Miyakogusa Predicted Gene

Lj1g3v4119290.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4119290.1 tr|Q2HSY2|Q2HSY2_MEDTR Cyclin-like F-box
OS=Medicago truncatula GN=MTR_7g089670 PE=4 SV=1,45.45,2e-19,SUBFAMILY
NOT NAMED,NULL; FAMILY NOT NAMED,NULL; F-box domain,F-box domain,
cyclin-like; FBOX,F-box ,CUFF.31961.1
         (110 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G32560.1 | Symbols:  | F-box family protein | chr2:13824820-1...    84   2e-17
AT2G26850.1 | Symbols:  | F-box family protein | chr2:11449369-1...    82   7e-17
AT2G41170.1 | Symbols:  | F-box family protein | chr2:17159310-1...    79   5e-16

>AT2G32560.1 | Symbols:  | F-box family protein |
           chr2:13824820-13826761 FORWARD LENGTH=371
          Length = 371

 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 56/90 (62%), Gaps = 3/90 (3%)

Query: 9   NMISLLNLPEHVLDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENHMKQKWGRIIGDD 68
           + +S+L+LPE  LDCIL  L P  L  M+ VC+ LR+ C SDHLWE H+K KWG+I+G  
Sbjct: 58  DQMSVLDLPELALDCILDLLPPSGLCSMARVCSSLRERCVSDHLWEKHLKTKWGKILGPA 117

Query: 69  TFEEWQWHLTTIKSGKTLLNQDINQNGSLG 98
              EWQ +   I S    L+   +Q G+LG
Sbjct: 118 AHREWQCY---ISSSTYHLDSPHHQTGNLG 144


>AT2G26850.1 | Symbols:  | F-box family protein |
           chr2:11449369-11450889 REVERSE LENGTH=371
          Length = 371

 Score = 82.0 bits (201), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 51/69 (73%)

Query: 11  ISLLNLPEHVLDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENHMKQKWGRIIGDDTF 70
           +S+L+LP+  LDCIL+ L P EL  M+ VC+ LR+ C SDHLWE H+K KWG+I+G    
Sbjct: 60  MSILDLPDLPLDCILELLPPSELCTMARVCSSLRERCVSDHLWEKHLKTKWGKILGPSAH 119

Query: 71  EEWQWHLTT 79
           +EWQ +L++
Sbjct: 120 KEWQCYLSS 128


>AT2G41170.1 | Symbols:  | F-box family protein |
           chr2:17159310-17160845 REVERSE LENGTH=371
          Length = 371

 Score = 79.0 bits (193), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/72 (58%), Positives = 55/72 (76%)

Query: 9   NMISLLNLPEHVLDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENHMKQKWGRIIGDD 68
           N +SLL+LP+  LDCIL++LSP EL  M+ VC+ LRD C SDHLWE HM+ KWGR++GD 
Sbjct: 55  NKMSLLDLPDLTLDCILEKLSPSELCAMTSVCSELRDKCVSDHLWEKHMETKWGRLMGDA 114

Query: 69  TFEEWQWHLTTI 80
             +EW+ H+ TI
Sbjct: 115 AIQEWKSHVATI 126