Miyakogusa Predicted Gene

Lj1g3v4317460.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4317460.1 tr|B9ICJ5|B9ICJ5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_575564 PE=4
SV=1,37.5,2e-16,Mitochondrial termination factor repeats,Mitochodrial
transcription termination factor-related; seg,,CUFF.32245.1
         (579 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G06810.1 | Symbols:  | Mitochondrial transcription terminatio...   442   e-124
AT4G19650.1 | Symbols:  | Mitochondrial transcription terminatio...   349   2e-96
AT5G45113.1 | Symbols:  | mitochondrial transcription terminatio...   221   9e-58
AT3G60400.1 | Symbols:  | Mitochondrial transcription terminatio...   162   5e-40
AT1G62150.1 | Symbols:  | Mitochondrial transcription terminatio...    53   7e-07

>AT5G06810.1 | Symbols:  | Mitochondrial transcription termination
            factor family protein | chr5:2108493-2112256 FORWARD
            LENGTH=1141
          Length = 1141

 Score =  442 bits (1136), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 235/569 (41%), Positives = 356/569 (62%), Gaps = 24/569 (4%)

Query: 16   FTQNHLIHKPPQNPRFHSTKKPIQSKVKPFPK-------SIVKEAQAALLEYLHSTRSLQ 68
            F +  L  +  +NPRF +T++ +        K        I K AQ A+ +Y + TR LQ
Sbjct: 582  FAETPLKPQLSRNPRFFATQRALVDAEVSGEKWGLRTRNEIRKVAQVAMFDYFYQTRGLQ 641

Query: 69   FSDADNMCKNSPFFLQDLLKKTQIHNKHKXXXXXXXXXXXXXXKHSISRYLRYHPINEFE 128
            F  A++M KN+P F  +LLKK                        +I+R+L +HP+NEFE
Sbjct: 642  FLVAESMSKNAPVFNDNLLKKLN--------GCDVDVDDDDDIVKAITRFLWFHPVNEFE 693

Query: 129  PFFESVGLKPSEYASLLPRDMMFLNDDALLMENYQTLCNFGVQRTKVGRIFKRAPEVFRY 188
            PF ES+GLKPSE++ L+P D MFLN+DA L+ENY    N+G+ R K+G+IFK A EVF Y
Sbjct: 694  PFLESLGLKPSEFSHLIPCDKMFLNEDAFLLENYHVFWNYGIGREKMGKIFKEAREVFGY 753

Query: 189  ESGVLSLKLKAYEELGVAASTLVDAVAASPSLLVGDVDLDFVKVVEKLKEHFVAKGGGWV 248
            E+GVL+ K+K+YE+LG +   L   +  SPS+L+GD+++   KV+E LK   +  G  WV
Sbjct: 754  ETGVLASKIKSYEDLGFSKLFLSKLIVCSPSILIGDMNVGLAKVMEMLKA--IGFGVDWV 811

Query: 249  EEHFLDGGVYCNWGMVLRLLCLLSEVGFSEGQIDELIRDRPCVVFQESGGRALSLIAFLS 308
             E+  +   Y +W  + R L  L ++   E ++ ELIR  P ++F++SG   L L  F +
Sbjct: 812  TENLSEEVSY-DWSSMHRCLSFLRDLYVDENELCELIRKMPRLIFEDSGEWTLILAGFEA 870

Query: 309  KFGLAVDRIALMFLEFPQIR-IDKFYTNLRRCLQFLTEIEMQGEEIGSIFQSHTLLLGSF 367
            K G +   ++ +F +FPQ + + KF  NLR C  FL +IEM  +EIG IF+ H+L +G  
Sbjct: 871  KLGSSRSELSSLFQKFPQCQSLGKFVLNLRHCFLFLKDIEMDDDEIGKIFRLHSLWIGVS 930

Query: 368  TMKKTKSLLVDMNVGRKRLCRMVQDNPQEMKNWAMGIRVQPM--VSVKAEQQTMLRKTEF 425
             +K+T +LL+++  G+ RLC+++Q+NP+EMK W MG+RVQP+     K   ++   KT+F
Sbjct: 931  RLKQTSTLLINLKGGKGRLCQVIQENPEEMKKWIMGLRVQPLPATGYKVNTKSKTMKTQF 990

Query: 426  LVRWGFVENENSENLKEAFKLFRGRGTELQERFDLIVNAGVDSEDVRKMLRVSPQIINQS 485
            L+  G+   ENSE ++ A K FRG+G+EL+ERF+++V+ G+  +DV+ M++  P I+ Q+
Sbjct: 991  LLDLGY--KENSEEMERALKNFRGKGSELRERFNVLVSFGLTEKDVKDMVKACPSILTQA 1048

Query: 486  IDRIKMKMEYLVKE-GYSISDLVTFPSFLSYTPSRVKLRLSMNNWLKDQGVADAGLALST 544
             D ++ K+ YLVKE GY +S LVTFP+ L YT  R+KLR SM +WL+D+G AD  L +ST
Sbjct: 1049 CDILESKVNYLVKELGYPLSTLVTFPTCLKYTLQRMKLRFSMFSWLQDRGKADPKLQVST 1108

Query: 545  TIACTERIFIQQYVKRHPSGLQVWQKLKK 573
             + C+++ F  ++V RHP G +  + LKK
Sbjct: 1109 ILVCSDKFFATRFVNRHPDGPKHLEDLKK 1137



 Score =  419 bits (1078), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/560 (39%), Positives = 351/560 (62%), Gaps = 29/560 (5%)

Query: 4   LRKLRSTFPFANFTQNHLIHKPPQNPRFHSTKKPIQSKVKPFPKSIVKEAQAALLEYLHS 63
           LR  ++   FA  T N +  +  +  R  +       K+ P   ++ K A+ A+L+Y +S
Sbjct: 37  LRCAQTPRSFATVTGNEVCSEKSKVKRTRNG-----FKITP---NVRKLAEEAMLDYFYS 88

Query: 64  TRSLQFSDADNMCKNSPFFLQDLLKKTQIHNKHKXXXXXXXXXXXXXXKHSISRYLRYHP 123
           TR LQ+  A++M KNSP F+ +LLKK                        SI+RYLR+HP
Sbjct: 89  TRGLQYMVAESMSKNSPIFIDNLLKKVDC-------------VTASDINQSITRYLRFHP 135

Query: 124 INEFEPFFESVGLKPSEYASLLPRDMMFLNDDALLMENYQTLCNFGVQRTKVGRIFKRAP 183
           +NEFEPF ES GL PSEY  L+P D +FL+++  L+EN+  LC  GV   ++G+IFK A 
Sbjct: 136 VNEFEPFLESSGLNPSEYNHLVPCDKVFLDEEGFLLENHHVLCYSGVDPKRIGKIFKEAR 195

Query: 184 EVFRYESGVLSLKLKAYEELGVAASTLVDAVAASPSLLVGDVDLDFVKVVEKLKEHFVAK 243
           EVF YE+GVL+ K+KAYE+LG +   L   +  SP +L+G  +++ V+VV+ L+   +  
Sbjct: 196 EVFSYETGVLASKIKAYEDLGFSRLFLSKLIVCSPRVLMGHTNIELVQVVKTLQS--LGF 253

Query: 244 GGGWVEEHFLDGGVYCNWGMVLRLLCLLSEVGFSEGQIDELIRDRPCVVFQESGGRALSL 303
              WV E+  D G   +W  V R+L LL E+ F E ++  LIR+ P ++F+ SG     L
Sbjct: 254 EFEWVMENLSDEGP--DWSSVHRVLSLLREICFDEEKLYGLIRNCPSLLFENSGKWTGIL 311

Query: 304 IAFLSKFGLAVDRIALMFLEFPQIRIDKFYTNLRRCLQFLTEIEMQGEEIGSIFQSHTLL 363
           + F +K G +   +  +F +FP I+++K  +NLR+C  FL EIEM+ +EI  +F+SH+  
Sbjct: 312 VGFETKLGASRSELCSLFQKFPLIQVEKCVSNLRQCFLFLKEIEMEDDEIHKVFRSHSWW 371

Query: 364 LGSFTMKKTKSLLVDMNVGRKRLCRMVQDNPQEMKNWAMGIRVQPMVSVKAEQQTMLRKT 423
           LGS  +KKT SLLV +  G+ R+C+++Q+NP+EMK W MG ++QP+ +   + ++   KT
Sbjct: 372 LGSCKLKKTSSLLVFLKAGKTRVCQVIQENPEEMKKWTMGSKIQPLPATNVDIESKSMKT 431

Query: 424 EFLVRWGFVENENSENLKEAFKLFRGRGTELQERFDLIVNAGVDSEDVRKMLRVSPQIIN 483
           +FL+  G+   ENSE ++ A K FRG+G+EL+ERF+++V+ G   +DV+ M++  P +++
Sbjct: 432 QFLLDLGY--KENSEEMETAMKNFRGKGSELRERFNVLVSLGFTKKDVKDMVKACPTMLS 489

Query: 484 QSIDRIKMKMEYLVKE-GYSISDLVTFPSFLSYTPSRVKLRLSMNNWLKDQGVADAGLAL 542
           Q+ D ++ K+ YL+KE GY +S LV FPS L +T  R+KLR +M +WL+ +G  D  + +
Sbjct: 490 QTCDILESKVNYLIKELGYPLSTLVDFPSCLKFTLQRMKLRFAMFSWLQARGKVDRKIKV 549

Query: 543 STTIACTERIFIQQYVKRHP 562
           ST +AC+++IF+  ++ R+P
Sbjct: 550 STMLACSDKIFVMSFM-RNP 568


>AT4G19650.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr4:10691674-10695166 FORWARD
           LENGTH=575
          Length = 575

 Score =  349 bits (896), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 184/502 (36%), Positives = 297/502 (59%), Gaps = 20/502 (3%)

Query: 73  DNMCKNSPFFLQDLLKKTQIHNKHKXXXXXXXXXXXXXXKHSISRYLRYHPINEFEPFFE 132
           +++ KNSP F+  LL K   + K                   ++++LRY+PINEFEPFFE
Sbjct: 90  EHISKNSPCFMSTLLSKIDDNQKD--------------VSKGLTKFLRYNPINEFEPFFE 135

Query: 133 SVGLKPSEYASLLPRDMMFLNDDALLMENYQTLCNFGVQRTKVGRIFKRAPEVFRYESGV 192
           S+GL P E+ + LPR +MFL+DD ++ EN+  LCN+G+ R K+GR++K A E+FRYESG+
Sbjct: 136 SLGLCPYEFETFLPRKLMFLSDDGIMFENFHALCNYGIPRGKIGRMYKEAREIFRYESGM 195

Query: 193 LSLKLKAYEELGVAASTLVDAVAASPSLLVGDVDLDFVKVVEKLKEHFVAKGGGWVEEHF 252
           L++KL+ YE LG++ +T++  V + P LLVG +D +F  VV+KLK   V  G  W+  + 
Sbjct: 196 LAMKLRGYENLGLSKATVIKLVTSCPLLLVGGIDAEFSSVVDKLKGLQV--GCDWLGRYL 253

Query: 253 LDGGVYCNWGMVLRLLCLLSEVGFSEGQIDELIRDRPCVVFQESGGRALSLIAFLSKFGL 312
            D   Y +W  +L  +  L +VG  E ++  L++  P +V + SG +   L   L K GL
Sbjct: 254 SDRKTY-SWRRILETIEFLDKVGCKEEKLSSLLKTYPALVIEGSGKKFYVLFGRLFKAGL 312

Query: 313 AVDRIALMFLEFPQIRIDKFYTNLRRCLQFLTEIEMQGEEIGSIFQSHTLLLGSFTMKKT 372
            V+ I  +F++ P++  DK   N+++ L FL  I M+ + I  I  SH  L+GS ++   
Sbjct: 313 QVNEIYRLFIDNPEMLSDKCVKNIQKTLDFLIAIRMETQFITKILLSHMELIGSCSLPAP 372

Query: 373 KSLLVDMNVGRKRLCRMVQDNPQEMKNWAMGIRVQPMVSVKAEQQTMLRKTEFLVRWGFV 432
           ++  + +NV +  LC++++  P  +  +    + +    +  + +  L KTEFL+R G+V
Sbjct: 373 RTACLSLNVKQDELCKILKKEPLRLFCFVSTTKKRKSKPLSEDSRKYLEKTEFLLRLGYV 432

Query: 433 ENENSENLKEAFKLFRGRGTELQERFDLIVNAGVDSEDVRKMLRVSPQIINQSIDRIKMK 492
             ENS+ + +A K FRGRG +LQERFD +V AG++   V +++R +P I+N S D I+ K
Sbjct: 433 --ENSDEMVKALKQFRGRGDQLQERFDCLVKAGLNYNVVTEIIRHAPMILNLSKDVIEKK 490

Query: 493 MEYLVK-EGYSISDLVTFPSFLSYTPSRVKLRLSMNNWLKDQGVADAGLALSTTIACTER 551
           +  L +  GY I  LV FP++L Y   R+  R SM  WL+++  A   L+ ST + C + 
Sbjct: 491 IHSLTELLGYPIESLVRFPAYLCYDMQRIHHRFSMYLWLRERDAAKPMLSPSTILTCGDA 550

Query: 552 IFIQQYVKRHPSGLQVWQKLKK 573
            F++ +V  HP G  +W+ + +
Sbjct: 551 RFVKYFVNVHPEGPAIWESINQ 572


>AT5G45113.1 | Symbols:  | mitochondrial transcription termination
           factor-related / mTERF-related | chr5:18232277-18233521
           REVERSE LENGTH=414
          Length = 414

 Score =  221 bits (564), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 132/425 (31%), Positives = 229/425 (53%), Gaps = 23/425 (5%)

Query: 158 LMENYQTLCNFGVQRTKVGRIFKRAPEVFRYESGVLSLKLKAYEELGVAASTLVDAVAAS 217
           + EN+  LC +G+ R K+GR++K A E+F YE+GVL+ KL+ YE L +  + ++  V   
Sbjct: 1   MFENFHVLCYYGIPRDKIGRLYKEAREIFVYENGVLASKLEPYEILVLRKAIVIKLVTCC 60

Query: 218 PSLLVGDVDLDFVKVVEKLKEHFVAKGGGWVEEHFLDGGVYCNWGMVLRLLCLLSEVGFS 277
           P LLVG +D +FV VV KLK   +  G  W+  +      Y NW  +L  + LL +VGF 
Sbjct: 61  PLLLVGGIDCEFVSVVNKLKG--LNLGCDWLARYLSVRKTY-NWRRILETMELLEKVGFK 117

Query: 278 EGQIDELIRDRPCVVFQESGGRALSLIAFLSKFGLAVDRIALMFLEFPQIRIDKFYTNLR 337
           E ++  L++  P +V + SG +A  +     K GL ++ I  + ++  ++ ++K    + 
Sbjct: 118 EKKLSNLLKAYPDLVGETSGNKAYIMFEKFHKVGLQMNEIDKLLIDNSEMLLEKSVKRIL 177

Query: 338 RCLQFLTEIEMQGEEIGSIFQSHTLLLGSFTMKKTKSLLVDMNVGRKRLCRMVQDNPQEM 397
             L+FL  I ++ + +    Q H   + S ++   +++   + + R  LC+++++ P  +
Sbjct: 178 EALKFLKCIRIEKQFVVRFLQCHMKHICSSSLLVPRAVWNRLKIRRDELCQIIKEEPLRL 237

Query: 398 KNWAMG-----IRVQPMVSVKAEQQTMLRKTEFLVRWGFVENENSENLKEAFKLFRGRGT 452
            + A       I +  + S  AE      KT FL++ G+V  ENS+ +  A K F+GRG 
Sbjct: 238 FSIASKTNKGRIELDSLDSRNAE------KTTFLLKLGYV--ENSDEMVRALKKFQGRGD 289

Query: 453 ELQERFDLIVNAGVDSEDVRKMLRVSPQIINQSID----RIKMKMEYLVKEGYSISDLVT 508
           ELQERFD  V AG+D   V ++++ +P I+N+  D    +I M ++YLV   Y I  ++ 
Sbjct: 290 ELQERFDCFVKAGLDYNVVSQLVKRAPHILNRPKDIIEKKIIMLIDYLV---YPIESVIE 346

Query: 509 FPSFLSYTPSRVKLRLSMNNWLKDQGVADAGLALSTTIACTERIFIQQYVKRHPSGLQVW 568
            P++L Y+  R+  R +M  WL+++      L L T +  +  + +  +V  HP G   W
Sbjct: 347 SPTYLCYSMKRIHQRFTMYIWLRERDAVIPRLTLGTVVGISNTLIVPYFVNTHPEGPATW 406

Query: 569 QKLKK 573
           + +KK
Sbjct: 407 ENIKK 411


>AT3G60400.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr3:22329093-22330769 FORWARD
           LENGTH=558
          Length = 558

 Score =  162 bits (410), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 124/540 (22%), Positives = 250/540 (46%), Gaps = 50/540 (9%)

Query: 50  VKEAQAALLEYLHSTRSLQFSDADNMCKNSPFFLQDLLKKTQIHNKHKXXXXXXXXXXXX 109
           + +AQ A+ +YLH+TRSL ++ A+ +  N+   +++L+ K                    
Sbjct: 34  IGKAQQAITDYLHTTRSLSYTHAEQIASNASVSIRNLILKLDF--------------SVP 79

Query: 110 XXKHSISRYLRYHPINEFEPFFESVGLKPSEYASLLPRDMMFLNDDALLMENYQTLCNFG 169
               S+ ++L YHPINEFE FFES+G+  SE +  LP    F ++D  +++    L  FG
Sbjct: 80  TFSKSLRKHLSYHPINEFEFFFESIGIDYSEVSEFLPEKKFFFSEDRTVLDAAFALSGFG 139

Query: 170 VQRTKVGRIFKRAPEVFRYESGVLSLKLKAYEELGVAASTLVDAVAASPSLLVGDVDLD- 228
               K+G+++K    VF    G +  +L  ++++G +   ++    A P  L G  +L  
Sbjct: 140 FPWNKLGKLYKEERLVFVQRPGEIESRLLKFKDIGFSTVAVIGTCLAIPRTLCGGGELGS 199

Query: 229 -----FVKVVEKLKEHFVAKGGGWVEEHFLDGGVYCNWGMVLRLLCLLSEVGFSEGQIDE 283
                FVK +++L + F        + H L      +W  V R + +  ++G    ++ E
Sbjct: 200 EIRCLFVK-LKRLFDEF--------DSHHLFEENVDSWLAVSRKIRIFYDLGCENEEMWE 250

Query: 284 LIRDRPCVVFQESGGRALSLIAFLSKFGLAVDRIALMFLEFPQIRIDKFYTNLRRCLQFL 343
           L+     +  + S    ++   +  +FG++ +  AL+ L  P I        +      L
Sbjct: 251 LMCRNKSLFLEYSEEALMNKAGYFCRFGVSKEDAALLILRNPAIMNFDLEKPVISVTGML 310

Query: 344 TEIEMQGEEIGSIFQSHTLLLGSFTMKKTKSLLVDMNVGRKRLCRMVQDNPQEMKNWAMG 403
               ++ +E+ ++ Q +  + G   +K    +L  +++  +    +   N   + ++ + 
Sbjct: 311 KHFGLRQDEVDAVAQKYPYVFGRNQLKNLPYVLRAIDLHERIFDILKNGNHHLLASYTL- 369

Query: 404 IRVQPMVSVKAEQQTML-------------RKTEFLVRWGFVENENSENLKEAFKLFRGR 450
             + P   ++ E Q  L             +K +FL   GF EN  +    +  +   G 
Sbjct: 370 --MDPDEDLEREYQEGLEELQNSRTKRHNIQKLDFLHEIGFGENGIT---MKVLQHVHGT 424

Query: 451 GTELQERFDLIVNAGVDSEDVRKMLRVSPQIINQSIDRIKMKMEYLVKE-GYSISDLVTF 509
             EL +RF +++N+G+    +  ++R +P+I+NQ    I+ K+ +L  E G S+  L  F
Sbjct: 425 AVELHDRFQILLNSGIIFSKICMLIRSAPKILNQKPHSIQDKLRFLCGEMGDSLDYLEVF 484

Query: 510 PSFLSYT-PSRVKLRLSMNNWLKDQGVADAGLALSTTIACTERIFIQQYVKRHPSGLQVW 568
           P++L +   +R+  R   + WL ++G ++   ++++ +A +E+ FI +    HP+  + W
Sbjct: 485 PAYLCFDLENRISPRFRFHKWLVEKGFSEKSYSIASIVATSEKAFIARLYGIHPAIPKHW 544


>AT1G62150.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr1:22970198-22971589 REVERSE
           LENGTH=463
          Length = 463

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 3/153 (1%)

Query: 416 QQTMLRKTEFLVRWGFVENENSENLKEAFKLFRGRGTELQERFDLIVNAGVDSEDVRKML 475
           +  +++  E L R G  E+E     K+     R    ++    +  +  G   ++   M+
Sbjct: 297 ENRIIQTFEALKRCGLCEDEVLSVFKKNPLCLRASEQQILNSMETFIGLGFSRDEFVMMV 356

Query: 476 RVSPQIINQSIDRIKMKMEYLVKE-GYSISDLVTFPSFLSYT-PSRVKLRLSMNNWLKDQ 533
           +  PQ I  S + +K K E++VK+  + +  +  FP  L Y+   R   R ++   L  +
Sbjct: 357 KCLPQCIGYSAEMVKKKTEFVVKKMNWPLKVITLFPQVLGYSMEKRTVPRCNVIKALMSK 416

Query: 534 GVADAGLA-LSTTIACTERIFIQQYVKRHPSGL 565
           G+  + L  +++ +ACT++ F+++YV  H   L
Sbjct: 417 GLLGSELPPMASVLACTDQTFLKRYVVEHDEKL 449