Miyakogusa Predicted Gene

Lj1g3v4170190.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4170190.1 Non Chatacterized Hit- tr|I3S6C0|I3S6C0_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,100,0,Response_reg,Signal transduction response regulator,
receiver domain; RESPONSE_REGULATORY,Signal tra,CUFF.32032.1
         (239 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G57040.1 | Symbols: ARR9, ATRR4 | response regulator 9 | chr3...   231   5e-61
AT2G41310.1 | Symbols: ATRR3, ARR8, RR3 | response regulator 3 |...   224   3e-59
AT1G10470.1 | Symbols: ARR4, MEE7, ATRR1, IBC7 | response regula...   172   2e-43
AT1G59940.1 | Symbols: ARR3 | response regulator 3 | chr1:220658...   171   3e-43
AT3G48100.1 | Symbols: ARR5, ATRR2, IBC6, RR5 | response regulat...   165   2e-41
AT3G56380.1 | Symbols: ARR17, RR17 | response regulator 17 | chr...   162   1e-40
AT1G19050.1 | Symbols: ARR7 | response regulator 7 | chr1:657791...   162   2e-40
AT1G74890.1 | Symbols: ARR15 | response regulator 15 | chr1:2813...   161   3e-40
AT5G62920.1 | Symbols: ARR6 | response regulator 6 | chr5:252527...   161   4e-40
AT2G40670.1 | Symbols: ARR16, RR16 | response regulator 16 | chr...   156   1e-38
AT2G40670.2 | Symbols: RR16 | response regulator 16 | chr2:16970...   152   3e-37
AT2G07440.1 | Symbols:  | two-component responsive regulator-rel...    89   3e-18
AT5G24470.1 | Symbols: APRR5, PRR5 | pseudo-response regulator 5...    73   2e-13
AT5G02810.1 | Symbols: PRR7, APRR7 | pseudo-response regulator 7...    70   1e-12
AT5G60100.2 | Symbols: PRR3 | pseudo-response regulator 3 | chr5...    69   2e-12
AT2G46790.1 | Symbols: APRR9, PRR9, TL1 | pseudo-response regula...    69   3e-12
AT5G60100.3 | Symbols: PRR3 | pseudo-response regulator 3 | chr5...    69   3e-12
AT5G60100.1 | Symbols: APRR3, PRR3 | pseudo-response regulator 3...    69   3e-12
AT2G25180.1 | Symbols: ARR12, RR12 | response regulator 12 | chr...    67   8e-12
AT1G67710.1 | Symbols: ARR11 | response regulator 11 | chr1:2537...    67   1e-11
AT5G07210.1 | Symbols: ARR21, RR21 | response regulator 21 | chr...    63   2e-10
AT4G31920.1 | Symbols: ARR10, RR10 | response regulator 10 | chr...    62   3e-10
AT2G27070.1 | Symbols: ARR13, RR13 | response regulator 13 | chr...    62   4e-10
AT1G49190.1 | Symbols: ARR19, RR19 | response regulator 19 | chr...    61   6e-10
AT1G49190.2 | Symbols: RR19 | response regulator 19 | chr1:18191...    61   6e-10
AT3G16857.1 | Symbols: ARR1, RR1 | response regulator 1 | chr3:5...    57   1e-08
AT5G61380.1 | Symbols: TOC1, APRR1, PRR1, AtTOC1 | CCT motif -co...    57   1e-08
AT3G16857.2 | Symbols: ARR1, RR1 | response regulator 1 | chr3:5...    57   1e-08
AT2G01760.1 | Symbols: ARR14, RR14 | response regulator 14 | chr...    55   5e-08
AT4G16110.1 | Symbols: ARR2, RR2 | response regulator 2 | chr4:9...    54   7e-08
AT3G62670.1 | Symbols: ARR20, MEE41, RR20 | response regulator 2...    47   1e-05

>AT3G57040.1 | Symbols: ARR9, ATRR4 | response regulator 9 |
           chr3:21110059-21111228 FORWARD LENGTH=234
          Length = 234

 Score =  231 bits (588), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 134/244 (54%), Positives = 157/244 (64%), Gaps = 15/244 (6%)

Query: 1   MGMAAAESQYHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHXXXXXXXX 60
           MGMAA ESQ+HVLAVDDS+ DRKLIERLL+ SS QVTTVDSGSKALEFLGL         
Sbjct: 1   MGMAA-ESQFHVLAVDDSLFDRKLIERLLQKSSCQVTTVDSGSKALEFLGLRQSTDSNDP 59

Query: 61  XXXXXX-XXHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRIN 119
                    HQ VEVNL+ITDYCMPGMTGYDLLKK+KESS+ R+IPVVIMSSENVP+RI+
Sbjct: 60  NAFSKAPVNHQVVEVNLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARIS 119

Query: 120 RCLEEGAEEFFLKPVRQSDLVRLKSHIKKTNLK--KIQNQDVADKLE--IPEVXXXXXXX 175
           RCLEEGAEEFFLKPVR +DL +LK H+ KT LK  K++  +   K+E  +P         
Sbjct: 120 RCLEEGAEEFFLKPVRLADLNKLKPHMMKTKLKNQKLEEIETTSKVENGVPTAVADPEIK 179

Query: 176 XXXXXXXXXXAPKFQYLQPESEVDXXXXXXXXXXXXKRKTMEQANSTPETDRTRPRYSGI 235
                       +   L  + E              KRK++E+  S   TDR RPR+ GI
Sbjct: 180 DSTNIEIEILPLQQDLLLVQQE------EQTLSINNKRKSVEEGIS---TDRARPRFDGI 230

Query: 236 ATVV 239
           AT V
Sbjct: 231 ATAV 234


>AT2G41310.1 | Symbols: ATRR3, ARR8, RR3 | response regulator 3 |
           chr2:17222280-17223536 FORWARD LENGTH=225
          Length = 225

 Score =  224 bits (571), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 126/233 (54%), Positives = 151/233 (64%), Gaps = 13/233 (5%)

Query: 7   ESQYHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHXXXXXXXXXXXXXX 66
           ES++HVLAVDDS+ DRK+IERLL+ SS QVTTVDSGSKALEFLGL               
Sbjct: 6   ESKFHVLAVDDSLFDRKMIERLLQKSSCQVTTVDSGSKALEFLGLRVDDNDPNALSTSPQ 65

Query: 67  XXHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGA 126
             HQEVE+NL+ITDYCMPGMTGYDLLKK+KES++ R+IPVVIMSSENVP+RI+RCLEEGA
Sbjct: 66  I-HQEVEINLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISRCLEEGA 124

Query: 127 EEFFLKPVRQSDLVRLKSHIKKTNLKKIQNQDVADKLEIPEVXXXXXXXXXXXXXXXXXA 186
           EEFFLKPV+ +DL +LK H+ KT LKK   + VA  +E   V                  
Sbjct: 125 EEFFLKPVKLADLTKLKPHMMKTKLKKESEKPVA--IEEIVVSKPEIEEEEEESSVIEIL 182

Query: 187 PKFQYLQPESEVDXXXXXXXXXXXXKRKTMEQANSTPETDRTRPRYSGIATVV 239
           P  Q ++ E                KRK ME+  ST   DR+RP+Y+ I T V
Sbjct: 183 PLHQEIESEQ-------LEPMLSSNKRKAMEEVVST---DRSRPKYNDITTSV 225


>AT1G10470.1 | Symbols: ARR4, MEE7, ATRR1, IBC7 | response regulator
           4 | chr1:3442624-3443759 REVERSE LENGTH=259
          Length = 259

 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 91/172 (52%), Positives = 120/172 (69%), Gaps = 20/172 (11%)

Query: 2   GMAAAES------QYHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHXXX 55
           G+   ES      + HVLAVDDS++DR +IERLL+ +S +VT VDSG +ALEFLGL    
Sbjct: 20  GIGGIESAPLDLDEVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDNEK 79

Query: 56  XXXXXXXXXXXXXHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVP 115
                           ++V+L+ITDYCMPGMTGY+LLKKIKESS+ R +PVVIMSSENV 
Sbjct: 80  ASAE---------FDRLKVDLIITDYCMPGMTGYELLKKIKESSNFREVPVVIMSSENVL 130

Query: 116 SRINRCLEEGAEEFFLKPVRQSDLVRLKSHIKKTNLKKIQNQDVADKLEIPE 167
           +RI+RCLEEGA++F LKPV+ +D+ RL+SH+ K    K+ N    +K ++PE
Sbjct: 131 TRIDRCLEEGAQDFLLKPVKLADVKRLRSHLTKD--VKLSN---GNKRKLPE 177


>AT1G59940.1 | Symbols: ARR3 | response regulator 3 |
           chr1:22065894-22066895 REVERSE LENGTH=231
          Length = 231

 Score =  171 bits (434), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 82/140 (58%), Positives = 107/140 (76%), Gaps = 9/140 (6%)

Query: 9   QYHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHXXXXXXXXXXXXXXXX 68
           Q HVLAVDDS++DR +IERLL+ +S +VT VDSG +ALEFLGL                 
Sbjct: 32  QVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDDDKAAVE--------- 82

Query: 69  HQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAEE 128
              ++V+L+ITDYCMPGMTGY+LLKKIKES+S + +PVVIMSSENV +RI+RCLEEGAE+
Sbjct: 83  FDRLKVDLIITDYCMPGMTGYELLKKIKESTSFKEVPVVIMSSENVMTRIDRCLEEGAED 142

Query: 129 FFLKPVRQSDLVRLKSHIKK 148
           F LKPV+ +D+ RL+S++ +
Sbjct: 143 FLLKPVKLADVKRLRSYLTR 162


>AT3G48100.1 | Symbols: ARR5, ATRR2, IBC6, RR5 | response regulator
           5 | chr3:17759112-17760740 REVERSE LENGTH=184
          Length = 184

 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/152 (53%), Positives = 109/152 (71%), Gaps = 8/152 (5%)

Query: 5   AAESQYHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHXXXXXXXXXXXX 64
           A+    HVLAVDDS++DRK IERLL+ SS +VT VDS ++AL++LGL             
Sbjct: 20  ASPKLLHVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDGENNSSVG---- 75

Query: 65  XXXXHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEE 124
                +++++NL++TDY MPGMTGY+LLKKIKESS+ R IPVVIMSSEN+  RI+RCLEE
Sbjct: 76  ----FEDLKINLIMTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILPRIDRCLEE 131

Query: 125 GAEEFFLKPVRQSDLVRLKSHIKKTNLKKIQN 156
           GAE+F LKPV+ +D+ RL+  + K   +  +N
Sbjct: 132 GAEDFLLKPVKLADVKRLRDSLMKAEERAFKN 163


>AT3G56380.1 | Symbols: ARR17, RR17 | response regulator 17 |
           chr3:20905480-20906368 FORWARD LENGTH=153
          Length = 153

 Score =  162 bits (411), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 76/144 (52%), Positives = 108/144 (75%), Gaps = 8/144 (5%)

Query: 3   MAAAESQYHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHXXXXXXXXXX 62
           +++ E + HVLAVDD++IDRKL+ER+LK SS +VTT ++G +ALE+LGL           
Sbjct: 13  LSSMEEELHVLAVDDNLIDRKLVERILKISSCKVTTAENGLRALEYLGLGDPQQTDSLTN 72

Query: 63  XXXXXXHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCL 122
                    ++VNL+ITDYCMPGMTG++LLKK+KESS+L+ +PVVI+SSEN+P+RIN+CL
Sbjct: 73  V--------MKVNLIITDYCMPGMTGFELLKKVKESSNLKEVPVVILSSENIPTRINKCL 124

Query: 123 EEGAEEFFLKPVRQSDLVRLKSHI 146
             GA+ F  KP++ SD+ +LK H+
Sbjct: 125 ASGAQMFMQKPLKLSDVEKLKCHL 148


>AT1G19050.1 | Symbols: ARR7 | response regulator 7 |
           chr1:6577919-6579078 REVERSE LENGTH=206
          Length = 206

 Score =  162 bits (410), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/138 (57%), Positives = 105/138 (76%), Gaps = 9/138 (6%)

Query: 9   QYHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHXXXXXXXXXXXXXXXX 68
           + HVLAVDDSI+DRK+IERLL+ SS +VTTV+SG++AL++LGL                 
Sbjct: 23  ELHVLAVDDSIVDRKVIERLLRISSCKVTTVESGTRALQYLGLDGGKGASNL-------- 74

Query: 69  HQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAEE 128
            ++++VNL++TDY MPG++GYDLLKKIKESS+ R +PVVIMSSEN+  RI  CL+EGAEE
Sbjct: 75  -KDLKVNLIVTDYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPRIQECLKEGAEE 133

Query: 129 FFLKPVRQSDLVRLKSHI 146
           F LKPV+ +D+ R+K  I
Sbjct: 134 FLLKPVKLADVKRIKQLI 151


>AT1G74890.1 | Symbols: ARR15 | response regulator 15 |
           chr1:28131590-28132710 REVERSE LENGTH=206
          Length = 206

 Score =  161 bits (408), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 80/138 (57%), Positives = 105/138 (76%), Gaps = 9/138 (6%)

Query: 9   QYHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHXXXXXXXXXXXXXXXX 68
           + HVLAVDDS +DRK+IERLLK S+ +VTTV+SG++AL++LGL                 
Sbjct: 17  ELHVLAVDDSFVDRKVIERLLKISACKVTTVESGTRALQYLGLDGDNGSSGL-------- 68

Query: 69  HQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAEE 128
            ++++VNL++TDY MPG+TGY+LLKKIKESS+LR IPVVIMSSEN+  RI +C+ EGAEE
Sbjct: 69  -KDLKVNLIVTDYSMPGLTGYELLKKIKESSALREIPVVIMSSENIQPRIEQCMIEGAEE 127

Query: 129 FFLKPVRQSDLVRLKSHI 146
           F LKPV+ +D+ RLK  I
Sbjct: 128 FLLKPVKLADVKRLKELI 145


>AT5G62920.1 | Symbols: ARR6 | response regulator 6 |
           chr5:25252745-25254158 REVERSE LENGTH=186
          Length = 186

 Score =  161 bits (408), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 80/139 (57%), Positives = 103/139 (74%), Gaps = 9/139 (6%)

Query: 11  HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHXXXXXXXXXXXXXXXXHQ 70
           HVLAVDDS +DRK IERLL+ SS +VT VDS ++AL++LGL                  +
Sbjct: 26  HVLAVDDSHVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDVEEKSVG---------FE 76

Query: 71  EVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAEEFF 130
           +++VNL++TDY MPGMTGY+LLKKIKESS+ R +PVVIMSSEN+  RI+RCLEEGAE+F 
Sbjct: 77  DLKVNLIMTDYSMPGMTGYELLKKIKESSAFREVPVVIMSSENILPRIDRCLEEGAEDFL 136

Query: 131 LKPVRQSDLVRLKSHIKKT 149
           LKPV+ SD+ RL+  + K 
Sbjct: 137 LKPVKLSDVKRLRDSLMKV 155


>AT2G40670.1 | Symbols: ARR16, RR16 | response regulator 16 |
           chr2:16970258-16971120 FORWARD LENGTH=164
          Length = 164

 Score =  156 bits (395), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 74/140 (52%), Positives = 103/140 (73%), Gaps = 6/140 (4%)

Query: 7   ESQYHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHXXXXXXXXXXXXXX 66
           + + HVLAVDD++IDRKL+ERLLK S  +VTT ++  +ALE+LGL               
Sbjct: 26  DEELHVLAVDDNLIDRKLVERLLKISCCKVTTAENALRALEYLGLGDQNQHIDALTCNV- 84

Query: 67  XXHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGA 126
                ++V+L+ITDYCMPGMTG++LLKK+KESS+LR +PVVIMSSEN+P+RIN+CL  GA
Sbjct: 85  -----MKVSLIITDYCMPGMTGFELLKKVKESSNLREVPVVIMSSENIPTRINKCLASGA 139

Query: 127 EEFFLKPVRQSDLVRLKSHI 146
           + F  KP++ +D+ +LK H+
Sbjct: 140 QMFMQKPLKLADVEKLKCHL 159


>AT2G40670.2 | Symbols: RR16 | response regulator 16 |
           chr2:16970258-16971120 FORWARD LENGTH=165
          Length = 165

 Score =  152 bits (383), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/141 (52%), Positives = 103/141 (73%), Gaps = 7/141 (4%)

Query: 7   ESQYHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHXXXXXXXXXXXXXX 66
           + + HVLAVDD++IDRKL+ERLLK S  +VTT ++  +ALE+LGL               
Sbjct: 26  DEELHVLAVDDNLIDRKLVERLLKISCCKVTTAENALRALEYLGLGDQNQHIDALTCNV- 84

Query: 67  XXHQEVEVNLVITDYCMPGMTGYDLLKKIK-ESSSLRNIPVVIMSSENVPSRINRCLEEG 125
                ++V+L+ITDYCMPGMTG++LLKK+K ESS+LR +PVVIMSSEN+P+RIN+CL  G
Sbjct: 85  -----MKVSLIITDYCMPGMTGFELLKKVKQESSNLREVPVVIMSSENIPTRINKCLASG 139

Query: 126 AEEFFLKPVRQSDLVRLKSHI 146
           A+ F  KP++ +D+ +LK H+
Sbjct: 140 AQMFMQKPLKLADVEKLKCHL 160


>AT2G07440.1 | Symbols:  | two-component responsive
           regulator-related / response regulator protein-related |
           chr2:3093821-3094750 REVERSE LENGTH=136
          Length = 136

 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/146 (41%), Positives = 79/146 (54%), Gaps = 21/146 (14%)

Query: 97  ESSSLRNIPVVIMSSENVPSRINRCLEEGAEEFFLKPVRQSDLVRLKSHIKKTNLKKIQN 156
           ES++ R+I VVIMSSENVP+RI+RCLE+GAEEFFLKPV+  D  +LK H+ KT LKK   
Sbjct: 9   ESAAFRSIHVVIMSSENVPTRISRCLEKGAEEFFLKPVKLVDHTKLKPHMMKTKLKKESE 68

Query: 157 QDVADK---LEIPEVXXXXXXXXXXXXXXXXXAPKFQYLQPESEVDXXXXXXXXXXXXKR 213
           + VA +   +  PE+                  P  Q ++ E                KR
Sbjct: 69  KPVAIEEIVVSKPEIEEESLVIDIL--------PLHQEVESEQ-------LEPMLSSNKR 113

Query: 214 KTMEQANSTPETDRTRPRYSGIATVV 239
           K ME+  S   TDR RP+Y+ I T V
Sbjct: 114 KAMEEVIS---TDRPRPKYNDITTSV 136


>AT5G24470.1 | Symbols: APRR5, PRR5 | pseudo-response regulator 5 |
           chr5:8356204-8358873 REVERSE LENGTH=667
          Length = 667

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 75/137 (54%), Gaps = 20/137 (14%)

Query: 12  VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHXXXXXXXXXXXXXXXXHQE 71
           ++  DDS   R++I  LL+  SY+V  V  G KA E L                    + 
Sbjct: 163 LVEADDST--RQIIAALLRKCSYRVAAVPDGLKAWEML------------------KGKP 202

Query: 72  VEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAEEFFL 131
             V+L++T+  +P ++GY LL  I E    +NIPV++MS+++  + + +C+ +GA ++ +
Sbjct: 203 ESVDLILTEVDLPSISGYALLTLIMEHDICKNIPVIMMSTQDSVNTVYKCMLKGAADYLV 262

Query: 132 KPVRQSDLVRLKSHIKK 148
           KP+R+++L  L  H+ +
Sbjct: 263 KPLRRNELRNLWQHVWR 279


>AT5G02810.1 | Symbols: PRR7, APRR7 | pseudo-response regulator 7 |
           chr5:638283-641461 REVERSE LENGTH=727
          Length = 727

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 24/140 (17%)

Query: 12  VLAVDDSIIDRKLIERLLKTSSYQVTTVDSG---SKALEFLGLHXXXXXXXXXXXXXXXX 68
           VL V++    R ++  LL+  SY+V    +G    K LE L  H                
Sbjct: 80  VLLVENDDCTRYIVTALLRNCSYEVVEASNGIQAWKVLEDLNNH---------------- 123

Query: 69  HQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAEE 128
                +++V+T+  MP ++G  LL KI    S RNIPV++MSS +    + +CL +GA +
Sbjct: 124 -----IDIVLTEVIMPYLSGIGLLCKILNHKSRRNIPVIMMSSHDSMGLVFKCLSKGAVD 178

Query: 129 FFLKPVRQSDLVRLKSHIKK 148
           F +KP+R+++L  L  H+ +
Sbjct: 179 FLVKPIRKNELKILWQHVWR 198


>AT5G60100.2 | Symbols: PRR3 | pseudo-response regulator 3 |
           chr5:24198215-24200502 REVERSE LENGTH=522
          Length = 522

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 18/135 (13%)

Query: 12  VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHXXXXXXXXXXXXXXXXHQE 71
           VL V++    R ++  LLK  SY+VT V    +A   L                    ++
Sbjct: 66  VLLVENDDSTRHIVTALLKNCSYEVTAVPDVLEAWRIL------------------EDEK 107

Query: 72  VEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAEEFFL 131
             ++LV+T+  MP  +G  LL KI    +L+NIPV++MSS +    + +CL  GA +F +
Sbjct: 108 SCIDLVLTEVDMPVHSGTGLLSKIMSHKTLKNIPVIMMSSHDSMVLVFKCLSNGAVDFLV 167

Query: 132 KPVRQSDLVRLKSHI 146
           KP+R+++L  L  H+
Sbjct: 168 KPIRKNELKNLWQHV 182


>AT2G46790.1 | Symbols: APRR9, PRR9, TL1 | pseudo-response regulator
           9 | chr2:19232874-19234901 FORWARD LENGTH=468
          Length = 468

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 70/135 (51%), Gaps = 18/135 (13%)

Query: 12  VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHXXXXXXXXXXXXXXXXHQE 71
           VL V+     R++I  LL+   Y+V  V  G  A E L                    + 
Sbjct: 39  VLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVL------------------KEKS 80

Query: 72  VEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAEEFFL 131
             ++L++T+  +P ++G+ LL  + E  + +NIPV++MSS++    + +C+  GA ++ +
Sbjct: 81  HNIDLILTELDLPSISGFALLALVMEHEACKNIPVIMMSSQDSIKMVLKCMLRGAADYLI 140

Query: 132 KPVRQSDLVRLKSHI 146
           KP+R+++L  L  H+
Sbjct: 141 KPMRKNELKNLWQHV 155


>AT5G60100.3 | Symbols: PRR3 | pseudo-response regulator 3 |
           chr5:24198215-24200502 REVERSE LENGTH=495
          Length = 495

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 18/135 (13%)

Query: 12  VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHXXXXXXXXXXXXXXXXHQE 71
           VL V++    R ++  LLK  SY+VT V    +A   L                    ++
Sbjct: 66  VLLVENDDSTRHIVTALLKNCSYEVTAVPDVLEAWRIL------------------EDEK 107

Query: 72  VEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAEEFFL 131
             ++LV+T+  MP  +G  LL KI    +L+NIPV++MSS +    + +CL  GA +F +
Sbjct: 108 SCIDLVLTEVDMPVHSGTGLLSKIMSHKTLKNIPVIMMSSHDSMVLVFKCLSNGAVDFLV 167

Query: 132 KPVRQSDLVRLKSHI 146
           KP+R+++L  L  H+
Sbjct: 168 KPIRKNELKNLWQHV 182


>AT5G60100.1 | Symbols: APRR3, PRR3 | pseudo-response regulator 3 |
           chr5:24198215-24200502 REVERSE LENGTH=495
          Length = 495

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 18/135 (13%)

Query: 12  VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHXXXXXXXXXXXXXXXXHQE 71
           VL V++    R ++  LLK  SY+VT V    +A   L                    ++
Sbjct: 66  VLLVENDDSTRHIVTALLKNCSYEVTAVPDVLEAWRIL------------------EDEK 107

Query: 72  VEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAEEFFL 131
             ++LV+T+  MP  +G  LL KI    +L+NIPV++MSS +    + +CL  GA +F +
Sbjct: 108 SCIDLVLTEVDMPVHSGTGLLSKIMSHKTLKNIPVIMMSSHDSMVLVFKCLSNGAVDFLV 167

Query: 132 KPVRQSDLVRLKSHI 146
           KP+R+++L  L  H+
Sbjct: 168 KPIRKNELKNLWQHV 182


>AT2G25180.1 | Symbols: ARR12, RR12 | response regulator 12 |
           chr2:10724490-10726961 REVERSE LENGTH=596
          Length = 596

 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 21/142 (14%)

Query: 12  VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHXXXXXXXXXXXXXXXXHQE 71
           VLAVDD     K++E LL+   Y VTT +   KALE L                     +
Sbjct: 19  VLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELL------------------RENK 60

Query: 72  VEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAEEFFL 131
            + +LVI+D  MP M G+ LL+ +     L   PV+++S+ + P  + + +  GA ++ L
Sbjct: 61  NKFDLVISDVDMPDMDGFKLLELVGLEMDL---PVIMLSAHSDPKYVMKGVTHGACDYLL 117

Query: 132 KPVRQSDLVRLKSHIKKTNLKK 153
           KPVR  +L  +  H+ ++   K
Sbjct: 118 KPVRIEELKNIWQHVVRSRFDK 139


>AT1G67710.1 | Symbols: ARR11 | response regulator 11 |
           chr1:25376994-25378905 REVERSE LENGTH=521
          Length = 521

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 76/145 (52%), Gaps = 21/145 (14%)

Query: 12  VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHXXXXXXXXXXXXXXXXHQE 71
           VL VDD     K++E++LK  SY+VTT     +AL  L                    ++
Sbjct: 13  VLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLL------------------RERK 54

Query: 72  VEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAEEFFL 131
              ++VI+D  MP M G+ LL+ +       ++PV++MS +   SR+ + ++ GA ++ L
Sbjct: 55  DGYDIVISDVNMPDMDGFKLLEHVGLE---LDLPVIMMSVDGETSRVMKGVQHGACDYLL 111

Query: 132 KPVRQSDLVRLKSHIKKTNLKKIQN 156
           KP+R  +L  +  H+ +  L+++++
Sbjct: 112 KPIRMKELKIIWQHVLRKKLQEVRD 136


>AT5G07210.1 | Symbols: ARR21, RR21 | response regulator 21 |
           chr5:2252237-2256018 FORWARD LENGTH=621
          Length = 621

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 38/156 (24%)

Query: 3   MAAAESQYH--------VLAVDDSIIDRKLIERLLKTSSYQ--------VTTVDSGSKAL 46
           MA+A+S Y+        V+ VDD  +   ++ R+L+ S Y+        V  VD   KAL
Sbjct: 1   MASAQSFYNQSSVLKINVMVVDDDHVFLDIMSRMLQHSKYRDPSVMEIAVIAVDDPKKAL 60

Query: 47  EFLGLHXXXXXXXXXXXXXXXXHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPV 106
             L +                  Q   ++L+ITDY MPGM G  L K+I +     N+PV
Sbjct: 61  STLKI------------------QRDNIDLIITDYYMPGMNGLQLKKQITQ--EFGNLPV 100

Query: 107 VIMSSENVPSRINRCLEEGAEEFFLKPVRQSDLVRL 142
           ++MSS+   ++    L  GA  F  KP+  +DL ++
Sbjct: 101 LVMSSDT--NKEEESLSCGAMGFIPKPIHPTDLTKI 134


>AT4G31920.1 | Symbols: ARR10, RR10 | response regulator 10 |
           chr4:15444290-15446766 REVERSE LENGTH=552
          Length = 552

 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 21/135 (15%)

Query: 12  VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHXXXXXXXXXXXXXXXXHQE 71
           VLAVDD     ++++ LL+   Y VTT +    ALE L                     +
Sbjct: 19  VLAVDDDQTCLRILQTLLQRCQYHVTTTNQAQTALELL------------------RENK 60

Query: 72  VEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAEEFFL 131
            + +LVI+D  MP M G+ LL+ +     L   PV+++S+ + P  + + ++ GA ++ L
Sbjct: 61  NKFDLVISDVDMPDMDGFKLLELVGLEMDL---PVIMLSAHSDPKYVMKGVKHGACDYLL 117

Query: 132 KPVRQSDLVRLKSHI 146
           KPVR  +L  +  H+
Sbjct: 118 KPVRIEELKNIWQHV 132


>AT2G27070.1 | Symbols: ARR13, RR13 | response regulator 13 |
           chr2:11555781-11560215 REVERSE LENGTH=575
          Length = 575

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 85/182 (46%), Gaps = 40/182 (21%)

Query: 3   MAAAESQYH--------VLAVDDSIIDRKLIERLLKTSSYQ---VTTVDSGSKALEFLGL 51
           MA A+S Y+        V+ VDD+ +   +  R+L+ S Y+   V  VD   KAL  L  
Sbjct: 1   MAFAQSVYNQSSVLKINVMVVDDNRVFLDIWSRMLEKSKYREITVIAVDYPKKALSTL-- 58

Query: 52  HXXXXXXXXXXXXXXXXHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSS 111
                            +Q   ++L+ITDY MPGM G  L K+I +     N+ V++MSS
Sbjct: 59  ----------------KNQRDNIDLIITDYYMPGMNGLQLKKQITQ--EFGNLSVLVMSS 100

Query: 112 ENVPSRINRCLEEGAEEFFLKPVRQSDLVRLKSHI------KKTNLKKIQNQDVADKLEI 165
           +  P++    L  GA  F  KP+  +DL ++           K+ L   QNQ  A+ + +
Sbjct: 101 D--PNKEEESLSCGAMGFIPKPIAPTDLPKIYQFALTYKRNGKSTLSTEQNQKDAN-VSV 157

Query: 166 PE 167
           P+
Sbjct: 158 PQ 159


>AT1G49190.1 | Symbols: ARR19, RR19 | response regulator 19 |
           chr1:18191342-18193598 FORWARD LENGTH=608
          Length = 608

 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 21/141 (14%)

Query: 11  HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHXXXXXXXXXXXXXXXXHQ 70
           +VL VD +      +++++K  +YQV+      KAL FL                   H 
Sbjct: 35  NVLVVDTNFTTLLNMKQIMKQYAYQVSIETDAEKALAFL---------------TSCKH- 78

Query: 71  EVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAEEFF 130
             E+N+VI D+ MPG+ G   LK I   +S  ++PVVIMS +N    + +    GA ++ 
Sbjct: 79  --EINIVIWDFHMPGIDGLQALKSI---TSKLDLPVVIMSDDNQTESVMKATFYGACDYV 133

Query: 131 LKPVRQSDLVRLKSHIKKTNL 151
           +KPV++  +  +  HI +  L
Sbjct: 134 VKPVKEEVMANIWQHIVRKRL 154


>AT1G49190.2 | Symbols: RR19 | response regulator 19 |
           chr1:18191342-18193598 FORWARD LENGTH=622
          Length = 622

 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 21/141 (14%)

Query: 11  HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHXXXXXXXXXXXXXXXXHQ 70
           +VL VD +      +++++K  +YQV+      KAL FL                   H 
Sbjct: 35  NVLVVDTNFTTLLNMKQIMKQYAYQVSIETDAEKALAFL---------------TSCKH- 78

Query: 71  EVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAEEFF 130
             E+N+VI D+ MPG+ G   LK I   +S  ++PVVIMS +N    + +    GA ++ 
Sbjct: 79  --EINIVIWDFHMPGIDGLQALKSI---TSKLDLPVVIMSDDNQTESVMKATFYGACDYV 133

Query: 131 LKPVRQSDLVRLKSHIKKTNL 151
           +KPV++  +  +  HI +  L
Sbjct: 134 VKPVKEEVMANIWQHIVRKRL 154


>AT3G16857.1 | Symbols: ARR1, RR1 | response regulator 1 |
           chr3:5756113-5758853 FORWARD LENGTH=669
          Length = 669

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 21/139 (15%)

Query: 8   SQYHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHXXXXXXXXXXXXXXX 67
           S   VL VDD      ++ER+L+T  Y+VT  +    AL  L                  
Sbjct: 35  SGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLL------------------ 76

Query: 68  XHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAE 127
              +   ++VI+D  MP M G+ LL+ +     L   PV++MS+++  S + + +  GA 
Sbjct: 77  RKNKHGFDIVISDVHMPDMDGFKLLEHVGLEMDL---PVIMMSADDSKSVVLKGVTHGAV 133

Query: 128 EFFLKPVRQSDLVRLKSHI 146
           ++ +KPVR   L  +  H+
Sbjct: 134 DYLIKPVRMEALKNIWQHV 152


>AT5G61380.1 | Symbols: TOC1, APRR1, PRR1, AtTOC1 | CCT motif
           -containing response regulator protein |
           chr5:24675540-24678176 FORWARD LENGTH=618
          Length = 618

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 69/141 (48%), Gaps = 18/141 (12%)

Query: 8   SQYHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHXXXXXXXXXXXXXXX 67
           S+  +L  D+       +  LL   SYQVT V S  + ++ L                  
Sbjct: 17  SRVRILLCDNDSTSLGEVFTLLSECSYQVTAVKSARQVIDALNA---------------- 60

Query: 68  XHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAE 127
             +  ++++++ +  +P   G  +L+ I     LR IPV++MS ++    + +CL+ GA 
Sbjct: 61  --EGPDIDIILAEIDLPMAKGMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGAA 118

Query: 128 EFFLKPVRQSDLVRLKSHIKK 148
           ++ +KP+R ++L+ L +H+ +
Sbjct: 119 DYLVKPLRTNELLNLWTHMWR 139


>AT3G16857.2 | Symbols: ARR1, RR1 | response regulator 1 |
           chr3:5756113-5759139 FORWARD LENGTH=690
          Length = 690

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 21/139 (15%)

Query: 8   SQYHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHXXXXXXXXXXXXXXX 67
           S   VL VDD      ++ER+L+T  Y+VT  +    AL  L                  
Sbjct: 35  SGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLL------------------ 76

Query: 68  XHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAE 127
              +   ++VI+D  MP M G+ LL+ +     L   PV++MS+++  S + + +  GA 
Sbjct: 77  RKNKHGFDIVISDVHMPDMDGFKLLEHVGLEMDL---PVIMMSADDSKSVVLKGVTHGAV 133

Query: 128 EFFLKPVRQSDLVRLKSHI 146
           ++ +KPVR   L  +  H+
Sbjct: 134 DYLIKPVRMEALKNIWQHV 152


>AT2G01760.1 | Symbols: ARR14, RR14 | response regulator 14 |
           chr2:333041-334514 FORWARD LENGTH=382
          Length = 382

 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 22/148 (14%)

Query: 8   SQYHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHXXXXXXXXXXXXXXX 67
           S   +L VDD      ++E++L    YQVT       AL  L                  
Sbjct: 9   SGLRILVVDDDTSCLFILEKMLLRLMYQVTICSQADVALTIL------------------ 50

Query: 68  XHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAE 127
             ++   +LV++D  MPGM GY+LL+++       ++PV++MS +   + +   +  GA 
Sbjct: 51  RERKDSFDLVLSDVHMPGMNGYNLLQQVGLLE--MDLPVIMMSVDGRTTTVMTGINHGAC 108

Query: 128 EFFLKPVRQSDLVRLKSHI--KKTNLKK 153
           ++ +KP+R  +L  +  H+  +K  +KK
Sbjct: 109 DYLIKPIRPEELKNIWQHVVRRKCVMKK 136


>AT4G16110.1 | Symbols: ARR2, RR2 | response regulator 2 |
           chr4:9112979-9115785 FORWARD LENGTH=664
          Length = 664

 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 23/141 (16%)

Query: 12  VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHXXXXXXXXXXXXXXXXHQE 71
           VL VDD      ++ER+L T  Y+VT  +    AL  L                     +
Sbjct: 30  VLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLL------------------RKNK 71

Query: 72  VEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAEEFFL 131
              ++VI+D  MP M G+ LL+ +     L   PV++MS+++  S + + +  GA ++ +
Sbjct: 72  NGFDIVISDVHMPDMDGFKLLEHVGLEMDL---PVIMMSADDSKSVVLKGVTHGAVDYLI 128

Query: 132 KPVRQSDLVRLKSHI--KKTN 150
           KPVR   L  +  H+  KK N
Sbjct: 129 KPVRIEALKNIWQHVVRKKRN 149


>AT3G62670.1 | Symbols: ARR20, MEE41, RR20 | response regulator 20 |
           chr3:23176556-23177922 REVERSE LENGTH=352
          Length = 352

 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 73  EVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAEEFFLK 132
           E++LVI D+ MP + G D L  I +   L   PVVIMS E     +   ++ GA +F +K
Sbjct: 10  EIDLVIWDFHMPDINGLDALNIIGKQMDL---PVVIMSHEYKKETVMESIKYGACDFLVK 66

Query: 133 PVRQSDLVRLKSHIKKTNLKK 153
           PV +  +  L  H+ +  + K
Sbjct: 67  PVSKEVIAVLWRHVYRKRMSK 87