Miyakogusa Predicted Gene

Lj1g3v4289040.2
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4289040.2 CUFF.32202.2
         (115 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G16440.1 | Symbols: MCM4 | Minichromosome maintenance (MCM2/3...    90   3e-19

>AT2G16440.1 | Symbols: MCM4 | Minichromosome maintenance (MCM2/3/5)
           family protein | chr2:7126536-7130665 REVERSE LENGTH=847
          Length = 847

 Score = 89.7 bits (221), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/66 (54%), Positives = 51/66 (77%)

Query: 48  SDFERMVSFKGMIIQCSSIIAEIREAIFRCLVCGFCTEPVAVERGRITVPTICLREDCTG 107
           SD E+M+S KGMII+ SSII EIREA+FRCLVCG+ ++P+ V+RG+I+ P  CL+++C  
Sbjct: 242 SDIEKMISLKGMIIRSSSIIPEIREAVFRCLVCGYFSDPIIVDRGKISEPPTCLKQECMT 301

Query: 108 SQPMQV 113
              M +
Sbjct: 302 KNSMTL 307