Miyakogusa Predicted Gene

Lj1g3v4157100.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4157100.1 Non Chatacterized Hit- tr|D5AB69|D5AB69_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,68.42,0.00005,seg,NULL,NODE_13245_length_1500_cov_52.554001.path2.1
         (294 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32750.1 | Symbols:  | unknown protein; Has 30201 Blast hits ...   350   9e-97

>AT4G32750.1 | Symbols:  | unknown protein; Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr4:15796415-15798091 REVERSE LENGTH=293
          Length = 293

 Score =  350 bits (897), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 179/295 (60%), Positives = 204/295 (69%), Gaps = 5/295 (1%)

Query: 1   MAIIGDALRQAFMPKREYESLREEEKAWGKLQRPXXXXXXXXXXXXXXXXXXXSLRIVFP 60
           MAIIGDALRQAFMPK+EYESLREE++AW KLQRP                   SL+IVFP
Sbjct: 1   MAIIGDALRQAFMPKQEYESLREEDRAWIKLQRPTLVSIVAFLCFVIFTCTIVSLKIVFP 60

Query: 61  GSDARRPFCVDRRIQPLQIGAKGGGSDSSDLFPGAFYLTDQEMADYYWMVVFVPSMVLFL 120
            +  +RPFC D ++QPL I  K   +  SDLFPGAFYLTDQE  DYYWMVVFVPS ++FL
Sbjct: 61  SNVLKRPFCSDIKLQPLPIYGK---ARDSDLFPGAFYLTDQETVDYYWMVVFVPSTIIFL 117

Query: 121 LSAVYLVAGITVAYSAPTRHGCLKVVENNYCASRRGGVRCLSILNXXXXXXXXXXXXXXX 180
           +S+VYLVAGI VAYSAP RHG LKVVENNYCASRRGGVRCLSILN               
Sbjct: 118 VSSVYLVAGIFVAYSAPHRHGFLKVVENNYCASRRGGVRCLSILNVVFAIIYGLLAIFLG 177

Query: 181 XXXXTFMSNCSTPLFWCYEVASWGFVVLYGGTAFFLRRKAAVILDEGSFSSRN-LGLEML 239
               T  S+CS PLFWCYE++SWG V+LY GTAF LRR+AA+ +DEG F +RN  GLEML
Sbjct: 178 SSLLTLGSSCSVPLFWCYEISSWGLVILYAGTAFSLRRRAALTIDEGEFGNRNDQGLEML 237

Query: 240 EANPLEVTPEVERRVNEGFKTWMG-XXXXXXXXXXXXXXXXXAPHLTHTNSNRQR 293
           EANPLE TP+VERRVNEGFK WMG                   P++THT S+RQR
Sbjct: 238 EANPLEFTPDVERRVNEGFKAWMGPSLLSSDEEEDEPDFYNEVPNVTHTLSSRQR 292