Miyakogusa Predicted Gene

Lj1g3v4157110.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4157110.1 Non Chatacterized Hit- tr|I1JUS7|I1JUS7_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,88.87,0,seg,NULL;
SUBFAMILY NOT NAMED,NULL; EUKARYOTIC TRANSLATION INITIATION FACTOR
3,NULL; Paf67,Translati,CUFF.32131.1
         (479 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G25757.1 | Symbols:  | RNA polymerase I-associated factor PAF...   751   0.0  
AT5G25754.1 | Symbols:  | RNA polymerase I-associated factor PAF...   751   0.0  

>AT5G25757.1 | Symbols:  | RNA polymerase I-associated factor PAF67
           | chr5:8965515-8967460 REVERSE LENGTH=514
          Length = 514

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/476 (78%), Positives = 415/476 (87%), Gaps = 24/476 (5%)

Query: 1   MASQDFDEQRQPPQEAGYDPNYVP----------------------HQMYETSFQTLSER 38
           MAS +  E+    +E+GYDPN VP                      HQM ETSFQ++SER
Sbjct: 1   MASSNEYEEGPGERESGYDPNMVPDSVKSFVSHMYRHIRDKNVYEIHQMCETSFQSISER 60

Query: 39  LFKDTPWPSVDAGAHYGDNDNAFCLLYREMRCRHLYARLTPKLRQRIESWDNYCPLFQVV 98
           LFKDTPWPSV+A A Y DND+ FCLLYREM  RHLYARL+P L+QRI+S+DNYC LFQVV
Sbjct: 61  LFKDTPWPSVEAIAPYVDNDHVFCLLYREMWFRHLYARLSPTLKQRIDSYDNYCSLFQVV 120

Query: 99  LHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQFDQAWNVYGVLN 158
           LHGVVNMQLPNQWLWDMVDEFVYQFQSFCQ+RAK+KNKTE+EIALLRQ D+AWNVYGVLN
Sbjct: 121 LHGVVNMQLPNQWLWDMVDEFVYQFQSFCQFRAKLKNKTEEEIALLRQHDKAWNVYGVLN 180

Query: 159 YLQALVEKSAIIQILEQEKEGLEQFTATDGYDYNGGSNVLKVLGYFSMVGLLRVHCLLGD 218
           +LQALVEKS IIQILE +K+GLE FT TDGYD++GGSNVLKVLGYFSMVGLLRVHCLLGD
Sbjct: 181 FLQALVEKSCIIQILEHDKDGLE-FTETDGYDFSGGSNVLKVLGYFSMVGLLRVHCLLGD 239

Query: 219 YHTGLKCLLPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVEAIREFNKILLYIYKT 278
           YHT LK L PIDITQ GVYTSVIG HI TIYHYGFA LMLRRYV+A+REFNKILLYI+KT
Sbjct: 240 YHTALKWLQPIDITQPGVYTSVIGCHIATIYHYGFATLMLRRYVDAVREFNKILLYIFKT 299

Query: 279 KQYHNKSPQYEQILKKNEQMYALLAICLSLCPQSRLVDETVNSQLREKYGEKMGRMQRYD 338
           KQYH KSPQYEQ+LKKNEQMYALLA+ LSLCPQ++LVDE+VNSQLR+KYGEKM RM R D
Sbjct: 300 KQYHQKSPQYEQLLKKNEQMYALLALSLSLCPQTKLVDESVNSQLRDKYGEKMMRMLRSD 359

Query: 339 DEAFAMYDELFSYACPKFITPSA-PSFDEPLVNYNQDAYRLQLKLFLYEAKQQQLLSGLR 397
           DEAF +YDELFSYACPKFITPSA P+F+EPLVNYNQDAYRLQLK+FLYE KQQQLLSG+R
Sbjct: 360 DEAFGIYDELFSYACPKFITPSAPPTFEEPLVNYNQDAYRLQLKMFLYEVKQQQLLSGVR 419

Query: 398 TFLKVYSTISLAKLASYMEVDEPTLRTILTTYKHKTHAVDSDGKITSNADVDFYID 453
           TFLKVYS+ISLAKLA+YMEVDEPTLRTIL TYKHKTH+VDSDG+I SNAD+DF+I+
Sbjct: 420 TFLKVYSSISLAKLANYMEVDEPTLRTILLTYKHKTHSVDSDGRIISNADIDFFIN 475


>AT5G25754.1 | Symbols:  | RNA polymerase I-associated factor PAF67
           | chr5:8953564-8955511 FORWARD LENGTH=514
          Length = 514

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/476 (78%), Positives = 415/476 (87%), Gaps = 24/476 (5%)

Query: 1   MASQDFDEQRQPPQEAGYDPNYVP----------------------HQMYETSFQTLSER 38
           MAS +  E+    +E+GYDPN VP                      HQM ETSFQ++SER
Sbjct: 1   MASSNEYEEGPGERESGYDPNMVPDSVKSFVSHMYRHIRDKNVYEIHQMCETSFQSISER 60

Query: 39  LFKDTPWPSVDAGAHYGDNDNAFCLLYREMRCRHLYARLTPKLRQRIESWDNYCPLFQVV 98
           LFKDTPWPSV+A A Y DND+ FCLLYREM  RHLYARL+P L+QRI+S+DNYC LFQVV
Sbjct: 61  LFKDTPWPSVEAIAPYVDNDHVFCLLYREMWFRHLYARLSPTLKQRIDSYDNYCSLFQVV 120

Query: 99  LHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQFDQAWNVYGVLN 158
           LHGVVNMQLPNQWLWDMVDEFVYQFQSFCQ+RAK+KNKTE+EIALLRQ D+AWNVYGVLN
Sbjct: 121 LHGVVNMQLPNQWLWDMVDEFVYQFQSFCQFRAKLKNKTEEEIALLRQHDKAWNVYGVLN 180

Query: 159 YLQALVEKSAIIQILEQEKEGLEQFTATDGYDYNGGSNVLKVLGYFSMVGLLRVHCLLGD 218
           +LQALVEKS IIQILE +K+GLE FT TDGYD++GGSNVLKVLGYFSMVGLLRVHCLLGD
Sbjct: 181 FLQALVEKSCIIQILEHDKDGLE-FTETDGYDFSGGSNVLKVLGYFSMVGLLRVHCLLGD 239

Query: 219 YHTGLKCLLPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVEAIREFNKILLYIYKT 278
           YHT LK L PIDITQ GVYTSVIG HI TIYHYGFA LMLRRYV+A+REFNKILLYI+KT
Sbjct: 240 YHTALKWLQPIDITQPGVYTSVIGCHIATIYHYGFATLMLRRYVDAVREFNKILLYIFKT 299

Query: 279 KQYHNKSPQYEQILKKNEQMYALLAICLSLCPQSRLVDETVNSQLREKYGEKMGRMQRYD 338
           KQYH KSPQYEQ+LKKNEQMYALLA+ LSLCPQ++LVDE+VNSQLR+KYGEKM RM R D
Sbjct: 300 KQYHQKSPQYEQLLKKNEQMYALLALSLSLCPQTKLVDESVNSQLRDKYGEKMMRMLRSD 359

Query: 339 DEAFAMYDELFSYACPKFITPSA-PSFDEPLVNYNQDAYRLQLKLFLYEAKQQQLLSGLR 397
           DEAF +YDELFSYACPKFITPSA P+F+EPLVNYNQDAYRLQLK+FLYE KQQQLLSG+R
Sbjct: 360 DEAFGIYDELFSYACPKFITPSAPPTFEEPLVNYNQDAYRLQLKMFLYEVKQQQLLSGVR 419

Query: 398 TFLKVYSTISLAKLASYMEVDEPTLRTILTTYKHKTHAVDSDGKITSNADVDFYID 453
           TFLKVYS+ISLAKLA+YMEVDEPTLRTIL TYKHKTH+VDSDG+I SNAD+DF+I+
Sbjct: 420 TFLKVYSSISLAKLANYMEVDEPTLRTILLTYKHKTHSVDSDGRIISNADIDFFIN 475