Miyakogusa Predicted Gene
- Lj1g3v4316360.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4316360.2 Non Chatacterized Hit- tr|D7SQC4|D7SQC4_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,38.12,3e-18,seg,NULL,CUFF.32233.2
(258 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G57340.1 | Symbols: | unknown protein; Has 30201 Blast hits ... 70 2e-12
AT5G57340.2 | Symbols: | unknown protein; Has 35333 Blast hits ... 69 3e-12
AT5G67390.2 | Symbols: | unknown protein; BEST Arabidopsis thal... 52 4e-07
AT5G67390.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 52 4e-07
AT1G69360.1 | Symbols: | Plant protein of unknown function (DUF... 52 5e-07
AT1G13940.1 | Symbols: | Plant protein of unknown function (DUF... 50 1e-06
>AT5G57340.1 | Symbols: | unknown protein; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:23228076-23229094 FORWARD LENGTH=238
Length = 238
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 42/56 (75%), Gaps = 1/56 (1%)
Query: 55 MDKMLDRNNIESIKKTMQMHEEIFKHQVRELHRVYSVQKMLMGELKQH-KFWTSMN 109
MD+ L++ N ESI+ TMQ E+IFK QVRELHRVY+ QKM+M +LK ++WT N
Sbjct: 54 MDRFLEKQNAESIRHTMQAQEDIFKQQVRELHRVYNTQKMMMTQLKHRSQYWTVNN 109
>AT5G57340.2 | Symbols: | unknown protein; Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr5:23228022-23229094 FORWARD LENGTH=256
Length = 256
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 42/56 (75%), Gaps = 1/56 (1%)
Query: 55 MDKMLDRNNIESIKKTMQMHEEIFKHQVRELHRVYSVQKMLMGELKQH-KFWTSMN 109
MD+ L++ N ESI+ TMQ E+IFK QVRELHRVY+ QKM+M +LK ++WT N
Sbjct: 72 MDRFLEKQNAESIRHTMQAQEDIFKQQVRELHRVYNTQKMMMTQLKHRSQYWTVNN 127
>AT5G67390.2 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: Plant protein of unknown
function (DUF863) (TAIR:AT1G69360.1); Has 186 Blast hits
to 186 proteins in 18 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other
Eukaryotes - 16 (source: NCBI BLink). |
chr5:26887883-26888512 REVERSE LENGTH=176
Length = 176
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 55 MDKMLDRNNIESIKKTMQMHEEIFKHQVRELHRVYSVQKMLMGELKQHKFWTSMNNIGT 113
M+K+L+ + + +K M HEE FK QV ELHR+Y VQK+LM ++ +KF T N++ +
Sbjct: 1 MEKLLNPYDKQCMKMAMLKHEETFKQQVYELHRLYQVQKILMKNMEINKFTTKNNHVNS 59
>AT5G67390.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: Plant protein of unknown
function (DUF863) (TAIR:AT1G69360.1); Has 1807 Blast
hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink). | chr5:26887883-26888512 REVERSE LENGTH=176
Length = 176
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 55 MDKMLDRNNIESIKKTMQMHEEIFKHQVRELHRVYSVQKMLMGELKQHKFWTSMNNIGT 113
M+K+L+ + + +K M HEE FK QV ELHR+Y VQK+LM ++ +KF T N++ +
Sbjct: 1 MEKLLNPYDKQCMKMAMLKHEETFKQQVYELHRLYQVQKILMKNMEINKFTTKNNHVNS 59
>AT1G69360.1 | Symbols: | Plant protein of unknown function
(DUF863) | chr1:26072520-26075420 REVERSE LENGTH=896
Length = 896
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 67 IKKTMQMHEEIFKHQVRELHRVYSVQKMLMGELKQHKFWTSMNN 110
+K+TM HE +FK+QV ELHR+Y QK LM E+K F +NN
Sbjct: 60 LKQTMLEHEAVFKNQVYELHRLYRTQKSLMAEVKGKNFVDHLNN 103
>AT1G13940.1 | Symbols: | Plant protein of unknown function
(DUF863) | chr1:4762703-4765923 REVERSE LENGTH=1005
Length = 1005
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 23/79 (29%)
Query: 35 KELAYNNNQC---------SIGMDKLQVYMDKMLDRNNIESIKKTMQMHEEIFKHQVREL 85
K A NN+QC + G DK + +++TM HE +FK QV EL
Sbjct: 39 KTSASNNDQCYNNGFTSQTTFGFDK--------------DVVRRTMLEHEAVFKTQVLEL 84
Query: 86 HRVYSVQKMLMGELKQHKF 104
HRVY QK +M ELK+ +F
Sbjct: 85 HRVYRTQKDMMDELKRKQF 103