Miyakogusa Predicted Gene

Lj1g3v4139580.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4139580.1 Non Chatacterized Hit- tr|C3ZEV0|C3ZEV0_BRAFL
Putative uncharacterized protein OS=Branchiostoma
flor,34.97,1e-18,SPC25,Signal peptidase complex subunit 2; SUBFAMILY
NOT NAMED,NULL; MICROSOMAL SIGNAL PEPTIDASE 25 K,CUFF.31988.1
         (184 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39960.1 | Symbols:  | Microsomal signal peptidase 25 kDa sub...   307   2e-84
AT4G04200.1 | Symbols:  | Microsomal signal peptidase 25 kDa sub...   251   2e-67

>AT2G39960.1 | Symbols:  | Microsomal signal peptidase 25 kDa
           subunit (SPC25) | chr2:16681666-16683491 REVERSE
           LENGTH=192
          Length = 192

 Score =  307 bits (787), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 149/183 (81%), Positives = 165/183 (90%), Gaps = 1/183 (0%)

Query: 3   SKSLKKANLLDHNSIKHILDESVSEIVTSRGYVEDVRLSNVRLLVGTVIIVIALFAQFYK 62
           +K++KKANLLDH+SIKHILDESVS+IVTSRGY EDVRLSN++L++GT+IIV+AL AQFY 
Sbjct: 10  NKNVKKANLLDHHSIKHILDESVSDIVTSRGYKEDVRLSNLKLILGTIIIVVALVAQFYN 69

Query: 63  KKFPENRDFLLACIALYVIFNGVLQLIIYTKEKNAILFTYPPAGSFTSTGLVVSSKLPRF 122
           KKFPENRDFL+ CIALYV+ N VLQLI+YTKEKNAILFTYPP GSFTSTGLVVSSKLPRF
Sbjct: 70  KKFPENRDFLIGCIALYVVLNAVLQLILYTKEKNAILFTYPPEGSFTSTGLVVSSKLPRF 129

Query: 123 SDMYTLTIASADPKSISANEPKHLTKSVTQWFTKDGVLVEGLFWKDVEALIAQYT-KEPK 181
           SD YTLTI SADPKSISA +   LTKSVTQWFTKDGVLVEGLFWKDVEALI  Y  +EPK
Sbjct: 130 SDQYTLTIDSADPKSISAGKSVQLTKSVTQWFTKDGVLVEGLFWKDVEALIKNYAEEEPK 189

Query: 182 KSK 184
           K K
Sbjct: 190 KKK 192


>AT4G04200.1 | Symbols:  | Microsomal signal peptidase 25 kDa
           subunit (SPC25) | chr4:2027165-2028866 FORWARD
           LENGTH=190
          Length = 190

 Score =  251 bits (642), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 129/185 (69%), Positives = 148/185 (80%), Gaps = 5/185 (2%)

Query: 2   ASKSLKKANLLDHNSIKHILDESVSEIVTSRGYVEDVRLSNVRLLVGTVIIVIALFAQFY 61
           A+K++KK NLLDH +IKH+LDESVS+IVTSRGY EDVRLSNV+ L+G +IIV+AL AQFY
Sbjct: 9   ATKNVKKVNLLDHIAIKHLLDESVSDIVTSRGYKEDVRLSNVKFLLGGIIIVVALVAQFY 68

Query: 62  KKKFPENRDFLLACIALYVIFNGVLQLIIYTKEKNAILFTYPPAGSFTSTGLVVSSKLPR 121
            KK       LL     YV+   V+QLI+Y KEKNAILFTYP  GSFTSTGLVVSSKLPR
Sbjct: 69  NKKCG---ICLLLDFGKYVVLTAVMQLILYIKEKNAILFTYPLEGSFTSTGLVVSSKLPR 125

Query: 122 FSDMYTLTIASADPKSISANEPKHLTKSVTQWFTKDGVLVEGLFWKDVEALIAQYTK--E 179
           FSD YTLTI SADP+SISA +    TKSVTQW TKDGVLVEGLFWKDVEAL+ +YT+  E
Sbjct: 126 FSDQYTLTIDSADPQSISAGKSVQFTKSVTQWLTKDGVLVEGLFWKDVEALVKEYTEAGE 185

Query: 180 PKKSK 184
           PKK +
Sbjct: 186 PKKKR 190