Miyakogusa Predicted Gene

Lj1g3v4226840.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4226840.1 Non Chatacterized Hit- tr|C5Z0B3|C5Z0B3_SORBI
Putative uncharacterized protein Sb09g024330 OS=Sorghu,46.77,4e-18,
,NODE_41354_length_990_cov_94.516159.path1.1
         (124 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G04000.1 | Symbols:  | unknown protein; Has 1807 Blast hits t...   106   5e-24
AT5G04000.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   105   5e-24

>AT5G04000.1 | Symbols:  | unknown protein; Has 1807 Blast hits to
           1807 proteins in 277 species: Archae - 0; Bacteria - 0;
           Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
           Other Eukaryotes - 339 (source: NCBI BLink). |
           chr5:1079305-1079732 REVERSE LENGTH=116
          Length = 116

 Score =  106 bits (264), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/63 (79%), Positives = 55/63 (87%)

Query: 55  GDVNMEVPITPDDVIRAGGFGARDDIGSFLPVASDSTDFEASIRDARDYEEPQGEVSRPG 114
           G+VNME  I+ +DVIRAGGFGA+DDIGSFLPVASDSTDFE SIR ARDYEE Q EV RPG
Sbjct: 51  GEVNMEASISAEDVIRAGGFGAKDDIGSFLPVASDSTDFEESIRSARDYEEAQPEVQRPG 110

Query: 115 LGW 117
           LG+
Sbjct: 111 LGY 113


>AT5G04000.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: inflorescence
           meristem, hypocotyl. | chr5:1079305-1079732 REVERSE
           LENGTH=118
          Length = 118

 Score =  105 bits (263), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/63 (79%), Positives = 55/63 (87%)

Query: 55  GDVNMEVPITPDDVIRAGGFGARDDIGSFLPVASDSTDFEASIRDARDYEEPQGEVSRPG 114
           G+VNME  I+ +DVIRAGGFGA+DDIGSFLPVASDSTDFE SIR ARDYEE Q EV RPG
Sbjct: 53  GEVNMEASISAEDVIRAGGFGAKDDIGSFLPVASDSTDFEESIRSARDYEEAQPEVQRPG 112

Query: 115 LGW 117
           LG+
Sbjct: 113 LGY 115