGTH=512
Length = 512
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 109/255 (42%), Gaps = 34/255 (13%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KL+V ++ + + F+++G + E + DK TG+ Y FI YK +E AA+ A
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIAA 170
Query: 125 -------PSKLIDGRLAACNLACEGLS-GPSSALDVSQRKLYIGSLSPEVTSEVLLSFFG 176
P +++ ++ E + P D KLY+ L+ + T + F
Sbjct: 171 LTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPD--NPKLYVRCLNKQTTKMEVNEVFS 228
Query: 177 RHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGG--------RTIIVK 228
R+G IE+ +A D D + RG+ FV + E A AI K L G + +IV+
Sbjct: 229 RYGIIEDIYMALD-DMKICRGYAFVQFSCKEMALAAI----KALNGLFTIRGSDQPLIVR 283
Query: 229 FAGAHKGKTGQPPFPAGVPMAALPMTPGYVQSGKPHISSAPSVGYTYPQPVAPYPLASYP 288
FA K + G+ + TP +Q P+ S P + +P P + +
Sbjct: 284 FADPKKPRLGE--------QRSTFNTPPAMQHFDPNWHSQPYPQWENKEPAPPRVVQHH- 334
Query: 289 IPPLTAPPSAYPAQG 303
++ P+ +P Q
Sbjct: 335 --DFSSQPNHFPHQN 347
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 61 PVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQA 120
V + FV GLAW T+ E L F + G++ + +I D+ +G+SRG+GF+T+K+ ++ +
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 121 ALRAPS-KLIDGRLAACNLA 139
A+ + K +DGR+ N A
Sbjct: 63 AIEEMNGKELDGRVITVNEA 82
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
+ ++G L+ E L F + G++ + + D+++ SRGFGFVT+K +A + AI++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 216 PE-KTLGGRTIIVK 228
K L GR I V
Sbjct: 67 MNGKELDGRVITVN 80
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 61 PVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQA 120
V + FV GLAW T+ E L F + G++ + +I D+ +G+SRG+GF+T+K+ ++ +
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 121 ALRAPS-KLIDGRLAACNLA 139
A+ + K +DGR+ N A
Sbjct: 63 AIEEMNGKELDGRVITVNEA 82
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
+ ++G L+ E L F + G++ + + D+++ SRGFGFVT+K +A + AI++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 216 PE-KTLGGRTIIVK 228
K L GR I V
Sbjct: 67 MNGKELDGRVITVN 80
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 56 IASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNM 115
+AS D V + FV GLAW T L AF ++G++ + +I D+ TG+SRG+GF+T+K+
Sbjct: 1 MASGD-VEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDE 59
Query: 116 ESTQAALRAPS-KLIDGRLAACNLA 139
++ + A+ + + +DGR N A
Sbjct: 60 KAMKDAIEGMNGQDLDGRSITVNEA 84
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
+ ++G L+ L + F ++G++ + + D++T SRGFGFVT+K +A K AI+
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 216 PE-KTLGGRTIIVK 228
+ L GR+I V
Sbjct: 69 MNGQDLDGRSITVN 82
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 56 IASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNM 115
+AS D V + FV GLAW T L AF ++G++ + +I D+ TG+SRG+GF+T+K+
Sbjct: 1 MASGD-VEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDE 59
Query: 116 ESTQAALRAPS-KLIDGRLAACNLA 139
++ + A+ + + +DGR N A
Sbjct: 60 KAMKDAIEGMNGQDLDGRSITVNEA 84
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
+ ++G L+ L + F ++G++ + + D++T SRGFGFVT+K +A K AI+
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 216 PE-KTLGGRTIIVK 228
+ L GR+I V
Sbjct: 69 MNGQDLDGRSITVN 82
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 18/199 (9%)
Query: 47 PSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRG 106
P+ A+EI R L++ L + L F GE+ VI +K TG+ G
Sbjct: 55 PTTADEI----------RTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEG 104
Query: 107 YGFITYKNMESTQAALR----APSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSL 162
YGFI + + + + L+ AP +L N A LS D +++G L
Sbjct: 105 YGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWAS--LSSGDKRDDSPDYTIFVGDL 162
Query: 163 SPEVTSEVLL-SFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKT-L 220
+ +VT +LL +F + ++ V D+ T ++G+GFV + +A+ +
Sbjct: 163 AADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPC 222
Query: 221 GGRTIIVKFAGAHKGKTGQ 239
R + + A + KG TGQ
Sbjct: 223 STRPMRIGPAASKKGVTGQ 241
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 18/199 (9%)
Query: 47 PSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRG 106
P+ A+EI R L++ L + L F GE+ VI +K TG+ G
Sbjct: 55 PTTADEI----------RTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEG 104
Query: 107 YGFITYKNMESTQAALR----APSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSL 162
YGFI + + + + L+ AP +L N A LS D +++G L
Sbjct: 105 YGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWAS--LSSGDKRDDSPDYTIFVGDL 162
Query: 163 SPEVTSEVLL-SFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKT-L 220
+ +VT +LL +F + ++ V D+ T ++G+GFV + +A+ +
Sbjct: 163 AADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPC 222
Query: 221 GGRTIIVKFAGAHKGKTGQ 239
R + + A + KG TGQ
Sbjct: 223 STRPMRIGPAASKKGVTGQ 241
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
Query: 58 SADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMES 117
S DP +R F+ GLAW TS L AF+++G + E V+ DK +G+SRG+GFIT+ ++
Sbjct: 2 SEDPEYR-CFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60
Query: 118 TQAALRAPSKL-IDGRLAACNLA--CEGLSGPSSALDVSQRKLY 158
A+ A + + +DGR + A +G +G + D + + Y
Sbjct: 61 MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGY 104
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 78/177 (44%), Gaps = 19/177 (10%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
++V+ L+ + S E L F E G + VI GKS+G+GF+ ++N + A+ A
Sbjct: 225 NVYVKNLSESLSDEELNKVFGEFG-VTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDA 283
Query: 125 PS-KLIDGRL-----------AACNLACEGLSGPSSALDVSQ-RKLYIGSLSPEVTSEVL 171
+ K D + L + A D SQ LY+ +L VT + L
Sbjct: 284 LNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKL 343
Query: 172 LSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVK 228
F G I V D + VSRG GFV + T E A +AI + + G+ I+ K
Sbjct: 344 REHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITE----MNGKMIVTK 395
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 70/154 (45%), Gaps = 14/154 (9%)
Query: 66 LFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAP 125
L+V L + L AF + G++ V D T +S GYG++ Y + Q A RA
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYA---TPQDASRAL 103
Query: 126 SKLIDGRLAACNLACEGLSGPSSALDVSQRK-----LYIGSLSPEVTSEVLLSFFGRHGE 180
++L A N + S D S RK ++I +L + + L F G
Sbjct: 104 NEL---NFMALN--GRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGP 158
Query: 181 IEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID 214
I VA D + S+G+GFV Y T EAA+ AID
Sbjct: 159 ILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAID 191
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 78/177 (44%), Gaps = 19/177 (10%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
++V+ L+ + S E L F E G + VI GKS+G+GF+ ++N + A+ A
Sbjct: 225 NVYVKNLSESLSDEELNKVFGEFG-VTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDA 283
Query: 125 PS-KLIDGRL-----------AACNLACEGLSGPSSALDVSQ-RKLYIGSLSPEVTSEVL 171
+ K D + L + A D SQ LY+ +L VT + L
Sbjct: 284 LNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKL 343
Query: 172 LSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVK 228
F G I V D + VSRG GFV + T E A +AI + + G+ I+ K
Sbjct: 344 REHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITE----MNGKMIVTK 395
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 70/154 (45%), Gaps = 14/154 (9%)
Query: 66 LFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAP 125
L+V L + L AF + G++ V D T +S GYG++ Y + Q A RA
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYA---TPQDASRAL 103
Query: 126 SKLIDGRLAACNLACEGLSGPSSALDVSQRK-----LYIGSLSPEVTSEVLLSFFGRHGE 180
++L A N + S D S RK ++I +L + + L F G
Sbjct: 104 NEL---NFMALN--GRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGP 158
Query: 181 IEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID 214
I VA D + S+G+GFV Y T EAA+ AID
Sbjct: 159 ILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAID 191
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 61.6 bits (148), Expect = 6e-10, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 62 VHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAA 121
V + FV GLAW T+ E L F + G++ + +I D+ +G+SRG+GF+T+K+ ++ + A
Sbjct: 4 VEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
Query: 122 LRAPS-KLIDGRLAACNLACEGLSG 145
+ + K +DGR+ N A SG
Sbjct: 64 IEEMNGKELDGRVITVNEAQSRGSG 88
Score = 49.3 bits (116), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 154 QRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAI 213
+ + ++G L+ E L F + G++ + + D+++ SRGFGFVT+K +A + AI
Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
Query: 214 DDPE-KTLGGRTIIVKFA 230
++ K L GR I V A
Sbjct: 65 EEMNGKELDGRVITVNEA 82
>AT1G29400.2 | Symbols: AML5, ML5 | MEI2-like protein 5 |
chr1:10290393-10293696 REVERSE LENGTH=800
Length = 800
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 119/267 (44%), Gaps = 48/267 (17%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR 123
R LFVR + N L A F+++G+I +Y T K RG+ I+Y ++ S + A+R
Sbjct: 168 RTLFVRNINSNVEDSELTALFEQYGDIR---TLY--TTCKHRGFVMISYYDIRSARMAMR 222
Query: 124 A-PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIE 182
+ +K + R + + PS D++Q L + +L P ++++ L FG HGEI+
Sbjct: 223 SLQNKPLRRRKLDIHFSIPK-DNPSEK-DMNQGTLVVFNLDPSISNDDLHGIFGAHGEIK 280
Query: 183 EGSVAYDKDTNVSRGFGFVTY---KTTEAAKKAIDDPEKTLGGRTIIVKFAGAHKGKTGQ 239
E ++T R FV + + EAA KA++ E + G+ I V +
Sbjct: 281 E-----IRETPHKRHHKFVEFYDVRGAEAALKALNRCE--IAGKRIKV-----------E 322
Query: 240 PPFPAGVPMAALPMTPGYVQSGKPHISSAPSVGYTYPQPVAPYPLASYPIP---PLTAPP 296
P P G + + +++ H P +G P+A P P+ PL +P
Sbjct: 323 PSRPGGARRSLMLQLNQDLENDDLHY--LPMIG----SPMANSP----PMQGNWPLNSPV 372
Query: 297 SAYPAQGQVPYAPVSAKKDQLGVPPTQ 323
P Q + +PV G+ PT+
Sbjct: 373 EGSPLQSVLSRSPV------FGLSPTR 393
>AT1G29400.1 | Symbols: AML5, ML5 | MEI2-like protein 5 |
chr1:10290393-10293696 REVERSE LENGTH=800
Length = 800
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 119/267 (44%), Gaps = 48/267 (17%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR 123
R LFVR + N L A F+++G+I +Y T K RG+ I+Y ++ S + A+R
Sbjct: 168 RTLFVRNINSNVEDSELTALFEQYGDIR---TLY--TTCKHRGFVMISYYDIRSARMAMR 222
Query: 124 A-PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIE 182
+ +K + R + + PS D++Q L + +L P ++++ L FG HGEI+
Sbjct: 223 SLQNKPLRRRKLDIHFSIPK-DNPSEK-DMNQGTLVVFNLDPSISNDDLHGIFGAHGEIK 280
Query: 183 EGSVAYDKDTNVSRGFGFVTY---KTTEAAKKAIDDPEKTLGGRTIIVKFAGAHKGKTGQ 239
E ++T R FV + + EAA KA++ E + G+ I V +
Sbjct: 281 E-----IRETPHKRHHKFVEFYDVRGAEAALKALNRCE--IAGKRIKV-----------E 322
Query: 240 PPFPAGVPMAALPMTPGYVQSGKPHISSAPSVGYTYPQPVAPYPLASYPIP---PLTAPP 296
P P G + + +++ H P +G P+A P P+ PL +P
Sbjct: 323 PSRPGGARRSLMLQLNQDLENDDLHY--LPMIG----SPMANSP----PMQGNWPLNSPV 372
Query: 297 SAYPAQGQVPYAPVSAKKDQLGVPPTQ 323
P Q + +PV G+ PT+
Sbjct: 373 EGSPLQSVLSRSPV------FGLSPTR 393
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 133 LAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDT 192
L A N +G L ++ K+++G LSP E+L FG G+I + V D+++
Sbjct: 20 LQASNAMLQG------NLSLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRES 73
Query: 193 NVSRGFGFVTYKTTEAAKKAIDDPE-KTLGGRTI 225
+SRGFGFVTY + E A A+ + K L GR I
Sbjct: 74 GLSRGFGFVTYDSIEVANNAMQAMQNKELDGRII 107
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
K+FV GL+ +T E L AF G+I + V+ D+ +G SRG+GF+TY ++E A++A
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 125 -PSKLIDGRLAACN 137
+K +DGR+ +
Sbjct: 97 MQNKELDGRIIGVH 110
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 47 PSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRG 106
S+ + I+ ++S+ K+FV G++++T L AF ++GE+ + +I D+ TG+SRG
Sbjct: 22 SSMLQSIRCMSSS-----KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRG 76
Query: 107 YGFITYKNMESTQAALRAPSKLIDGRLAACNLACE 141
+ F+T+ + E A++ + + GR N A E
Sbjct: 77 FAFVTFTSTEEASNAMQLDGQDLHGRRIRVNYATE 111
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 152 VSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKK 211
+S K+++G +S L F ++GE+ + + D++T SRGF FVT+ +TE A
Sbjct: 31 MSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASN 90
Query: 212 AIDDPEKTLGGRTIIVKFA 230
A+ + L GR I V +A
Sbjct: 91 AMQLDGQDLHGRRIRVNYA 109
>AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7331739-7333749 FORWARD LENGTH=374
Length = 374
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR 123
+KLF+ GL++ TS +TL AAF+ GE+ E +I DK + +S+GY F+ Y E+ AL+
Sbjct: 282 KKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALK 341
Query: 124 APS-KLIDGRLAACNLA 139
+ K+I+G + ++A
Sbjct: 342 EMNGKIINGWMIVVDVA 358
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 117/281 (41%), Gaps = 67/281 (23%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLFV + + S L FQE ++E +I DK T SRG F+ + E
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEA------ 72
Query: 125 PSKLIDGRLAACNLACEGLSGPSSALDVS---------QRKLYIGSLSPEVTSEVLLSFF 175
KL++ AC+ + L G +S L V + KL++G L V+ + S F
Sbjct: 73 -DKLVN----ACHNK-KTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLF 126
Query: 176 GRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID--DPEKTLGGRTI--IVKFAG 231
++G I++ + S+G F+ Y+T E A A++ + + + G T+ +VK+A
Sbjct: 127 SKYGTIKDLQILRGAQ-QTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWAD 185
Query: 232 AHKGK----------------TGQPPFPAGVPMAALPMTPGYVQSGKPHISSAPSVGYTY 275
+ + G P P+ ALPM GYV P GY Y
Sbjct: 186 TERERHTRRLQKAQSHIARLGNGDPTNPS--LFGALPM--GYV---------PPYNGYGY 232
Query: 276 PQPVAPYPLASYPIPPLTAPPSAYPAQGQVPYAPVSAKKDQ 316
QP Y Y +PP+ Q Q ++ + A+ +Q
Sbjct: 233 HQPPGTY---GYMLPPI---------QNQAAFSNMIAQPNQ 261
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 13/166 (7%)
Query: 56 IASADPVHR-----KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFI 110
+ DP +R +FV+ L + ++ LC F G++ V D A+G S+GYGF+
Sbjct: 18 FSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARD-ASGVSKGYGFV 76
Query: 111 TYKNMES--TQAALRAPSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTS 168
+ + S T + + + + C G S +Y+ +L T
Sbjct: 77 QFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWDKSRVFT----NVYVKNLVETATD 132
Query: 169 EVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID 214
L FG GEI V D + SR FGFV ++ EAA AI+
Sbjct: 133 ADLKRLFGEFGEITSAVVMKDGEGK-SRRFGFVNFEKAEAAVTAIE 177
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 104/265 (39%), Gaps = 41/265 (15%)
Query: 62 VHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAA 121
V ++V+ L + L F E GEI V+ D GKSR +GF+ N E +AA
Sbjct: 117 VFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFV---NFEKAEAA 172
Query: 122 LRAPSKL----ID------GRLAACNLACEGLSGPSS----ALDVSQRK---LYIGSLSP 164
+ A K+ +D GR E L D+ RK LY+ +L
Sbjct: 173 VTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDD 232
Query: 165 EVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPE-KTLGGR 223
V + L F G I V + +S+G GFV + T+E A KA+ K +G +
Sbjct: 233 SVDNTKLEELFSEFGTITSCKVMVHSN-GISKGVGFVEFSTSEEASKAMLKMNGKMVGNK 291
Query: 224 TIIVKFAGA---HKGK-----TGQPPFPAGVPMAALPMTPGYVQSGKPHISSAPSVGYTY 275
I V A HK PP P P+ + + P + S P GY +
Sbjct: 292 PIYVSLAQCKEQHKLHLQTQFNNPPPSPHQQPIFSQVVAPATMLS-----QQTPLRGYNF 346
Query: 276 PQPVAPYPLASYPIPPLTAPPSAYP 300
PY + +P + PP + P
Sbjct: 347 ----QPYSMCGSRMPN-SCPPISIP 366
>AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304106 REVERSE LENGTH=371
Length = 371
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 19/156 (12%)
Query: 136 CNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVS 195
N + +G GPS++ +K+++G L+ VT +F + G I + V YD T
Sbjct: 32 SNSSLQGSPGPSNS-----KKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRP 86
Query: 196 RGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVKFAGAHKGKTGQPPFPAGVPMAALPMTP 255
RGFGF++Y + EA K + L G+ + VK A P + + +
Sbjct: 87 RGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA-----------VPKDMALNTMRNQM 135
Query: 256 GYVQSGKPHISSAPSVGYTYPQPVAPYPLASYPIPP 291
G ISS + Y Q +P P++ Y + P
Sbjct: 136 NVNSFGTSRISSLLN---EYTQGFSPSPISGYGVKP 168
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR 123
+K+FV GLA + + F + G I + V+YD T + RG+GFI+Y + E+ L+
Sbjct: 46 KKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQ 105
Query: 124 APSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVL 171
++G++ LA AL+ + ++ + S S +L
Sbjct: 106 KTFHELNGKMVEVKLAVP----KDMALNTMRNQMNVNSFGTSRISSLL 149
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 98/231 (42%), Gaps = 25/231 (10%)
Query: 17 FTSVEDLRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTS 76
F + + + IE L L D +G P + +E + A+ ++V+ L+ T+
Sbjct: 181 FDTEDSAKNAIEKLNGKVLNDKQIFVG---PFLRKEERESAADKMKFTNVYVKNLSEATT 237
Query: 77 SETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAPS-KLIDGRLAA 135
+ L F ++G I V+ D GKSR +GF+ ++N E A+ A + K D +
Sbjct: 238 DDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWY 296
Query: 136 CNLACEGLSGPSSALDVSQR---------------KLYIGSLSPEVTSEVLLSFFGRHGE 180
A + L++S+R LY+ +L VT E L F G
Sbjct: 297 VGKAQK---KSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGT 353
Query: 181 IEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPE-KTLGGRTIIVKFA 230
I V D + S+G GFV + A + +++ K +GG+ + V A
Sbjct: 354 ITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALA 403
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 7/164 (4%)
Query: 66 LFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAP 125
L+V L +N + L F E ++ V D AT S GYG++ Y N + + A++
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 126 S-KLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEG 184
+ ++G++ + S S + L++ +L V ++ L F G I
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVG----NLFVKNLDKSVDNKTLHEAFSGCGTIVSC 163
Query: 185 SVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPE-KTLGGRTIIV 227
VA D SRG+GFV + T ++AK AI+ K L + I V
Sbjct: 164 KVATDH-MGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFV 206
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 58.9 bits (141), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
++Y+G+LSP T ++L F +G + + V D+ T+ SRGFGFVTY + A+ A+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 216 PE-KTLGGRTIIVKFAG 231
+ K L GR + VK G
Sbjct: 64 MDGKELNGRRVSVKLFG 80
>AT2G42890.3 | Symbols: AML2, ML2 | MEI2-like 2 |
chr2:17850632-17854205 FORWARD LENGTH=830
Length = 830
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 121/273 (44%), Gaps = 34/273 (12%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR 123
R LFVR + + L A F+ GEI +Y KSRG+ I+Y ++ + AA+R
Sbjct: 185 RTLFVRNINSSVEDSELSALFEPFGEIRS---LYTAC--KSRGFVMISYYDIRAAHAAMR 239
Query: 124 A-PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIE 182
A + L+ R + + PS D++Q L I ++ V+++ LL FG +GEI
Sbjct: 240 ALQNTLLRKRTLDIHFSIPK-ENPSEK-DMNQGTLVIFNVDTTVSNDELLQLFGAYGEIR 297
Query: 183 EGSVAYDKDTNVSRGFGFVTY---KTTEAAKKAIDDPEKTLGGRTIIVKFA---GAHK-- 234
E ++T R F+ Y + E A KA++ E +GG+ I ++ + GA +
Sbjct: 298 E-----IRETPNRRFHRFIEYYDVRDAETALKALNRSE--IGGKCIKLELSRPGGARRLS 350
Query: 235 --------GKTGQPPFPAGVPMAALPMTPGYVQSGKPHISSAPSVGYTYPQPVAPY-PLA 285
+T F V PG G P + +PS +T P + P+
Sbjct: 351 VPSQSQDLERTEVTNFYNQVGSHVANSPPGNWPIGSP-VKGSPSHAFTRPHGLGMVRPVN 409
Query: 286 SYPIPPLTAPPSAYPAQGQVPYAPVSAKKDQLG 318
S +P L + A+P+ ++PVS + L
Sbjct: 410 SDNMPGLASILPAHPSSFH-GFSPVSNDQGLLN 441
>AT2G42890.2 | Symbols: AML2, ML2 | MEI2-like 2 |
chr2:17850632-17854205 FORWARD LENGTH=830
Length = 830
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 121/273 (44%), Gaps = 34/273 (12%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR 123
R LFVR + + L A F+ GEI +Y KSRG+ I+Y ++ + AA+R
Sbjct: 185 RTLFVRNINSSVEDSELSALFEPFGEIRS---LYTAC--KSRGFVMISYYDIRAAHAAMR 239
Query: 124 A-PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIE 182
A + L+ R + + PS D++Q L I ++ V+++ LL FG +GEI
Sbjct: 240 ALQNTLLRKRTLDIHFSIPK-ENPSEK-DMNQGTLVIFNVDTTVSNDELLQLFGAYGEIR 297
Query: 183 EGSVAYDKDTNVSRGFGFVTY---KTTEAAKKAIDDPEKTLGGRTIIVKFA---GAHK-- 234
E ++T R F+ Y + E A KA++ E +GG+ I ++ + GA +
Sbjct: 298 E-----IRETPNRRFHRFIEYYDVRDAETALKALNRSE--IGGKCIKLELSRPGGARRLS 350
Query: 235 --------GKTGQPPFPAGVPMAALPMTPGYVQSGKPHISSAPSVGYTYPQPVAPY-PLA 285
+T F V PG G P + +PS +T P + P+
Sbjct: 351 VPSQSQDLERTEVTNFYNQVGSHVANSPPGNWPIGSP-VKGSPSHAFTRPHGLGMVRPVN 409
Query: 286 SYPIPPLTAPPSAYPAQGQVPYAPVSAKKDQLG 318
S +P L + A+P+ ++PVS + L
Sbjct: 410 SDNMPGLASILPAHPSSFH-GFSPVSNDQGLLN 441
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 17/213 (7%)
Query: 34 QLVDLLAKLGSQYPSIAEEIKSIASADPVH-----RKLFVRGLAWNTSSETLCAAFQEHG 88
+LV +L + + S EE + RKLFV L W+ S + F + G
Sbjct: 60 RLVSVLCSVAEKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCG 119
Query: 89 EIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL-RAPSKLIDGRLAACNLACEGLS-GP 146
+ +I K GK+RG+ F+T + E QAA+ + + + GR+ + + A P
Sbjct: 120 TVNNVEIIRQK-DGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTP 178
Query: 147 SSALDV-------SQRKLYIGSLSPEVTSEVLLSFF-GRHGEIEEGSVAYDKDTNVSRGF 198
S D+ ++ KLY+ +L+ + S L F V + S G+
Sbjct: 179 KSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGY 238
Query: 199 GFVTYKTTEAAKKAIDDPE-KTLGGRTIIVKFA 230
GFV++ T E A+ AI K + GR I +KF+
Sbjct: 239 GFVSFATREEAENAITKLNGKEIMGRPITLKFS 271
>AT2G42890.1 | Symbols: AML2, ML2 | MEI2-like 2 |
chr2:17850077-17854205 FORWARD LENGTH=843
Length = 843
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 121/273 (44%), Gaps = 34/273 (12%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR 123
R LFVR + + L A F+ GEI +Y KSRG+ I+Y ++ + AA+R
Sbjct: 198 RTLFVRNINSSVEDSELSALFEPFGEIRS---LYTAC--KSRGFVMISYYDIRAAHAAMR 252
Query: 124 A-PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIE 182
A + L+ R + + PS D++Q L I ++ V+++ LL FG +GEI
Sbjct: 253 ALQNTLLRKRTLDIHFSIPK-ENPSEK-DMNQGTLVIFNVDTTVSNDELLQLFGAYGEIR 310
Query: 183 EGSVAYDKDTNVSRGFGFVTY---KTTEAAKKAIDDPEKTLGGRTIIVKFA---GAHK-- 234
E ++T R F+ Y + E A KA++ E +GG+ I ++ + GA +
Sbjct: 311 E-----IRETPNRRFHRFIEYYDVRDAETALKALNRSE--IGGKCIKLELSRPGGARRLS 363
Query: 235 --------GKTGQPPFPAGVPMAALPMTPGYVQSGKPHISSAPSVGYTYPQPVAPY-PLA 285
+T F V PG G P + +PS +T P + P+
Sbjct: 364 VPSQSQDLERTEVTNFYNQVGSHVANSPPGNWPIGSP-VKGSPSHAFTRPHGLGMVRPVN 422
Query: 286 SYPIPPLTAPPSAYPAQGQVPYAPVSAKKDQLG 318
S +P L + A+P+ ++PVS + L
Sbjct: 423 SDNMPGLASILPAHPSSFH-GFSPVSNDQGLLN 454
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 106/255 (41%), Gaps = 31/255 (12%)
Query: 66 LFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA- 124
++V+ L + + L F ++G + V+ D G+SRG+GF+ + N E+ + A+ +
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAMESL 262
Query: 125 ------PSKLIDGRLAACNLACEGLSGPSSALDVSQ-----RKLYIGSLSPEVTSEVLLS 173
KL G+ + E L S +++ LY+ +LS + L
Sbjct: 263 CGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLRE 322
Query: 174 FFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTL-GGRTIIVKFAGA 232
FG +G+I V ++ S+GFGFV + E +K+A L G+ I+V+ A
Sbjct: 323 IFGCYGQIVSAKVMCHENGR-SKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAER 381
Query: 233 HKGKTGQPPFPAGVPMAALPMTPGYVQSGKPHISSAPSVGYTYPQPVAPYPLASY-PIPP 291
+ + + Y Q+ + APS + QPV Y +SY P
Sbjct: 382 KEDR--------------IKRLQQYFQAQPRQYTQAPSAP-SPAQPVLSYVSSSYGCFQP 426
Query: 292 LTAPPSAYPAQGQVP 306
S Y QVP
Sbjct: 427 FQVGTSYYYMGNQVP 441
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 10/153 (6%)
Query: 66 LFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAP 125
L+V+ L + +S L F G I V+ + G+S+G+GF+ + ++ Q+A+ A
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVV--EENGQSKGFGFVQF---DTEQSAVSAR 168
Query: 126 SKLIDGRLAACNLACEGLSGPSS----ALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEI 181
S L + L A + +Y+ +L VT + L + F ++G +
Sbjct: 169 SALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTV 228
Query: 182 EEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID 214
V D SRGFGFV + E AKKA++
Sbjct: 229 SSVVVMRD-GMGRSRGFGFVNFCNPENAKKAME 260
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL-R 123
KLF+ GL+W T +L AF G++ + VI D+ TG+SRG+GF+ + + + AA+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 124 APSKLIDGRLAACN 137
K ++GR N
Sbjct: 96 MDGKELNGRHIRVN 109
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 149 ALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEA 208
+L + KL+IG LS L F G++ + V D++T SRGFGFV + A
Sbjct: 29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGA 88
Query: 209 AKKAIDDPE-KTLGGRTIIVK 228
A AI + + K L GR I V
Sbjct: 89 ATAAISEMDGKELNGRHIRVN 109
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL-R 123
KLF+ GL+W T +L AF G++ + VI D+ TG+SRG+GF+ + + + AA+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 124 APSKLIDGRLAACN 137
K ++GR N
Sbjct: 96 MDGKELNGRHIRVN 109
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 149 ALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEA 208
+L + KL+IG LS L F G++ + V D++T SRGFGFV + A
Sbjct: 29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGA 88
Query: 209 AKKAIDDPE-KTLGGRTIIVK 228
A AI + + K L GR I V
Sbjct: 89 ATAAISEMDGKELNGRHIRVN 109
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL-R 123
KLF+ GL+W T +L AF G++ + VI D+ TG+SRG+GF+ + + + AA+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 124 APSKLIDGRLAACN 137
K ++GR N
Sbjct: 96 MDGKELNGRHIRVN 109
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 149 ALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEA 208
+L + KL+IG LS L F G++ + V D++T SRGFGFV + A
Sbjct: 29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGA 88
Query: 209 AKKAIDDPE-KTLGGRTIIVK 228
A AI + + K L GR I V
Sbjct: 89 ATAAISEMDGKELNGRHIRVN 109
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
KL+IG LS T + L F + G++ E + D+ ++ S+GFGFVT+ + + A+KA+ +
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 216 PE-KTLGGRTIIVKFAGAHKGKTGQPPFP 243
+ L GRTI V +A A + G +P
Sbjct: 95 FNGQQLNGRTIFVDYAKAKQSLGGGGGYP 123
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 39 LAKLGSQYPSIAEEIKSIASADPVHR-----KLFVRGLAWNTSSETLCAAFQEHGEIEEG 93
LA++G ++ I S AS R KLF+ GL++ T+ + L AF + G++ E
Sbjct: 4 LARIGGRHLKSVCLINSSASCFFTQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEA 63
Query: 94 AVIYDKATGKSRGYGFITYKNMESTQAAL 122
++ D+ + +S+G+GF+T+ + + Q AL
Sbjct: 64 QIVMDRVSDRSKGFGFVTFASADEAQKAL 92
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL-R 123
KLF+ GL+W T +L AF G++ + VI D+ TG+SRG+GF+ + + + AA+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 124 APSKLIDGRLAACN 137
K ++GR N
Sbjct: 96 MDGKELNGRHIRVN 109
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 149 ALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEA 208
+L + KL+IG LS L F G++ + V D++T SRGFGFV + A
Sbjct: 29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGA 88
Query: 209 AKKAIDDPE-KTLGGRTIIVK 228
A AI + + K L GR I V
Sbjct: 89 ATAAISEMDGKELNGRHIRVN 109
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
+LY+G+LS V L + F G++ E V YD+D+ S+GFGFVT +++ +KAI+
Sbjct: 279 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 338
Query: 216 PE-KTLGGRTIIVKFAGAH 233
L GR I V A A
Sbjct: 339 LNGADLDGRQIRVSEAEAR 357
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 50 AEEIKSIASAD---PVHR-------KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDK 99
EE A D PV R KLFV L++N S L F+ G +E VIYDK
Sbjct: 75 VEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDK 134
Query: 100 ATGKSRGYGFIT 111
TG+SRG+GF+T
Sbjct: 135 VTGRSRGFGFVT 146
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
+L+V L+W L F E G++ E VIYD+ +G+S+G+GF+T + + Q A+ +
Sbjct: 279 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 338
Query: 125 PSKL-IDGR 132
+ +DGR
Sbjct: 339 LNGADLDGR 347
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
+LY+G+LS V L + F G++ E V YD+D+ S+GFGFVT +++ +KAI+
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 216 PE-KTLGGRTIIVKFAGAH 233
L GR I V A A
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 50 AEEIKSIASAD---PVHR-------KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDK 99
EE A D PV R KLFV L++N S L F+ G +E VIYDK
Sbjct: 75 VEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDK 134
Query: 100 ATGKSRGYGFIT 111
TG+SRG+GF+T
Sbjct: 135 VTGRSRGFGFVT 146
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
+L+V L+W L F E G++ E VIYD+ +G+S+G+GF+T + + Q A+ +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 125 PSKL-IDGR 132
+ +DGR
Sbjct: 318 LNGADLDGR 326
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
+LY+G+LS V L + F G++ E V YD+D+ S+GFGFVT +++ +KAI+
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 216 PE-KTLGGRTIIVKFAGAH 233
L GR I V A A
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 50 AEEIKSIASAD---PVHR-------KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDK 99
EE A D PV R KLFV L++N S L F+ G +E VIYDK
Sbjct: 75 VEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDK 134
Query: 100 ATGKSRGYGFIT 111
TG+SRG+GF+T
Sbjct: 135 VTGRSRGFGFVT 146
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
+L+V L+W L F E G++ E VIYD+ +G+S+G+GF+T + + Q A+ +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 125 PSKL-IDGR 132
+ +DGR
Sbjct: 318 LNGADLDGR 326
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
+LY+G+LS V L + F G++ E V YD+D+ S+GFGFVT +++ +KAI+
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 216 PE-KTLGGRTIIVKFAGAH 233
L GR I V A A
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 50 AEEIKSIASAD---PVHR-------KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDK 99
EE A D PV R KLFV L++N S L F+ G +E VIYDK
Sbjct: 75 VEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDK 134
Query: 100 ATGKSRGYGFIT 111
TG+SRG+GF+T
Sbjct: 135 VTGRSRGFGFVT 146
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
+L+V L+W L F E G++ E VIYD+ +G+S+G+GF+T + + Q A+ +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 125 PSKL-IDGR 132
+ +DGR
Sbjct: 318 LNGADLDGR 326
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 22/199 (11%)
Query: 59 ADPV--HRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNME 116
ADP R +F + + + F + G++ + +I D+ + +S+G G+I + ++
Sbjct: 161 ADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVM 220
Query: 117 STQAALRAPSKLIDGR------------LAACNLACEGLSGPSSALDVSQRKLYIGSLSP 164
S A+ +L G+ LA N G +GP+ RKLY+G+L
Sbjct: 221 SVPMAIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPAD------RKLYVGNLHF 274
Query: 165 EVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKA--IDDPEKTLGG 222
++ L F G +E + D +T +GFGF+ + E +K A + + + G
Sbjct: 275 NMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAG 334
Query: 223 RTIIVKFAGAHKGKTGQPP 241
RTI V H G P
Sbjct: 335 RTIKVSSVSDHIGTQDSAP 353
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 14/158 (8%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR 123
R L++ L + L + F + GE+ VI +K TG+ GYGFI + + + + L+
Sbjct: 24 RTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQ 83
Query: 124 A------PSKLIDGRLAACNLACEGLSGPSSALDVS-QRKLYIGSLSPEVTSEVLLSFFG 176
P + RL + G +D +++G L+P+VT +L F
Sbjct: 84 TYNGTQMPGTELTFRLNWASF------GSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFR 137
Query: 177 RH-GEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAI 213
H + V D T S+G+GFV + +A+
Sbjct: 138 VHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAM 175
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 14/158 (8%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR 123
R L++ L + L + F + GE+ VI +K TG+ GYGFI + + + + L+
Sbjct: 24 RTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQ 83
Query: 124 A------PSKLIDGRLAACNLACEGLSGPSSALDVS-QRKLYIGSLSPEVTSEVLLSFFG 176
P + RL + G +D +++G L+P+VT +L F
Sbjct: 84 TYNGTQMPGTELTFRLNWASF------GSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFR 137
Query: 177 RH-GEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAI 213
H + V D T S+G+GFV + +A+
Sbjct: 138 VHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAM 175
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 41/61 (67%)
Query: 62 VHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAA 121
V + FV GLAW T+ E L F + G++ + +I D+ +G+SRG+GF+T+K+ ++ + A
Sbjct: 4 VEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
Query: 122 L 122
+
Sbjct: 64 I 64
>AT3G54770.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:20273863-20275731 REVERSE LENGTH=218
Length = 218
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 84 FQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAPSKLIDGRLAACNLACEG 142
F ++G+I E +I DK T +S+GYGF+T+K+ ++ A + +I+GR A CNLA G
Sbjct: 5 FIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRANCNLASLG 63
>AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376710-1379275 REVERSE
LENGTH=439
Length = 439
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 113/274 (41%), Gaps = 54/274 (19%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLFV + + S L FQE ++E +I DK T SRG F+ + E
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEA------ 72
Query: 125 PSKLIDGRLAACNLACEGLSGPSSALDVS---------QRKLYIGSLSPEVTSEVLLSFF 175
KL++ AC+ + L G +S L V + KL++G L V+ + S F
Sbjct: 73 -DKLVN----ACHNK-KTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLF 126
Query: 176 GRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID--DPEKTLGGRTI--IVKFAG 231
++G I++ + S+G F+ Y+T E A A++ + + + G T+ +VK+A
Sbjct: 127 SKYGTIKDLQILRGAQ-QTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWAD 185
Query: 232 AHKGKTGQPPFPAGVPMAALPMTPGYVQSGKPHISSAPSVGYTYPQPVAPYPLASYPIPP 291
+ + + +Q + HI+ + T P P+ +PP
Sbjct: 186 TERERHTR-----------------RLQKAQSHIARLGNGDPTNPSLFGALPMGY--VPP 226
Query: 292 LTA----PPSAY-----PAQGQVPYAPVSAKKDQ 316
PP Y P Q Q ++ + A+ +Q
Sbjct: 227 YNGYGYHPPGTYGYMLPPIQNQAAFSNMIAQPNQ 260
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 48 SIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGY 107
S +++K++ D +H W L F E+ VI +K T +S GY
Sbjct: 113 SGGDDVKTLWVGDLLH---------W-MDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGY 162
Query: 108 GFITYKNMESTQAALRA------PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGS 161
GF+ + + + + AL++ P+ RL + + + D+S +++G
Sbjct: 163 GFVEFLSRSAAEEALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLS---IFVGD 219
Query: 162 LSPEVTSEVLL-SFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAI 213
L+P+V+ VLL +F GR+ ++ V D +T S+G+GFV + +A+
Sbjct: 220 LAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAM 272
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 76/184 (41%), Gaps = 29/184 (15%)
Query: 66 LFVRGLAWNTSSETLCAAFQ-EHGEIEEGAVIYDKATGKSRGYGFITYKN-MESTQAALR 123
+FV LA + S L F + ++ V+ D TG+S+GYGF+ + + E ++A
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTE 274
Query: 124 APSKLIDGRLAACNLAC---------------------EGLSGPSSALDVSQRKLYIGSL 162
R +A G +G S + + +++G L
Sbjct: 275 MNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGL 334
Query: 163 SPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGG 222
+VT E L+ F GE+ + V +G GFV + ++A++AI + T+ G
Sbjct: 335 DADVTEEDLMQPFSDFGEVVSVKIP------VGKGCGFVQFANRQSAEEAIGNLNGTVIG 388
Query: 223 RTII 226
+ +
Sbjct: 389 KNTV 392
>AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like 2
| chr3:6404270-6407822 REVERSE LENGTH=636
Length = 636
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 66 LFVRGLAWNTSSETLCAAFQEHGEIEEGAVI-YDKATGKSRGYGFITYKNMESTQAALRA 124
LF L++ + + F+E GE+ + + +D G +GYG I + + E Q AL
Sbjct: 386 LFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFD--DGSFKGYGHIEFASPEEAQKALEM 443
Query: 125 PSKLIDGRLAACNLACEG----LSGPSSALDVSQ-RKLYI----GSLSPEVTSEVLLSFF 175
KL+ GR +LA E S P + SQ R +Y+ SL + + L S F
Sbjct: 444 NGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSHF 503
Query: 176 GRHGEIEEGSVAYDKDTNVSRGFGFV 201
+ GE+ V D++T SRGF ++
Sbjct: 504 SKCGEVTRVHVPTDRETGASRGFAYI 529
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITY 112
KLF+ GL+W+ ++L AF GE+ E + YDK +G+SRG+GF+ +
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYK---TTEAAKKA 212
KL+IG LS V + L F GE+ E +AYDK + SRGFGFV + +AK A
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 213 IDDPEKTLGGRTIIVKFA 230
+D K L GR + + FA
Sbjct: 102 MDG--KGLLGRPLRISFA 117
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
++++G LSPEVT L F R G+I + + ++DT SRGFGF+T+ A ++A+D+
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITF----ADRRAMDE 63
Query: 216 PEKTLGGRTI 225
+ + GR
Sbjct: 64 SIREMHGRDF 73
>AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:11695350-11696563 REVERSE LENGTH=116
Length = 116
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 66 LFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAA-LRA 124
LFV+G++++++ ETL AF ++G++ + VI DK + +G+ ++T+ + E + A L
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 125 PSKLIDGRLAACN 137
++L+DGR+ +
Sbjct: 83 NAQLVDGRVVILD 95
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 23/169 (13%)
Query: 51 EEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFI 110
E+ + S P ++F+ GL + E L +E GEI E ++ D+ +G S+GY F+
Sbjct: 83 EKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFV 142
Query: 111 TYKNMESTQAALRA-PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSE 169
+K + Q A+ SK G+ C+L+ ++ +L+IG++ T +
Sbjct: 143 AFKTKDVAQKAIEELHSKEFKGKTIRCSLS------------ETKNRLFIGNIPKNWTED 190
Query: 170 VLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAA----KKAID 214
IE+ +T +RGF FV Y A +K ID
Sbjct: 191 EFRKV------IEDVGPGDPTNTTRNRGFAFVLYYNNACADYSRQKMID 233
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 92/226 (40%), Gaps = 38/226 (16%)
Query: 21 EDLRLLIEPLAKPQLVDLLAKLGSQ----YPSIAEEIKSIA--SADPVHRKLFVRGLAWN 74
EDLR L E + + V L+ S Y +A + K +A + + +H K F
Sbjct: 110 EDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRC 169
Query: 75 TSSETLCAAF-----QEHGEIEEGAVIYDKATG------KSRGYGFITYKNMESTQAALR 123
+ SET F + E E VI D G ++RG+ F+ Y N A
Sbjct: 170 SLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGDPTNTTRNRGFAFVLYYN---NACADY 226
Query: 124 APSKLIDGRLAACNLACEG----------LSGPSSALDVSQRK-LYIGSLSPEVTSEVLL 172
+ K+ID N EG S P + +Q K LY+ ++ ++E L
Sbjct: 227 SRQKMID-----SNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLK 281
Query: 173 SFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEK 218
F RHGE+ + + R FGFV Y +A KA+ D E+
Sbjct: 282 ELFQRHGEVTK--IVTPPGKGGKRDFGFVHYAERSSALKAVKDTER 325
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 91/199 (45%), Gaps = 30/199 (15%)
Query: 61 PVHRKLFVRGLAWNTSSETLCAAFQE-HGEIEEGAVIYDKATGKSRGYGFITYKNMESTQ 119
P H +FV LA + + L F+ + ++ V+ D+ TG+S+GYGF+ + + ES Q
Sbjct: 171 PEH-TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFAD-ESEQ 228
Query: 120 AALRAPSKLIDGRLAACN-----------------LACEGLSGPSSALDVSQRKLYIGSL 162
+RA +++ +G+ + + + G S D + +++G++
Sbjct: 229 --IRAMTEM-NGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAV 285
Query: 163 SPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKT-LG 221
VT + L S FG+ GE+ + K GFV Y A++A+ T LG
Sbjct: 286 DQSVTEDDLKSVFGQFGELVHVKIPAGKRC------GFVQYANRACAEQALSVLNGTQLG 339
Query: 222 GRTIIVKFAGAHKGKTGQP 240
G++I + + + K QP
Sbjct: 340 GQSIRLSWGRSPSNKQTQP 358
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 11/159 (6%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR 123
R L++ L L F GE VI +K G S GYGFI + N + + L+
Sbjct: 80 RSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQ 139
Query: 124 A------PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLL-SFFG 176
PS RL L +G + + +++G L+P+VT +L +F
Sbjct: 140 TYNGAPMPSSEQAFRLNWAQLG----AGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKA 195
Query: 177 RHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
+ ++ V D+ T S+G+GFV + +A+ +
Sbjct: 196 VYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
++++G LS +VT L S F R+G+I E + +DT RGFGF+T+ A AI
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI-- 70
Query: 216 PEKTLGGRTIIVKFAGAHKGKTGQPPFPAGVPMAALPMTPGYVQSGK 262
K + GR + K +K + P G + L GY GK
Sbjct: 71 --KHMHGRELGNKVISVNKAE----PKVGGEDVDQLKKGGGYSSRGK 111
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
++++G LS +VT L S F R+G+I E + +DT RGFGF+T+ A AI
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI-- 70
Query: 216 PEKTLGGRTIIVKFAGAHKGKTGQPPFPAGVPMAALPMTPGYVQSGK 262
K + GR + K +K + P G + L GY GK
Sbjct: 71 --KHMHGRELGNKVISVNKAE----PKVGGEDVDQLKKGGGYSSRGK 111
>AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22171332-22172656 FORWARD LENGTH=156
Length = 156
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
LFV GL+ T+SE L AF + GE+ + V+ D+ +G S+G+GF+ Y +E + +
Sbjct: 57 NLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAG 116
Query: 125 -PSKLIDG 131
K +DG
Sbjct: 117 MDGKFLDG 124
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
L++ LS TSE L + F + GE+ + V D+ + S+GFGFV Y T E + K I
Sbjct: 57 NLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAG 116
Query: 216 PE-KTLGGRTIIVKFA 230
+ K L G I ++A
Sbjct: 117 MDGKFLDGWVIFAEYA 132
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 23/180 (12%)
Query: 61 PVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQA 120
P ++V+ L + L F + G I V+ D+ +G SR +GF+ N E T+A
Sbjct: 226 PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFV---NFECTEA 281
Query: 121 ALRAPSKLIDGRLAACNLACEGLSGPSSALDVSQRK-----------------LYIGSLS 163
A A K+ +G ++ G + S + R+ LY+ +L
Sbjct: 282 AASAVEKM-NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLD 340
Query: 164 PEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGR 223
V E L F +G + V + +SRGFGFV Y E A +A+ + + GR
Sbjct: 341 DSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGR 399
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQ-AALR 123
+LFV GL+ T++E L AF G++ + VI D+ +G+S+G+GF+TY +E + A
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 124 APSKLIDG 131
+K +DG
Sbjct: 95 MNAKFLDG 102
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 136 CNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVS 195
C C L+ P +L++ LS T+E L F G++ + V D+D+ S
Sbjct: 24 CVRRCSTLTSP---------RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRS 74
Query: 196 RGFGFVTYKTTEAAKKAIDDPE-KTLGGRTIIV 227
+GFGFVTY T E A+KA + K L G I V
Sbjct: 75 KGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFV 107
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 19/171 (11%)
Query: 51 EEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFI 110
E+ + S P ++F+ GL + E L +E GEI E ++ D+ +G S+GY F+
Sbjct: 103 EKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFV 162
Query: 111 TYKNMESTQAALRA-PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSE 169
+K + Q A+ SK G+ C+L+ ++ +L+IG++ T +
Sbjct: 163 AFKTKDVAQKAIEELHSKEFKGKTIRCSLS------------ETKNRLFIGNIPKNWTED 210
Query: 170 VLLSFFGRHG-EIEEGSVAYD-KDTNVSRGFGFVTYKTTEAA----KKAID 214
G +E + D +T +RGF FV Y A +K ID
Sbjct: 211 EFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMID 261
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 92/234 (39%), Gaps = 46/234 (19%)
Query: 21 EDLRLLIEPLAKPQLVDLLAKLGSQ----YPSIAEEIKSIA------------------- 57
EDLR L E + + V L+ S Y +A + K +A
Sbjct: 130 EDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRC 189
Query: 58 SADPVHRKLFVRGLAWNTSSETLCAAFQEHG-EIEEGAVIYD-KATGKSRGYGFITYKNM 115
S +LF+ + N + + ++ G +E +I D T ++RG+ F+ Y N
Sbjct: 190 SLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYN- 248
Query: 116 ESTQAALRAPSKLIDGRLAACNLACEG----------LSGPSSALDVSQRK-LYIGSLSP 164
A + K+ID N EG S P + +Q K LY+ ++
Sbjct: 249 --NACADYSRQKMID-----SNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPE 301
Query: 165 EVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEK 218
++E L F RHGE+ + + R FGFV Y +A KA+ D E+
Sbjct: 302 NTSTEQLKELFQRHGEVTK--IVTPPGKGGKRDFGFVHYAERSSALKAVKDTER 353
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 19/171 (11%)
Query: 51 EEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFI 110
E+ + S P ++F+ GL + E L +E GEI E ++ D+ +G S+GY F+
Sbjct: 103 EKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFV 162
Query: 111 TYKNMESTQAALRA-PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSE 169
+K + Q A+ SK G+ C+L+ ++ +L+IG++ T +
Sbjct: 163 AFKTKDVAQKAIEELHSKEFKGKTIRCSLS------------ETKNRLFIGNIPKNWTED 210
Query: 170 VLLSFFGRHG-EIEEGSVAYD-KDTNVSRGFGFVTYKTTEAA----KKAID 214
G +E + D +T +RGF FV Y A +K ID
Sbjct: 211 EFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMID 261
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 92/234 (39%), Gaps = 46/234 (19%)
Query: 21 EDLRLLIEPLAKPQLVDLLAKLGSQ----YPSIAEEIKSIA------------------- 57
EDLR L E + + V L+ S Y +A + K +A
Sbjct: 130 EDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRC 189
Query: 58 SADPVHRKLFVRGLAWNTSSETLCAAFQEHG-EIEEGAVIYD-KATGKSRGYGFITYKNM 115
S +LF+ + N + + ++ G +E +I D T ++RG+ F+ Y N
Sbjct: 190 SLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYN- 248
Query: 116 ESTQAALRAPSKLIDGRLAACNLACEG----------LSGPSSALDVSQRK-LYIGSLSP 164
A + K+ID N EG S P + +Q K LY+ ++
Sbjct: 249 --NACADYSRQKMID-----SNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPE 301
Query: 165 EVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEK 218
++E L F RHGE+ + + R FGFV Y +A KA+ D E+
Sbjct: 302 NTSTEQLKELFQRHGEVTK--IVTPPGKGGKRDFGFVHYAERSSALKAVKDTER 353
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 15/185 (8%)
Query: 39 LAKLGSQYPSIAEEIKSI--ASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVI 96
L + GS ++ K+I S D V + L+V L L + F GE+ VI
Sbjct: 82 LHQYGSYQQHQHQQHKAIDRGSGDDV-KTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVI 140
Query: 97 YDKATGKSRGYGFITYKNMESTQAALR------APSKLIDGRLAACNLACEGLSGPSSAL 150
+K T +S GYGF+ + + + + L+ P+ R+ + + +
Sbjct: 141 RNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGP 200
Query: 151 DVSQRKLYIGSLSPEVTSEVLL--SFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEA 208
D+S +++G LSP+VT +VLL +F R+ ++ V D +T S+G+GFV +
Sbjct: 201 DLS---VFVGDLSPDVT-DVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENE 256
Query: 209 AKKAI 213
+A+
Sbjct: 257 RSRAL 261
>AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like 1 |
chr1:18098186-18101422 FORWARD LENGTH=557
Length = 557
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 19/176 (10%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR 123
+ LF L++N + F+E GE+ + ++ G RG+G + + + E Q AL
Sbjct: 297 KTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE 356
Query: 124 APSKLIDGRLAACNLACE-GLSGPSSALD------------VSQRKLYI----GSLSPEV 166
+ + GR ++A E G G A ++K+++ SLS +
Sbjct: 357 FHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDASLSEDD 416
Query: 167 TSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGG 222
L F GEI+ SV D+DT S+G ++ + +E +KA++ +GG
Sbjct: 417 IKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF--SEGKEKALELNGSDMGG 470
>AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9270114-9270597 REVERSE LENGTH=117
Length = 117
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 59 ADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMEST 118
A V FVRGL +T + L F + G + + +IYD+ TGKSR +GF+T++ +S
Sbjct: 2 ATNVEYTCFVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSM 61
Query: 119 QAAL 122
A+
Sbjct: 62 TDAI 65
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 146 PSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKT 205
PS D + LYIG L P + + L++ F GEI V D+ T +S+G+GFV Y
Sbjct: 473 PSKEYD--ETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530
Query: 206 TEAAKKAIDDPEK-TLGGRTIIVKFAG 231
+ A A+ GRT+ V+ AG
Sbjct: 531 VQMANTAVQAMNGYRFEGRTLAVRIAG 557
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 146 PSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKT 205
PS D + LYIG L P + + L++ F GEI V D+ T +S+G+GFV Y
Sbjct: 473 PSKEYD--ETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530
Query: 206 TEAAKKAIDDPEK-TLGGRTIIVKFAG 231
+ A A+ GRT+ V+ AG
Sbjct: 531 VQMANTAVQAMNGYRFEGRTLAVRIAG 557
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 146 PSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKT 205
PS D + LYIG L P + + L++ F GEI V D+ T +S+G+GFV Y
Sbjct: 473 PSKEYD--ETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530
Query: 206 TEAAKKAIDDPEK-TLGGRTIIVKFAG 231
+ A A+ GRT+ V+ AG
Sbjct: 531 VQMANTAVQAMNGYRFEGRTLAVRIAG 557
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 17/190 (8%)
Query: 56 IASADPVHR----KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFIT 111
++ A+PV + +L+V + + L FQ G + V + TG+SRG G++T
Sbjct: 96 VSKAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVT 155
Query: 112 YKNMESTQAALRA-PSKLIDGRLAACNLACEGLSGPSSALDV------------SQRKLY 158
++ S + A+ + + GR + + G +V SQ K+Y
Sbjct: 156 MGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVY 215
Query: 159 IGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEK 218
+G+L + L + F + G I V +D+ T +R F F+++ + E A+
Sbjct: 216 VGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGT 275
Query: 219 TLGGRTIIVK 228
GR IIV+
Sbjct: 276 QYEGRRIIVR 285
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 59 ADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMEST 118
A + +LFV L+ T+ ++L F G+I+E +I D T + +G+GFIT+ + +
Sbjct: 2 AKRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDA 61
Query: 119 QAALRA-PSKLIDGRLAACNLA 139
+ AL++ K++DGRL +A
Sbjct: 62 RKALKSLDGKIVDGRLIFVEVA 83
Score = 49.3 bits (116), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
+L++ LS T + L F G+I+E + D +T +GFGF+T+ + + A+KA+
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
Query: 216 PE-KTLGGRTIIVKFA 230
+ K + GR I V+ A
Sbjct: 68 LDGKIVDGRLIFVEVA 83
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 80/165 (48%), Gaps = 8/165 (4%)
Query: 66 LFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAP 125
+FV+ L + ++ L F++ G I V GKSRGYGF+ ++ ++ AA++
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 126 SKLIDGRLAACNLACEGLSGPSSALDVSQR--KLYIGSLSPEVTSEVLLSFFGRHGEIEE 183
+ I +A + + + ++ LY+ +L +V+ ++L F G+I
Sbjct: 173 NSTI---VADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVS 229
Query: 184 GSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKT-LGGRTIIV 227
++A D++ + RG+ FV + E A++A + T G + + V
Sbjct: 230 LAIAKDEN-RLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYV 273
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 6/161 (3%)
Query: 61 PVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQA 120
PV L+V L + + L AF E + + D ++G+S YG+ + + +
Sbjct: 21 PVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANL 80
Query: 121 AL-RAPSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHG 179
A+ + + L++G++ + + + +++ +L VT+ VL F + G
Sbjct: 81 AIEKKNNSLLNGKMIRVMWSVRAPDARRNGVG----NVFVKNLPESVTNAVLQDMFKKFG 136
Query: 180 EIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTL 220
I VA +D SRG+GFV ++ +AA AI T+
Sbjct: 137 NIVSCKVATLEDGK-SRGYGFVQFEQEDAAHAAIQTLNSTI 176
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 22/187 (11%)
Query: 59 ADPV--HRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNME 116
ADP R +F +A + + F G++ + +I D+ + +SRG G++ + +
Sbjct: 224 ADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTM 283
Query: 117 STQAALRAPSKLIDGR-------LAACNLA--------CEGLSGPSSALDVSQRKLYIGS 161
S A+ + + G+ A NL G+ GP S R+LY+G+
Sbjct: 284 SVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSG---GARRLYVGN 340
Query: 162 LSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID-DPEKTL 220
L ++ + L F G +E V D +T + +GFGFV + E A+ A++ + + +
Sbjct: 341 LHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALNLNGQLEI 399
Query: 221 GGRTIIV 227
GR I V
Sbjct: 400 AGRAIKV 406
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 22/187 (11%)
Query: 59 ADPV--HRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNME 116
ADP R +F +A + + F G++ + +I D+ + +SRG G++ + +
Sbjct: 175 ADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTM 234
Query: 117 STQAALRAPSKLIDGR-------LAACNLA--------CEGLSGPSSALDVSQRKLYIGS 161
S A+ + + G+ A NL G+ GP S R+LY+G+
Sbjct: 235 SVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSG---GARRLYVGN 291
Query: 162 LSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID-DPEKTL 220
L ++ + L F G +E V D +T + +GFGFV + E A+ A++ + + +
Sbjct: 292 LHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALNLNGQLEI 350
Query: 221 GGRTIIV 227
GR I V
Sbjct: 351 AGRAIKV 357
>AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:2829341-2834189 FORWARD LENGTH=690
Length = 690
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 144 SGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTY 203
G LD +L++ L T E L+ F + G+I E + DKDT RG FV Y
Sbjct: 218 DGSDDVLDAG--RLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLY 275
Query: 204 KTTEAAKKAIDDPEKT-LGGRTIIV 227
E+AK A+D +K GRT+ +
Sbjct: 276 LIPESAKMAMDKLDKLPFQGRTLHI 300
>AT2G43370.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18013431-18015376 FORWARD LENGTH=333
Length = 333
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 68/168 (40%), Gaps = 12/168 (7%)
Query: 144 SGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTY 203
SG S A+ L++G LS T + L ++G I+ + T SRG+GFV Y
Sbjct: 53 SGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEY 112
Query: 204 KTTEAAKKAIDDPEKTL-GGRTIIVKFAGAHKGKTGQPPFPAGVPMAALPMTPGYVQSGK 262
+T + +A +D +L GR IIV + Q P +P G +SG+
Sbjct: 113 ETEKEMLRAYEDAHHSLIDGREIIVDY-------NRQQLMPGWIPRRLGGGLGGRKESGQ 165
Query: 263 PHISSAPSVGYTYPQPVAPYPLASYPIPPLTAPPSA-YPAQGQVPYAP 309
+ P+ P P + PP Y ++ Q+P P
Sbjct: 166 LRFGGRDR---PFRAPLRPIPHEDLKKLGIQLPPEGRYMSRTQIPSPP 210
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 17/170 (10%)
Query: 51 EEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFI 110
E+ + S P ++F+ GL + E L +E GEI E ++ D+ +G S+GY F+
Sbjct: 103 EKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFV 162
Query: 111 TYKNMESTQAALRAPSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEV 170
+K + Q A+ +L A + A + +L +S R L+IG++ T +
Sbjct: 163 AFKTKDVAQKAI---EELHSKEFKASSTA-------NCSLSLSNR-LFIGNIPKNWTEDE 211
Query: 171 LLSFFGRHG-EIEEGSVAYD-KDTNVSRGFGFVTYKTTEAA----KKAID 214
G +E + D +T +RGF FV Y A +K ID
Sbjct: 212 FRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMID 261
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 95/234 (40%), Gaps = 46/234 (19%)
Query: 21 EDLRLLIEPLAKPQLVDLLAKLGSQ----YPSIAEEIKSIA--SADPVHRK--------- 65
EDLR L E + + V L+ S Y +A + K +A + + +H K
Sbjct: 130 EDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKASSTAN 189
Query: 66 --------LFVRGLAWNTSSETLCAAFQEHG-EIEEGAVIYD-KATGKSRGYGFITYKNM 115
LF+ + N + + ++ G +E +I D T ++RG+ F+ Y N
Sbjct: 190 CSLSLSNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYN- 248
Query: 116 ESTQAALRAPSKLIDGRLAACNLACEG----------LSGPSSALDVSQRK-LYIGSLSP 164
A + K+ID N EG S P + +Q K LY+ ++
Sbjct: 249 --NACADYSRQKMID-----SNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPE 301
Query: 165 EVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEK 218
++E L F RHGE+ + + R FGFV Y +A KA+ D E+
Sbjct: 302 NTSTEQLKELFQRHGEVTK--IVTPPGKGGKRDFGFVHYAERSSALKAVKDTER 353
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 18/191 (9%)
Query: 56 IASADPVHR----KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVI-YDKATGKSRGYGFI 110
++ A+PV + +L+V + + L FQ G + V+ + TG+SRG G++
Sbjct: 96 VSKAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYV 155
Query: 111 TYKNMESTQAALRA-PSKLIDGRLAACNLACEGLSGPSSALDV------------SQRKL 157
T ++ S + A+ + + GR + + G +V SQ K+
Sbjct: 156 TMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKV 215
Query: 158 YIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPE 217
Y+G+L + L + F + G I V +D+ T +R F F+++ + E A+
Sbjct: 216 YVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNG 275
Query: 218 KTLGGRTIIVK 228
GR IIV+
Sbjct: 276 TQYEGRRIIVR 286
>AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 142 GLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFV 201
G SGP D L + +++ T++ L F ++G++ + + D+ T SRGF FV
Sbjct: 5 GRSGPPDISDTYS--LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFV 62
Query: 202 TYKTTEAAKKAIDDPE-KTLGGRTIIVKFA 230
YK + A KA++ + + + GR I V+FA
Sbjct: 63 RYKYKDEAHKAVERLDGRVVDGREITVQFA 92
>AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 142 GLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFV 201
G SGP D L + +++ T++ L F ++G++ + + D+ T SRGF FV
Sbjct: 5 GRSGPPDISDTYS--LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFV 62
Query: 202 TYKTTEAAKKAIDDPE-KTLGGRTIIVKFA 230
YK + A KA++ + + + GR I V+FA
Sbjct: 63 RYKYKDEAHKAVERLDGRVVDGREITVQFA 92
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 22/177 (12%)
Query: 66 LFVRGLAWNTSSETLCAAFQE-HGEIEEGAVIYDKATGKSRGYGFITYKN-MESTQAALR 123
+FV L+ + S L F E + ++ V+ D TG+S+GYGF+ + + E T+A
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 124 APSKLIDGRLAACNLAC---------EGLSGPSSAL-----DVSQRKLYIGSLSPEVTSE 169
R A +G P+ L D+ +++G L VT E
Sbjct: 259 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDE 318
Query: 170 VLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTII 226
L F GEI + V +G GFV + A++A++ T+ G+ +
Sbjct: 319 DLKQPFNEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTV 369