Miyakogusa Predicted Gene

Lj1g3v4226690.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4226690.1 tr|G2XMG9|G2XMG9_ORYBR Hypothetical_protein
OS=Oryza brachyantha GN=Ob12g0074O16_11 PE=4
SV=1,50.56,1e-18,seg,NULL,CUFF.32075.1
         (341 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03990.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   139   4e-33
AT3G51940.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   113   2e-25

>AT5G03990.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G51940.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:1075957-1077358 FORWARD LENGTH=302
          Length = 302

 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 81/103 (78%), Gaps = 3/103 (2%)

Query: 29  KPPLPQSNLHSTVPSWEKKFCYSAG-IPWRKLIECKKYMDLHSNVLHWDDSAGKEAFDNA 87
           KPPL  +N   +VP+WEK FC   G +PW K++E K++M ++  V+ WDDSAG++AF NA
Sbjct: 31  KPPL--ANCKISVPAWEKDFCAVIGSVPWWKVVEAKRFMHIYDRVVQWDDSAGEDAFKNA 88

Query: 88  KKRFWAKINGLPCGISLPDPDIYIDDVDWNSSVDPELILDLER 130
           K RFWA+INGL C +SLPDPD+YIDDVDW++ VD ELILDLER
Sbjct: 89  KSRFWAEINGLTCDLSLPDPDVYIDDVDWDAEVDNELILDLER 131


>AT3G51940.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G03990.1); Has 215 Blast hits to 164 proteins
           in 38 species: Archae - 0; Bacteria - 35; Metazoa - 16;
           Fungi - 18; Plants - 121; Viruses - 0; Other Eukaryotes
           - 25 (source: NCBI BLink). | chr3:19273708-19275157
           REVERSE LENGTH=453
          Length = 453

 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 49/92 (53%), Positives = 71/92 (77%), Gaps = 2/92 (2%)

Query: 41  VPSWEKKFCYSAG-IPWRKLIECKKYMDLHS-NVLHWDDSAGKEAFDNAKKRFWAKINGL 98
           +P WEK+FC   G +PW+K++E K +   ++ NV+ WDDSA ++ F N KKRFW+++NGL
Sbjct: 33  IPVWEKRFCEVIGSVPWQKVVEAKDFKSWYNGNVITWDDSACEDTFHNEKKRFWSQVNGL 92

Query: 99  PCGISLPDPDIYIDDVDWNSSVDPELILDLER 130
            C +S+PDPD+YI +VDW++ VDPELI DLE+
Sbjct: 93  HCDVSIPDPDLYISEVDWDTFVDPELIRDLEK 124