Miyakogusa Predicted Gene
- Lj1g3v4314280.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4314280.1 Non Chatacterized Hit- tr|B4F801|B4F801_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,34.91,0.00000000000004,seg,NULL,CUFF.32231.1
(267 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G44770.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 275 2e-74
AT1G44770.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 270 6e-73
AT5G49710.3 | Symbols: | unknown protein; BEST Arabidopsis thal... 70 2e-12
AT5G49710.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 70 2e-12
AT4G24590.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 64 7e-11
>AT1G44770.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G49710.3); Has 81 Blast hits to 81 proteins in
17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr1:16907834-16909409 REVERSE
LENGTH=271
Length = 271
Score = 275 bits (704), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 139/271 (51%), Positives = 184/271 (67%), Gaps = 4/271 (1%)
Query: 1 MTGHHALEMTKTVLEVADVAWSAVEC---GHHLRHHNSPATADQNCPSDQDXXXXXXXXX 57
MT HHA+E+TKTVLEVADVAW+AVE HH + N +T + P D++
Sbjct: 1 MTSHHAIEVTKTVLEVADVAWTAVETYHHHHHHQDENHESTNPISDPRDRELEALRQENR 60
Query: 58 XXXXXXXXXXXXXXXXSESPSFLNNCPPDLHTRLVATVKSDEYLTRLKFLQQETAGGG-N 116
+ES +F ++CP DL+ RLV V S ++L RL+ L+Q + G N
Sbjct: 61 RLRTLLESNLKLFETLAESAAFSHDCPSDLYARLVTMVTSRDFLARLENLRQALSNGTQN 120
Query: 117 QFPFKEATEVDYRSADILINVDSKEPSWWVWVTDEMDPSNVEETSGIDDENYLVIGEEHV 176
QFPFKE TE D ++ ++LI +D +EPSWWV VTD+M PSNVEE S ID+E+Y+V+ EEHV
Sbjct: 121 QFPFKEPTEDDVKTVEVLIEMDHQEPSWWVLVTDDMVPSNVEEQSAIDNEHYIVVNEEHV 180
Query: 177 IEGVANFMARCIVSNPKALKLSPEELQKTLSKALCGTSKLEKILDIWSAGKMFYALSTWG 236
I+ VA+F+A+CI+SNPKA L PEELQK L + + SK+ K++DIW AGKMFY LSTWG
Sbjct: 181 IDAVAHFLAKCIMSNPKAKNLKPEELQKLLVQEVTALSKVGKVVDIWHAGKMFYTLSTWG 240
Query: 237 LALAGLYQSRALLKVAAHGVHSGSKLALKCL 267
LA GLYQ+R +LK+AA GVH+ SK+ L+ L
Sbjct: 241 LAFGGLYQARGVLKIAAKGVHATSKVVLRAL 271
>AT1G44770.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G49710.3); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr1:16907834-16909409 REVERSE LENGTH=270
Length = 270
Score = 270 bits (691), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 138/271 (50%), Positives = 184/271 (67%), Gaps = 5/271 (1%)
Query: 1 MTGHHALEMTKTVLEVADVAWSAVEC---GHHLRHHNSPATADQNCPSDQDXXXXXXXXX 57
MT HHA+E+TKTVLEVADVAW+AVE HH + N +T + P D++
Sbjct: 1 MTSHHAIEVTKTVLEVADVAWTAVETYHHHHHHQDENHESTNPISDPRDRELEALRQENR 60
Query: 58 XXXXXXXXXXXXXXXXSESPSFLNNCPPDLHTRLVATVKSDEYLTRLKFLQQETAGGG-N 116
+ES +F ++CP DL+ RLV V S ++L RL+ L+Q + G N
Sbjct: 61 RLRTLLESNLKLFETLAESAAFSHDCPSDLYARLVTMVTSRDFLARLENLRQALSNGTQN 120
Query: 117 QFPFKEATEVDYRSADILINVDSKEPSWWVWVTDEMDPSNVEETSGIDDENYLVIGEEHV 176
QFPFKE T+ D ++ ++LI +D +EPSWWV VTD+M PSNVEE S ID+E+Y+V+ EEHV
Sbjct: 121 QFPFKEPTD-DVKTVEVLIEMDHQEPSWWVLVTDDMVPSNVEEQSAIDNEHYIVVNEEHV 179
Query: 177 IEGVANFMARCIVSNPKALKLSPEELQKTLSKALCGTSKLEKILDIWSAGKMFYALSTWG 236
I+ VA+F+A+CI+SNPKA L PEELQK L + + SK+ K++DIW AGKMFY LSTWG
Sbjct: 180 IDAVAHFLAKCIMSNPKAKNLKPEELQKLLVQEVTALSKVGKVVDIWHAGKMFYTLSTWG 239
Query: 237 LALAGLYQSRALLKVAAHGVHSGSKLALKCL 267
LA GLYQ+R +LK+AA GVH+ SK+ L+ L
Sbjct: 240 LAFGGLYQARGVLKIAAKGVHATSKVVLRAL 270
>AT5G49710.3 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G24590.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr5:20195561-20197188 FORWARD LENGTH=235
Length = 235
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 58/98 (59%)
Query: 158 EETSGIDDENYLVIGEEHVIEGVANFMARCIVSNPKALKLSPEELQKTLSKALCGTSKLE 217
+ET +E+Y+++ EE + EG+A FMA + S + L+PE+LQK LS+ ++
Sbjct: 126 DETMAQREEDYVLVREEDIAEGIACFMATYLQSLKQTKDLTPEQLQKALSRMFSVKNRKG 185
Query: 218 KILDIWSAGKMFYALSTWGLALAGLYQSRALLKVAAHG 255
K+ W K+ Y +++W + G+YQ+ +L+VA+
Sbjct: 186 KLRKAWDGSKVAYNVASWSATVIGIYQNPVILRVASKA 223
>AT5G49710.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G24590.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr5:20195561-20197188 FORWARD LENGTH=234
Length = 234
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 58/98 (59%)
Query: 158 EETSGIDDENYLVIGEEHVIEGVANFMARCIVSNPKALKLSPEELQKTLSKALCGTSKLE 217
+ET +E+Y+++ EE + EG+A FMA + S + L+PE+LQK LS+ ++
Sbjct: 125 DETMAQREEDYVLVREEDIAEGIACFMATYLQSLKQTKDLTPEQLQKALSRMFSVKNRKG 184
Query: 218 KILDIWSAGKMFYALSTWGLALAGLYQSRALLKVAAHG 255
K+ W K+ Y +++W + G+YQ+ +L+VA+
Sbjct: 185 KLRKAWDGSKVAYNVASWSATVIGIYQNPVILRVASKA 222
>AT4G24590.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G49710.3); Has 105 Blast hits to 105 proteins
in 26 species: Archae - 0; Bacteria - 0; Metazoa - 8;
Fungi - 3; Plants - 85; Viruses - 0; Other Eukaryotes -
9 (source: NCBI BLink). | chr4:12696651-12698036 FORWARD
LENGTH=241
Length = 241
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 54/98 (55%)
Query: 158 EETSGIDDENYLVIGEEHVIEGVANFMARCIVSNPKALKLSPEELQKTLSKALCGTSKLE 217
EE G +++Y+V+ EE + +G+A FMA + S + +SP++LQK LS +
Sbjct: 132 EECVGQTEDDYVVVREEDIADGIACFMATYLSSLKQTKDISPDQLQKALSTMFSVKKRKG 191
Query: 218 KILDIWSAGKMFYALSTWGLALAGLYQSRALLKVAAHG 255
K+ W K+ Y +++W G+YQ+ +L +A+
Sbjct: 192 KLRKAWEGSKVIYNVASWSATAIGIYQNPMILSIASKA 229