Miyakogusa Predicted Gene
- Lj1g3v4277620.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4277620.1 Non Chatacterized Hit- tr|I1KKL9|I1KKL9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.29541 PE,91.91,0,P-loop
containing nucleoside triphosphate hydrolases,NULL; no
description,NULL; HELICASE_CTER,Helica,CUFF.32160.1
(140 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containi... 228 1e-60
AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containi... 125 8e-30
AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator | chr3:... 112 1e-25
AT5G19310.1 | Symbols: | Homeotic gene regulator | chr5:6498906... 110 4e-25
AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr... 108 8e-25
AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 | chr2:5544... 106 4e-24
AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin re... 105 7e-24
AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog | chr3:21... 105 1e-23
AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putat... 105 1e-23
AT3G57300.2 | Symbols: INO80 | INO80 ortholog | chr3:21199612-21... 105 1e-23
AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putat... 105 1e-23
AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDD... 102 6e-23
AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 102 1e-22
AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 102 1e-22
AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 102 1e-22
AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 | chr2:8129... 100 3e-22
AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 | c... 99 7e-22
AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 | c... 99 8e-22
AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helic... 92 9e-20
AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA ... 91 2e-19
AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic ac... 91 2e-19
AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 ... 89 9e-19
AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 | chr3:6652799-6... 89 1e-18
AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helic... 87 3e-18
AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 87 3e-18
AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 87 3e-18
AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 87 3e-18
AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domai... 87 3e-18
AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside triph... 86 8e-18
AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside triph... 86 8e-18
AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside triph... 86 8e-18
AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleosid... 86 8e-18
AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORW... 85 2e-17
AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein | chr5:75... 84 3e-17
AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 | chr5:25... 81 3e-16
AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosph... 79 7e-16
AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helic... 79 1e-15
AT1G48310.1 | Symbols: CHR18, CHA18 | chromatin remodeling facto... 77 3e-15
AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helic... 76 9e-15
AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domai... 75 1e-14
AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein / ... 75 2e-14
AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein / ... 74 2e-14
AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 73 6e-14
AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 73 6e-14
AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helic... 71 2e-13
AT5G05130.1 | Symbols: | DNA/RNA helicase protein | chr5:151217... 70 4e-13
AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helic... 69 8e-13
AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helic... 69 8e-13
AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 | chr1:16... 67 3e-12
AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 | chr3:88... 66 9e-12
AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containin... 65 1e-11
AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 | chr2:91... 65 1e-11
AT5G07810.1 | Symbols: | SNF2 domain-containing protein / helic... 64 3e-11
AT2G40770.1 | Symbols: | zinc ion binding;DNA binding;helicases... 62 1e-10
AT5G20420.1 | Symbols: CHR42 | chromatin remodeling 42 | chr5:68... 60 4e-10
AT3G42670.1 | Symbols: CHR38, CLSY | chromatin remodeling 38 | c... 60 7e-10
>AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:523481-526884 FORWARD LENGTH=763
Length = 763
Score = 228 bits (580), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 108/132 (81%), Positives = 120/132 (90%), Gaps = 1/132 (0%)
Query: 9 FYYLTASTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQID 68
+ L STQV +RQTIVDTFNND SIFACLLSTRAGGQGLNLTGADTV+IHDMDFNPQID
Sbjct: 631 YRRLDGSTQVTDRQTIVDTFNNDKSIFACLLSTRAGGQGLNLTGADTVIIHDMDFNPQID 690
Query: 69 RQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLETMEEINE-GDMPE 127
RQAEDRCHRIGQTKPVTI+RLVTK TVDEN+YEIAKRKLVLDAAVLE+ +++ GD PE
Sbjct: 691 RQAEDRCHRIGQTKPVTIFRLVTKSTVDENIYEIAKRKLVLDAAVLESGVHVDDNGDTPE 750
Query: 128 KTMGEILSSILL 139
KTMGEIL+S+L+
Sbjct: 751 KTMGEILASLLM 762
>AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr3:4065636-4073992 FORWARD LENGTH=2055
Length = 2055
Score = 125 bits (314), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 80/110 (72%)
Query: 9 FYYLTASTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQID 68
+ L ST ERQT++ FN + IF +LSTR+GG G+NL GADTV+ +D D+NP +D
Sbjct: 1118 YMRLDGSTPPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMD 1177
Query: 69 RQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLETME 118
+QA+DRCHRIGQT+ V IYRL+++ T++EN+ + A +K VLD V++ E
Sbjct: 1178 QQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRVLDNLVIQNGE 1227
>AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator |
chr3:1802435-1807284 REVERSE LENGTH=1102
Length = 1102
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 83/120 (69%), Gaps = 4/120 (3%)
Query: 1 MQLSLTL---KFYYLTASTQVAERQTIVDTFNN-DTSIFACLLSTRAGGQGLNLTGADTV 56
+++ LTL K+ L +T+ +R ++ FN D+ F LLSTRAGG GLNL ADTV
Sbjct: 745 LEIYLTLNDYKYLRLDGTTKTDQRGLLLKQFNEPDSPYFMFLLSTRAGGLGLNLQTADTV 804
Query: 57 VIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLET 116
+I D D+NPQ+D+QAEDR HRIGQ K V ++ LV+ G+V+E + E AK+K+ +DA V++
Sbjct: 805 IIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVILERAKQKMGIDAKVIQA 864
>AT5G19310.1 | Symbols: | Homeotic gene regulator |
chr5:6498906-6503432 FORWARD LENGTH=1064
Length = 1064
Score = 110 bits (274), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Query: 9 FYYLTASTQVAERQTIVDTFNN-DTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQI 67
+ L ST+ +R ++ FN D+ F LLSTRAGG GLNL ADT++I D D+NPQ+
Sbjct: 738 YLRLDGSTKTDQRGILLKQFNEPDSPYFMFLLSTRAGGLGLNLQTADTIIIFDSDWNPQM 797
Query: 68 DRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLET 116
D+QAEDR HRIGQ K V ++ LV+ G+++E + E AK+K+ +DA V++
Sbjct: 798 DQQAEDRAHRIGQKKEVRVFVLVSIGSIEEVILERAKQKMGIDAKVIQA 846
>AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 |
chr5:18083659-18092162 REVERSE LENGTH=2223
Length = 2223
Score = 108 bits (271), Expect = 8e-25, Method: Composition-based stats.
Identities = 52/102 (50%), Positives = 71/102 (69%)
Query: 9 FYYLTASTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQID 68
F + S VA+RQ + FN D + F LLSTRA G G+NL ADTV+I+D DFNP D
Sbjct: 1049 FERVDGSVAVADRQAAIARFNQDKNRFVFLLSTRACGLGINLATADTVIIYDSDFNPHAD 1108
Query: 69 RQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLD 110
QA +R HRIGQ+K + +YRLV + +V+E + ++AK+KL+LD
Sbjct: 1109 IQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLD 1150
>AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 |
chr2:5544601-5555543 REVERSE LENGTH=1724
Length = 1724
Score = 106 bits (265), Expect = 4e-24, Method: Composition-based stats.
Identities = 59/112 (52%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
Query: 7 LKFYYLTASTQVAERQTIVDTFNNDTSI-FACLLSTRAGGQGLNLTGADTVVIHDMDFNP 65
+F L ST+ RQ +D FN S F LLSTRAGG G+NL ADTVVI D D+NP
Sbjct: 980 FQFQRLDGSTKAELRQQAMDHFNAPASDDFCFLLSTRAGGLGINLATADTVVIFDSDWNP 1039
Query: 66 QIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLETM 117
Q D QA R HRIGQ + V IYR VT +V+E + E AKRK+VLD V++ +
Sbjct: 1040 QNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEEILERAKRKMVLDHLVIQKL 1091
>AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin
remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763
FORWARD LENGTH=1384
Length = 1384
Score = 105 bits (263), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Query: 19 AERQTIVDTFN-NDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHR 77
AERQ +D FN +++ F LLSTRAGG G+NL ADTV+I+D D+NP D QA R HR
Sbjct: 648 AERQIRIDRFNAKNSNKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHR 707
Query: 78 IGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLETMEEIN 121
+GQT V IYRL+ +GT++E + ++ K+K+VL+ V+ ++ N
Sbjct: 708 LGQTNKVMIYRLINRGTIEERMMQLTKKKMVLEHLVVGKLKTQN 751
>AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1507
Length = 1507
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 72/107 (67%)
Query: 8 KFYYLTASTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQI 67
K+ L S+ + +R+ +V F + + IF LLSTRAGG G+NLT ADTV+ ++ D+NP +
Sbjct: 1248 KYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTL 1307
Query: 68 DRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVL 114
D QA DR HR+GQTK VT+YRL+ K TV+E + A +K + V+
Sbjct: 1308 DLQAMDRAHRLGQTKDVTVYRLICKETVEEKILHRASQKNTVQQLVM 1354
>AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1202
Length = 1202
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 67/97 (69%), Gaps = 1/97 (1%)
Query: 19 AERQTIVDTFNNDTS-IFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHR 77
ERQ +D FN + S F LLSTRAGG G+NL ADTV+I+D D+NP D QA R HR
Sbjct: 577 PERQVRIDRFNAENSNRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARVHR 636
Query: 78 IGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVL 114
+GQT V IYRL+ KGTV+E + EI K K++L+ V+
Sbjct: 637 LGQTNKVMIYRLIHKGTVEERMMEITKNKMLLEHLVV 673
>AT3G57300.2 | Symbols: INO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1540
Length = 1540
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 72/107 (67%)
Query: 8 KFYYLTASTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQI 67
K+ L S+ + +R+ +V F + + IF LLSTRAGG G+NLT ADTV+ ++ D+NP +
Sbjct: 1281 KYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTL 1340
Query: 68 DRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVL 114
D QA DR HR+GQTK VT+YRL+ K TV+E + A +K + V+
Sbjct: 1341 DLQAMDRAHRLGQTKDVTVYRLICKETVEEKILHRASQKNTVQQLVM 1387
>AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1161
Length = 1161
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 20 ERQTIVDTFNNDTS-IFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRI 78
ERQ +D FN + S F LLSTRAGG G+NL ADTV+I+D D+NP D QA R HR+
Sbjct: 537 ERQVRIDRFNAENSNRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARVHRL 596
Query: 79 GQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVL 114
GQT V IYRL+ KGTV+E + EI K K++L+ V+
Sbjct: 597 GQTNKVMIYRLIHKGTVEERMMEITKNKMLLEHLVV 632
>AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1
| chromatin remodeling 1 | chr5:26649050-26652869
FORWARD LENGTH=764
Length = 764
Score = 102 bits (255), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 73/106 (68%), Gaps = 5/106 (4%)
Query: 12 LTASTQVAERQTIVDTFNNDTS---IFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQID 68
+ S ++ ER+ + F+++ S IF LLSTRAGG G+NLT ADT +++D D+NPQ+D
Sbjct: 570 IDGSVKLDERRRQIKDFSDEKSSCSIF--LLSTRAGGLGINLTAADTCILYDSDWNPQMD 627
Query: 69 RQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVL 114
QA DRCHRIGQTKPV +YRL T +++ V + A KL L+ V+
Sbjct: 628 LQAMDRCHRIGQTKPVHVYRLSTAQSIETRVLKRAYSKLKLEHVVI 673
>AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1057
Length = 1057
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 20 ERQTIVDTFNNDTS-IFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRI 78
ER ++ +N S F LLSTRAGG G+NL AD V+++D D+NPQ+D QA+DR HRI
Sbjct: 544 ERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRI 603
Query: 79 GQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLE 115
GQ K V ++R T+ ++E V E A +KL LDA V++
Sbjct: 604 GQKKEVQVFRFCTESAIEEKVIERAYKKLALDALVIQ 640
>AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1056
Length = 1056
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 20 ERQTIVDTFNNDTS-IFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRI 78
ER ++ +N S F LLSTRAGG G+NL AD V+++D D+NPQ+D QA+DR HRI
Sbjct: 544 ERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRI 603
Query: 79 GQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLE 115
GQ K V ++R T+ ++E V E A +KL LDA V++
Sbjct: 604 GQKKEVQVFRFCTESAIEEKVIERAYKKLALDALVIQ 640
>AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1055
Length = 1055
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 20 ERQTIVDTFNNDTS-IFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRI 78
ER ++ +N S F LLSTRAGG G+NL AD V+++D D+NPQ+D QA+DR HRI
Sbjct: 544 ERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRI 603
Query: 79 GQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLE 115
GQ K V ++R T+ ++E V E A +KL LDA V++
Sbjct: 604 GQKKEVQVFRFCTESAIEEKVIERAYKKLALDALVIQ 640
>AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 |
chr2:8129154-8133502 FORWARD LENGTH=1187
Length = 1187
Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 67/104 (64%)
Query: 16 TQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRC 75
T V +R ++D FNN +F +L+T+ GG G NLTGA+ V+I D D+NP D QA +R
Sbjct: 777 TPVKQRMALIDEFNNSEDMFVFVLTTKVGGLGTNLTGANRVIIFDPDWNPSNDMQARERA 836
Query: 76 HRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLETMEE 119
RIGQ K VT+YRL+T+GT++E VY K L +L+ ++
Sbjct: 837 WRIGQKKDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ 880
>AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1072
Length = 1072
Score = 99.4 bits (246), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 20 ERQTIVDTFNNDTS-IFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRI 78
ER ++ +N S F LLSTRAGG G+NL AD V+++D D+NPQ+D QA+DR HRI
Sbjct: 549 ERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRI 608
Query: 79 GQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLE 115
GQ K V ++R T+ ++ V E A +KL LDA V++
Sbjct: 609 GQKKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQ 645
>AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1069
Length = 1069
Score = 99.0 bits (245), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 20 ERQTIVDTFNNDTS-IFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRI 78
ER ++ +N S F LLSTRAGG G+NL AD V+++D D+NPQ+D QA+DR HRI
Sbjct: 549 ERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRI 608
Query: 79 GQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLE 115
GQ K V ++R T+ ++ V E A +KL LDA V++
Sbjct: 609 GQKKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQ 645
>AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552440-18556669
REVERSE LENGTH=851
Length = 851
Score = 92.4 bits (228), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
Query: 12 LTASTQVAERQTIVDTFNNDTS-IFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQ 70
L S + ER + F+ D S F ++STRAGG GLNL ADTV+ ++ D+NPQ+D+Q
Sbjct: 414 LDGSVRAEERFAAIKNFSVDGSNAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQ 473
Query: 71 AEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVL-ETMEEINE--GDMPE 127
A R HRIGQ V LVT+ +V+E + A+RKL L V+ + MEE E GD+
Sbjct: 474 ALQRAHRIGQISHVLSINLVTEHSVEEVILRRAERKLQLSHNVVGDNMEEKEEDGGDLRS 533
Query: 128 KTMG 131
G
Sbjct: 534 LVFG 537
>AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA
binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20103807 FORWARD
LENGTH=2045
Length = 2045
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 64/102 (62%)
Query: 6 TLKFYYLTASTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNP 65
++ + L S +R IV FN+D +I LL+T GG GLNLT ADT+V + D+NP
Sbjct: 1857 SVTYMRLDGSVVPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFMEHDWNP 1916
Query: 66 QIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKL 107
D QA DR HR+GQ + V ++RL+ +GT++E V + K K+
Sbjct: 1917 MRDHQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMSLQKFKV 1958
>AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20104153 FORWARD
LENGTH=2129
Length = 2129
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 64/102 (62%)
Query: 6 TLKFYYLTASTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNP 65
++ + L S +R IV FN+D +I LL+T GG GLNLT ADT+V + D+NP
Sbjct: 1888 SVTYMRLDGSVVPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFMEHDWNP 1947
Query: 66 QIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKL 107
D QA DR HR+GQ + V ++RL+ +GT++E V + K K+
Sbjct: 1948 MRDHQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMSLQKFKV 1989
>AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=910
Length = 910
Score = 89.0 bits (219), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 63/94 (67%), Gaps = 1/94 (1%)
Query: 9 FYYLTASTQVAERQTIVDTFNNDTSI-FACLLSTRAGGQGLNLTGADTVVIHDMDFNPQI 67
F L ST +++RQ +V+ N+ T FA LLS++AGG GLNL GA+ +V+ D D+NP
Sbjct: 578 FLRLDGSTTISKRQKLVNRLNDPTKDEFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPAN 637
Query: 68 DRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYE 101
D+QA R R GQ K V +YR ++ GT++E VY+
Sbjct: 638 DKQAAARVWRDGQKKRVYVYRFLSTGTIEEKVYQ 671
>AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=908
Length = 908
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 63/94 (67%), Gaps = 1/94 (1%)
Query: 9 FYYLTASTQVAERQTIVDTFNNDTSI-FACLLSTRAGGQGLNLTGADTVVIHDMDFNPQI 67
F L ST +++RQ +V+ N+ T FA LLS++AGG GLNL GA+ +V+ D D+NP
Sbjct: 576 FLRLDGSTTISKRQKLVNRLNDPTKDEFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPAN 635
Query: 68 DRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYE 101
D+QA R R GQ K V +YR ++ GT++E VY+
Sbjct: 636 DKQAAARVWRDGQKKRVYVYRFLSTGTIEEKVYQ 669
>AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552343-18556669
REVERSE LENGTH=877
Length = 877
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 73/134 (54%), Gaps = 14/134 (10%)
Query: 12 LTASTQVAERQTIVDTFNNDT-----------SIFACLLSTRAGGQGLNLTGADTVVIHD 60
L S + ER + F+ T + F ++STRAGG GLNL ADTV+ ++
Sbjct: 423 LDGSVRAEERFAAIKNFSAKTERGLDSEVDGSNAFVFMISTRAGGVGLNLVAADTVIFYE 482
Query: 61 MDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVL-ETMEE 119
D+NPQ+D+QA R HRIGQ V LVT+ +V+E + A+RKL L V+ + MEE
Sbjct: 483 QDWNPQVDKQALQRAHRIGQISHVLSINLVTEHSVEEVILRRAERKLQLSHNVVGDNMEE 542
Query: 120 INE--GDMPEKTMG 131
E GD+ G
Sbjct: 543 KEEDGGDLRSLVFG 556
>AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3543
Length = 3543
Score = 87.0 bits (214), Expect = 3e-18, Method: Composition-based stats.
Identities = 52/111 (46%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Query: 1 MQLSLTLKFY---YLTASTQVAERQTIVDTFNNDTS-IFACLLSTRAGGQGLNLTGADTV 56
M+ LTLK Y L T +R ++D FN S F LLS RAGG G+NL ADTV
Sbjct: 1105 MEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQAADTV 1164
Query: 57 VIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKL 107
++ D D+NPQ+D QA+ R HRIGQ K V + R T +V+E V A+ KL
Sbjct: 1165 ILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKL 1215
>AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3529
Length = 3529
Score = 87.0 bits (214), Expect = 3e-18, Method: Composition-based stats.
Identities = 52/111 (46%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Query: 1 MQLSLTLKFY---YLTASTQVAERQTIVDTFNNDTS-IFACLLSTRAGGQGLNLTGADTV 56
M+ LTLK Y L T +R ++D FN S F LLS RAGG G+NL ADTV
Sbjct: 1105 MEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQAADTV 1164
Query: 57 VIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKL 107
++ D D+NPQ+D QA+ R HRIGQ K V + R T +V+E V A+ KL
Sbjct: 1165 ILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKL 1215
>AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3574
Length = 3574
Score = 87.0 bits (214), Expect = 3e-18, Method: Composition-based stats.
Identities = 52/111 (46%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Query: 1 MQLSLTLKFY---YLTASTQVAERQTIVDTFNNDTS-IFACLLSTRAGGQGLNLTGADTV 56
M+ LTLK Y L T +R ++D FN S F LLS RAGG G+NL ADTV
Sbjct: 1105 MEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQAADTV 1164
Query: 57 VIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKL 107
++ D D+NPQ+D QA+ R HRIGQ K V + R T +V+E V A+ KL
Sbjct: 1165 ILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKL 1215
>AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domain |
chr1:1471624-1476067 REVERSE LENGTH=833
Length = 833
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 69/120 (57%), Gaps = 3/120 (2%)
Query: 12 LTASTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQA 71
L S +A R T ++ F D L+S +AGG LNLT A V + D +NP ++RQA
Sbjct: 710 LVGSMTMAARDTAINKFKEDPDCRVFLMSLKAGGVALNLTVASHVFMMDPWWNPAVERQA 769
Query: 72 EDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRK-LVLDAAVLETMEEINEGDMPEKTM 130
+DR HRIGQ KP+ + R + + TV+E + + K+K LV + V + E I G + E+ M
Sbjct: 770 QDRIHRIGQYKPIRVVRFIIENTVEERILRLQKKKELVFEGTVGGSQEAI--GKLTEEDM 827
>AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 85.9 bits (211), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 9 FYYLTASTQVAERQTIVDTFNN-DTSIFAC-LLSTRAGGQGLNLTGADTVVIHDMDFNPQ 66
+Y + T+ +ERQ +VD FN D C L+STRAG G+NL A+ V+I D +NP
Sbjct: 1170 WYRIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPT 1229
Query: 67 IDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLE 115
D QA R R GQ KPV YRL+ +GT++E +Y+ K L A V++
Sbjct: 1230 YDLQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVD 1278
>AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 85.9 bits (211), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 9 FYYLTASTQVAERQTIVDTFNN-DTSIFAC-LLSTRAGGQGLNLTGADTVVIHDMDFNPQ 66
+Y + T+ +ERQ +VD FN D C L+STRAG G+NL A+ V+I D +NP
Sbjct: 1170 WYRIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPT 1229
Query: 67 IDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLE 115
D QA R R GQ KPV YRL+ +GT++E +Y+ K L A V++
Sbjct: 1230 YDLQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVD 1278
>AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 85.9 bits (211), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 9 FYYLTASTQVAERQTIVDTFNN-DTSIFAC-LLSTRAGGQGLNLTGADTVVIHDMDFNPQ 66
+Y + T+ +ERQ +VD FN D C L+STRAG G+NL A+ V+I D +NP
Sbjct: 1170 WYRIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPT 1229
Query: 67 IDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLE 115
D QA R R GQ KPV YRL+ +GT++E +Y+ K L A V++
Sbjct: 1230 YDLQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVD 1278
>AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1458
Length = 1458
Score = 85.9 bits (211), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 9 FYYLTASTQVAERQTIVDTFNN-DTSIFAC-LLSTRAGGQGLNLTGADTVVIHDMDFNPQ 66
+Y + T+ +ERQ +VD FN D C L+STRAG G+NL A+ V+I D +NP
Sbjct: 1149 WYRIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPT 1208
Query: 67 IDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLE 115
D QA R R GQ KPV YRL+ +GT++E +Y+ K L A V++
Sbjct: 1209 YDLQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVD 1257
>AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORWARD
LENGTH=862
Length = 862
Score = 84.7 bits (208), Expect = 2e-17, Method: Composition-based stats.
Identities = 49/112 (43%), Positives = 70/112 (62%), Gaps = 3/112 (2%)
Query: 9 FYYLTASTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQID 68
F L ST RQ++VD FN S L+ST+AGG GLNL A+ VVI D ++NP D
Sbjct: 571 FARLDGSTPTNLRQSLVDDFNASPSKQVFLISTKAGGLGLNLVSANRVVIFDPNWNPSHD 630
Query: 69 RQAEDRCHRIGQTKPVTIYRLVTKGTVDENVY--EIAKRKLVLDAAVLETME 118
QA+DR R GQ + V ++RL++ G+++E VY ++ K++L + AV ME
Sbjct: 631 LQAQDRSFRYGQKRHVVVFRLLSAGSLEELVYTRQVYKQQLS-NIAVAGKME 681
>AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein |
chr5:7565374-7570871 REVERSE LENGTH=1029
Length = 1029
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 72/133 (54%), Gaps = 4/133 (3%)
Query: 1 MQLSLT---LKFYYLTASTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVV 57
+Q+ L+ F L + +R+ ++ F+ D SI L+S +AGG G+NLT A
Sbjct: 895 LQIPLSRNNFSFVRLDGTLSQQQREKVLKEFSEDGSILVLLMSLKAGGVGINLTAASNAF 954
Query: 58 IHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLETM 117
+ D +NP ++ QA R HRIGQTK V I R + KGTV+E + + RK + + L T
Sbjct: 955 VMDPWWNPAVEEQAVMRIHRIGQTKEVKIRRFIVKGTVEERMEAVQARKQRMISGAL-TD 1013
Query: 118 EEINEGDMPEKTM 130
+E+ + E M
Sbjct: 1014 QEVRSARIEELKM 1026
>AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 |
chr5:25592160-25598405 REVERSE LENGTH=1090
Length = 1090
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 4/114 (3%)
Query: 9 FYYLTASTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQID 68
F + +T+ +R V+ F LL+++ GG GL LT AD V++ D +NP D
Sbjct: 775 FLRIDGTTKAPDRLKTVEEFQEGHVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTD 834
Query: 69 RQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLETMEEINE 122
Q+ DR +RIGQTK V +YRL+T TV+E +Y RK V + +T E E
Sbjct: 835 NQSVDRAYRIGQTKDVIVYRLMTSATVEEKIY----RKQVYKGGLFKTATEHKE 884
>AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:576046-580299
FORWARD LENGTH=678
Length = 678
Score = 79.3 bits (194), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 59/108 (54%)
Query: 12 LTASTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQA 71
L S A + + F + L+S +AGG LNLT A V + D +NP ++RQA
Sbjct: 555 LVGSMSKAAKDAALKNFKEEPDCRVLLMSLQAGGVALNLTAASHVFMMDPWWNPAVERQA 614
Query: 72 EDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLETMEE 119
+DR HRIGQ KPV + R + + TV+E + + K+K L + L EE
Sbjct: 615 QDRIHRIGQCKPVRVVRFIMEKTVEEKILTLQKKKEDLFESTLGDSEE 662
>AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:18672828-18677365 FORWARD LENGTH=981
Length = 981
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 69/116 (59%), Gaps = 5/116 (4%)
Query: 1 MQLSL---TLKFYYLTASTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVV 57
++LSL +++F L + + R V F+ND + ++S +AG GLN+ A V+
Sbjct: 842 VELSLIENSIEFRRLDGTMSLIARDRAVKEFSNDPDVKVMIMSLKAGNLGLNMIAACHVI 901
Query: 58 IHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIA--KRKLVLDA 111
+ D+ +NP + QA DR HRIGQT+PVT+ R+ K TV++ + + KRK+V A
Sbjct: 902 LLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKNTVEDRILALQEEKRKMVASA 957
>AT1G48310.1 | Symbols: CHR18, CHA18 | chromatin remodeling factor18
| chr1:17848620-17853731 REVERSE LENGTH=673
Length = 673
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 56/96 (58%)
Query: 12 LTASTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQA 71
+ ST + RQ +V F + I A +LS RA G G+ LT A TV+ ++ + P QA
Sbjct: 514 IDGSTPASSRQALVSDFQDKDEIKAAVLSIRAAGVGITLTAASTVIFAELSWTPGDLIQA 573
Query: 72 EDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKL 107
EDR HRIGQ V I+ L+ TVD+ ++++ + KL
Sbjct: 574 EDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKL 609
>AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr3:6971352-6976340 FORWARD LENGTH=1047
Length = 1047
Score = 75.9 bits (185), Expect = 9e-15, Method: Composition-based stats.
Identities = 37/108 (34%), Positives = 62/108 (57%)
Query: 7 LKFYYLTASTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQ 66
++F L + +A R V F+ + L+S +AG GLN+ A V++ D+ +NP
Sbjct: 917 IEFRRLDGTMSLAARDRAVKEFSKKPDVKVMLMSLKAGNLGLNMVAACHVILLDLWWNPT 976
Query: 67 IDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVL 114
+ QA DR HRIGQT+PVT+ R+ K TV++ + ++ + K + A+
Sbjct: 977 TEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILKLQEEKRTMVASAF 1024
>AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domain |
chr5:17489327-17494830 FORWARD LENGTH=1277
Length = 1277
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 3/124 (2%)
Query: 9 FYYLTASTQVAE--RQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQ 66
F +L ++A+ R+ ++ FN L+S +AGG GLNLT A +V + D +NP
Sbjct: 1152 FEFLRFDGKLAQKGREKVLKEFNETKQKTILLMSLKAGGVGLNLTAASSVFLMDPWWNPA 1211
Query: 67 IDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLETMEEINEGDMP 126
++ QA R HRIGQ + V + R + K TV+E + ++ RK + A L T EE+ +
Sbjct: 1212 VEEQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQVQARKQRMIAGAL-TDEEVRSARLE 1270
Query: 127 EKTM 130
E M
Sbjct: 1271 ELKM 1274
>AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22539756 REVERSE
LENGTH=1122
Length = 1122
Score = 74.7 bits (182), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 63/112 (56%)
Query: 3 LSLTLKFYYLTASTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMD 62
+S +++ L + VA R V FN + ++S +A GLN+ A V++ D+
Sbjct: 986 VSSHIQYRRLDGTMSVAARDKAVQDFNTLPEVTVMIMSLKAASLGLNMVAACHVLMLDLW 1045
Query: 63 FNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVL 114
+NP + QA DR HRIGQT+PVT+ R K TV++ + + ++K ++ A+
Sbjct: 1046 WNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDTVEDRILALQQKKRMMVASAF 1097
>AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22540610 REVERSE
LENGTH=1280
Length = 1280
Score = 74.3 bits (181), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 63/112 (56%)
Query: 3 LSLTLKFYYLTASTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMD 62
+S +++ L + VA R V FN + ++S +A GLN+ A V++ D+
Sbjct: 1144 VSSHIQYRRLDGTMSVAARDKAVQDFNTLPEVTVMIMSLKAASLGLNMVAACHVLMLDLW 1203
Query: 63 FNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVL 114
+NP + QA DR HRIGQT+PVT+ R K TV++ + + ++K ++ A+
Sbjct: 1204 WNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDTVEDRILALQQKKRMMVASAF 1255
>AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2193
Length = 2193
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 7 LKFYYLTASTQVAERQTIVDTFNN-DTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNP 65
L + + +T + +R++ + FN+ DT F LLS RA G+GLNL ADTVVI+D D NP
Sbjct: 1349 LVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQTADTVVIYDPDPNP 1408
Query: 66 QIDRQAEDRCHRIGQTKPVTI 86
+ + QA R HRIGQT+ V +
Sbjct: 1409 KNEEQAVARAHRIGQTREVKV 1429
>AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2192
Length = 2192
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 7 LKFYYLTASTQVAERQTIVDTFNN-DTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNP 65
L + + +T + +R++ + FN+ DT F LLS RA G+GLNL ADTVVI+D D NP
Sbjct: 1348 LVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQTADTVVIYDPDPNP 1407
Query: 66 QIDRQAEDRCHRIGQTKPVTI 86
+ + QA R HRIGQT+ V +
Sbjct: 1408 KNEEQAVARAHRIGQTREVKV 1428
>AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr3:5652839-5655670 REVERSE LENGTH=638
Length = 638
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 61/105 (58%), Gaps = 5/105 (4%)
Query: 14 ASTQVAERQTIVDTFNNDTSI----FACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDR 69
+S RQ+ T N D SI A L+S +AG GLN+ A V++ D+ +NP +
Sbjct: 484 SSVACRARQSRHST-NKDNSISGLVCAMLMSLKAGNLGLNMVAASHVILLDLWWNPTTED 542
Query: 70 QAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVL 114
QA DR HRIGQT+ VT+ R+ K TV+E + + +RK + A+ L
Sbjct: 543 QAIDRAHRIGQTRAVTVTRIAIKNTVEERILTLHERKRNIVASAL 587
>AT5G05130.1 | Symbols: | DNA/RNA helicase protein |
chr5:1512173-1514918 FORWARD LENGTH=862
Length = 862
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 12 LTASTQVAERQTIVDTFNND--TSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDR 69
L + V +R ++ F N T L S +A G G+NLT A V + D +NP ++
Sbjct: 736 LDGAMTVKKRTQVIGEFGNPELTGPVVLLASLKASGTGINLTAASRVYLFDPWWNPAVEE 795
Query: 70 QAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRK 106
QA DR HRIGQ + V + R++ + +++E V E+ ++K
Sbjct: 796 QAMDRIHRIGQKQEVKMIRMIARNSIEERVLELQQKK 832
>AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr1:3703934-3709302 REVERSE LENGTH=1269
Length = 1269
Score = 69.3 bits (168), Expect = 8e-13, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 2/107 (1%)
Query: 7 LKFYYLTASTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQ 66
+++ V R V FN + ++S +A GLN+ A V++ D+ +NP
Sbjct: 1139 IQYRRFDGKMTVPARDAAVQDFNTLPDVSVMIMSLKAASLGLNMVAACHVIMLDLWWNPT 1198
Query: 67 IDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEI--AKRKLVLDA 111
+ QA DR HRIGQT+PV + R K TV++ + + KRK+V A
Sbjct: 1199 TEDQAIDRAHRIGQTRPVKVVRFTVKDTVEDRILALQQKKRKMVASA 1245
>AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr1:3703934-3709302 REVERSE LENGTH=1226
Length = 1226
Score = 69.3 bits (168), Expect = 8e-13, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 2/107 (1%)
Query: 7 LKFYYLTASTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQ 66
+++ V R V FN + ++S +A GLN+ A V++ D+ +NP
Sbjct: 1096 IQYRRFDGKMTVPARDAAVQDFNTLPDVSVMIMSLKAASLGLNMVAACHVIMLDLWWNPT 1155
Query: 67 IDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEI--AKRKLVLDA 111
+ QA DR HRIGQT+PV + R K TV++ + + KRK+V A
Sbjct: 1156 TEDQAIDRAHRIGQTRPVKVVRFTVKDTVEDRILALQQKKRKMVASA 1202
>AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 |
chr1:1618795-1623195 REVERSE LENGTH=1410
Length = 1410
Score = 67.0 bits (162), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 11 YLTASTQVAERQTIVDTFNNDTSIFACLL-STRAGGQGLNLTGADTVVIHDMDFNPQIDR 69
Y+ + +RQT+++ FN+ S L ST+A +G++L GA V++ D+ +NP ++R
Sbjct: 1249 YMHGKLEQKQRQTLINEFNDPKSKAKVFLASTKACSEGISLVGASRVILLDVVWNPAVER 1308
Query: 70 QAEDRCHRIGQTKPVTIYRLVTKGT 94
QA R +RIGQ + V Y LV KGT
Sbjct: 1309 QAISRAYRIGQKRIVYTYHLVAKGT 1333
>AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 |
chr3:8832085-8835722 REVERSE LENGTH=1132
Length = 1132
Score = 65.9 bits (159), Expect = 9e-12, Method: Composition-based stats.
Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 20 ERQTIVDTFNN-DTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRI 78
+RQ ++D FN D+ L ST+A +G++L GA VVI D+ +NP ++ QA R RI
Sbjct: 986 DRQHMIDNFNKPDSGSKVLLASTKACSEGISLVGASRVVILDVVWNPSVESQAISRAFRI 1045
Query: 79 GQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLETMEEINEGDMP 126
GQ + V IY L+ K T + N Y K + V + NE D P
Sbjct: 1046 GQKRAVFIYHLMVKDTSEWNKYCKQSEKHRISELVFSST---NEKDKP 1090
>AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:7097638-7101182 FORWARD LENGTH=888
Length = 888
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
Query: 10 YYLTASTQVAERQTIVDTFNN--DTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQI 67
+ LT +T +R+ ++TFN+ D IF S +A G+G++L GA ++I D+ NP +
Sbjct: 743 FVLTGNTSSEQREWSMETFNSSPDAKIF--FGSIKACGEGISLVGASRILILDVPLNPSV 800
Query: 68 DRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLETME 118
RQA R R GQ K V YRL+ + +E + +K V+ E E
Sbjct: 801 TRQAIGRAFRPGQKKMVHAYRLIAGSSPEEEDHNTCFKKEVISKMWFEWNE 851
>AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 |
chr2:9179622-9182356 REVERSE LENGTH=816
Length = 816
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 57/111 (51%)
Query: 5 LTLKFYYLTASTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFN 64
L + + +T + +R+ ++ FNN S +A G+G++L GA V+I D+ N
Sbjct: 664 LGKEMFTITGDSSNEQREWSMERFNNSLEAKVFFGSIKACGEGISLVGASRVLILDVHLN 723
Query: 65 PQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLE 115
P + +QA R +R GQ + V Y+LV + +E YE RK ++ E
Sbjct: 724 PSVTQQAVARAYRPGQKRKVYAYKLVAADSPEEENYETCTRKEMMSKMWFE 774
>AT5G07810.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / HNH endonuclease
domain-containing protein | chr5:2491412-2498484 REVERSE
LENGTH=1190
Length = 1190
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%)
Query: 9 FYYLTASTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQID 68
F + +T +RQ V +F + + ++ AGG GL+ + A VV ++ P +
Sbjct: 581 FVRIDGTTLPRDRQLAVQSFQFSSEVKIAIIGVEAGGVGLDFSAAQNVVFLELPKTPSLL 640
Query: 69 RQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKL 107
QAEDR HR GQT V +Y K T+DE+ ++ +KL
Sbjct: 641 LQAEDRAHRRGQTSAVNVYIFCAKDTMDESNWQNLNKKL 679
>AT2G40770.1 | Symbols: | zinc ion binding;DNA binding;helicases;ATP
binding;nucleic acid binding | chr2:17013535-17021315
REVERSE LENGTH=1664
Length = 1664
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 31 DTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLV 90
+ SI LL + G GLNL A V++ + NP + QA R HRIGQ KP ++R +
Sbjct: 1509 EKSIQVLLLLVQHGANGLNLLEAQHVILVEPLLNPAAEAQAVGRVHRIGQEKPTLVHRFL 1568
Query: 91 TKGTVDENVYEIAKRK 106
GTV+E++Y++ + K
Sbjct: 1569 VSGTVEESIYKLNRNK 1584
>AT5G20420.1 | Symbols: CHR42 | chromatin remodeling 42 |
chr5:6899015-6903266 REVERSE LENGTH=1261
Length = 1261
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 12 LTASTQVAERQTIVDTFNNDTSIFACLL-STRAGGQGLNLTGADTVVIHDMDFNPQIDRQ 70
LT ++ ER ++D F + LL S A +G++LT A V++ D ++NP +Q
Sbjct: 1113 LTGDLELFERGRVIDKFEEPGNPSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQ 1172
Query: 71 AEDRCHRIGQTKPVTIYRLVTKGTVDENVY 100
A R R GQ K V +Y+L+++GT++E+ Y
Sbjct: 1173 AIARAFRPGQQKVVYVYQLLSRGTLEEDKY 1202
>AT3G42670.1 | Symbols: CHR38, CLSY | chromatin remodeling 38 |
chr3:14755906-14760085 REVERSE LENGTH=1256
Length = 1256
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 12 LTASTQVAERQTIVDTFNNDTSIFACLL-STRAGGQGLNLTGADTVVIHDMDFNPQIDRQ 70
LT ++ ER ++D F LL S A +G++LT A V++ D ++NP +Q
Sbjct: 1107 LTGDLELFERGRVIDKFEEPGGQSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQ 1166
Query: 71 AEDRCHRIGQTKPVTIYRLVTKGTVDENVY 100
A R R GQ K V +Y+L+++GT++E+ Y
Sbjct: 1167 AIARAFRPGQQKVVYVYQLLSRGTLEEDKY 1196