Miyakogusa Predicted Gene

Lj1g3v4237990.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4237990.1 Non Chatacterized Hit- tr|B3RMG9|B3RMG9_TRIAD
Putative uncharacterized protein OS=Trichoplax
adhaere,31.25,0.00000000003,tRNA_int_end_N2,tRNA-splicing
endonuclease, subunit Sen54, N-terminal,CUFF.32116.1
         (212 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G57360.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   200   6e-52
AT3G02370.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   164   4e-41
AT3G02370.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   153   7e-38

>AT3G57360.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G02370.2); Has 122 Blast hits to 122 proteins
           in 54 species: Archae - 0; Bacteria - 0; Metazoa - 74;
           Fungi - 4; Plants - 41; Viruses - 0; Other Eukaryotes -
           3 (source: NCBI BLink). | chr3:21225571-21226621 FORWARD
           LENGTH=254
          Length = 254

 Score =  200 bits (509), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 103/212 (48%), Positives = 140/212 (66%), Gaps = 9/212 (4%)

Query: 1   MGMAEVIEKSGKMWVTTGIVRGGKTYSSIEETLYLMELGALDLFDNSDR-SISLIEMYEK 59
           +GMAEV  K GK+W TTGI+R GKTY  IEE LYL E+G L +  N D   I L ++YEK
Sbjct: 50  LGMAEVEVKRGKLWTTTGIIRSGKTYCFIEEALYLSEIGELQILGNEDDIVIPLKDLYEK 109

Query: 60  VAGGKSGCCWELFEVYRHLKSLGYIIRRHDVAWSLKSVRSSHNPIALEATEESSQLEEMG 119
           +A  KSGC WE +EVYR+LK LGYI+ RH V+W+LK     +        EES+   E  
Sbjct: 110 IAEEKSGCSWENYEVYRYLKGLGYILGRHGVSWTLKDAARPN------GEEESACAGECP 163

Query: 120 SKVELCINKLFGELKISDVKPDFDIYLPNSRFRKSSPGDPNFLLYLSRSNPPSRAEIEAL 179
           +  +  + KL G+++I D K  FD+YLPNSRF+KSSPG+P+F+   S  +PPS+ +I+ L
Sbjct: 164 ADNDT-VTKLLGDMQICDAKAVFDVYLPNSRFKKSSPGEPSFVACFSGDSPPSKEDIKVL 222

Query: 180 ERQCDGIPLKICLVTEGRVSFFSFDKVELPVL 211
           +++    PL  C + +GR SFFSF  ++LPVL
Sbjct: 223 QKRI-AAPLTFCHIAQGRASFFSFSSIDLPVL 253


>AT3G02370.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT3G57360.1). |
           chr3:484745-485614 FORWARD LENGTH=197
          Length = 197

 Score =  164 bits (415), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 84/177 (47%), Positives = 114/177 (64%), Gaps = 6/177 (3%)

Query: 3   MAEVIEKSGKMWVTTGIVRGGKTYSSIEETLYLMELGALDLF-DNSDRSISLIEMYEKVA 61
           MAEV  K GK+W TTGI+R GKTY  IEE LYL E+G L L  D  D  ISL ++Y ++A
Sbjct: 1   MAEVEVKRGKLWTTTGIIRTGKTYCFIEEALYLSEIGELQLLGDEDDVVISLKDLYGEIA 60

Query: 62  GGKSGCCWELFEVYRHLKSLGYIIRRHDVAWSLKSVRSSHNPIALEATEESSQLEEMGSK 121
            GK GCCWE +EVYR+LK LGYI+ RH V W+ K   ++      E+   +   ++  S 
Sbjct: 61  EGKYGCCWENYEVYRYLKGLGYILGRHGVPWTTKYAVNTTPSDEDESLCAAEFFQDRDS- 119

Query: 122 VELCINKLFGELKISDVKPDFDIYLPNSRFRKSSPGDPNFLLYLSRSNPPSRAEIEA 178
               + KL  ++ I D +P FD+YLPNS+F+KSSPG+P+F+   S  +PPS+ EI+ 
Sbjct: 120 ----VTKLLSDMHICDARPVFDVYLPNSQFKKSSPGEPSFVTCFSGDSPPSKEEIKT 172


>AT3G02370.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G57360.1); Has 95 Blast hits to 95 proteins in
           40 species: Archae - 0; Bacteria - 0; Metazoa - 53;
           Fungi - 2; Plants - 39; Viruses - 0; Other Eukaryotes -
           1 (source: NCBI BLink). | chr3:484745-485338 FORWARD
           LENGTH=161
          Length = 161

 Score =  153 bits (387), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 79/165 (47%), Positives = 106/165 (64%), Gaps = 6/165 (3%)

Query: 3   MAEVIEKSGKMWVTTGIVRGGKTYSSIEETLYLMELGALDLF-DNSDRSISLIEMYEKVA 61
           MAEV  K GK+W TTGI+R GKTY  IEE LYL E+G L L  D  D  ISL ++Y ++A
Sbjct: 1   MAEVEVKRGKLWTTTGIIRTGKTYCFIEEALYLSEIGELQLLGDEDDVVISLKDLYGEIA 60

Query: 62  GGKSGCCWELFEVYRHLKSLGYIIRRHDVAWSLKSVRSSHNPIALEATEESSQLEEMGSK 121
            GK GCCWE +EVYR+LK LGYI+ RH V W+ K   ++      E+   +   ++  S 
Sbjct: 61  EGKYGCCWENYEVYRYLKGLGYILGRHGVPWTTKYAVNTTPSDEDESLCAAEFFQDRDS- 119

Query: 122 VELCINKLFGELKISDVKPDFDIYLPNSRFRKSSPGDPNFLLYLS 166
               + KL  ++ I D +P FD+YLPNS+F+KSSPG+P+F+   S
Sbjct: 120 ----VTKLLSDMHICDARPVFDVYLPNSQFKKSSPGEPSFVTCFS 160