Miyakogusa Predicted Gene

Lj1g3v4139600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4139600.1 Non Chatacterized Hit- tr|D8U488|D8U488_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,34.1,3e-19,SPC25,Signal peptidase complex subunit 2; SUBFAMILY NOT
NAMED,NULL; MICROSOMAL SIGNAL PEPTIDASE 25 K,CUFF.31989.1
         (181 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39960.1 | Symbols:  | Microsomal signal peptidase 25 kDa sub...   251   3e-67
AT4G04200.1 | Symbols:  | Microsomal signal peptidase 25 kDa sub...   207   3e-54

>AT2G39960.1 | Symbols:  | Microsomal signal peptidase 25 kDa
           subunit (SPC25) | chr2:16681666-16683491 REVERSE
           LENGTH=192
          Length = 192

 Score =  251 bits (640), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 125/183 (68%), Positives = 143/183 (78%), Gaps = 4/183 (2%)

Query: 3   SKSPKKTNLLDHNSIKHILDESVSEIVKSNGYVEDVRLSNVRXXXXXXXXXXXXFSQFYK 62
           +K+ KK NLLDH+SIKHILDESVS+IV S GY EDVRLSN++             +QFY 
Sbjct: 10  NKNVKKANLLDHHSIKHILDESVSDIVTSRGYKEDVRLSNLKLILGTIIIVVALVAQFYN 69

Query: 63  KKFPENKDFVLACIALYVIFNGLLQLIIYTKEKDAILFTYPPAGS--GTGLVVSSKLPRF 120
           KKFPEN+DF++ CIALYV+ N +LQLI+YTKEK+AILFTYPP GS   TGLVVSSKLPRF
Sbjct: 70  KKFPENRDFLIGCIALYVVLNAVLQLILYTKEKNAILFTYPPEGSFTSTGLVVSSKLPRF 129

Query: 121 SDMYTLTIASAEPKSISTNEPVHFTKSVTQWFTNDGILVEGLFWKDVEALIAQYT--KPK 178
           SD YTLTI SA+PKSIS  + V  TKSVTQWFT DG+LVEGLFWKDVEALI  Y   +PK
Sbjct: 130 SDQYTLTIDSADPKSISAGKSVQLTKSVTQWFTKDGVLVEGLFWKDVEALIKNYAEEEPK 189

Query: 179 KSK 181
           K K
Sbjct: 190 KKK 192


>AT4G04200.1 | Symbols:  | Microsomal signal peptidase 25 kDa
           subunit (SPC25) | chr4:2027165-2028866 FORWARD
           LENGTH=190
          Length = 190

 Score =  207 bits (527), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 111/189 (58%), Positives = 132/189 (69%), Gaps = 16/189 (8%)

Query: 2   ASKSPKKTNLLDHNSIKHILDESVSEIVKSNGYVEDVRLSNVRXXXXXXXXXXXXFSQFY 61
           A+K+ KK NLLDH +IKH+LDESVS+IV S GY EDVRLSNV+             +QFY
Sbjct: 9   ATKNVKKVNLLDHIAIKHLLDESVSDIVTSRGYKEDVRLSNVKFLLGGIIIVVALVAQFY 68

Query: 62  KKKFPENKDFVLACIAL----YVIFNGLLQLIIYTKEKDAILFTYPPAGS--GTGLVVSS 115
            KK          C+ L    YV+   ++QLI+Y KEK+AILFTYP  GS   TGLVVSS
Sbjct: 69  NKKCG-------ICLLLDFGKYVVLTAVMQLILYIKEKNAILFTYPLEGSFTSTGLVVSS 121

Query: 116 KLPRFSDMYTLTIASAEPKSISTNEPVHFTKSVTQWFTNDGILVEGLFWKDVEALIAQYT 175
           KLPRFSD YTLTI SA+P+SIS  + V FTKSVTQW T DG+LVEGLFWKDVEAL+ +YT
Sbjct: 122 KLPRFSDQYTLTIDSADPQSISAGKSVQFTKSVTQWLTKDGVLVEGLFWKDVEALVKEYT 181

Query: 176 ---KPKKSK 181
              +PKK +
Sbjct: 182 EAGEPKKKR 190