Miyakogusa Predicted Gene

Lj1g3v4118240.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4118240.1 tr|Q2HSY4|Q2HSY4_MEDTR Cyclin-like F-box
OS=Medicago truncatula GN=MtrDRAFT_AC150889g18v2 PE=4
SV=1,37.82,6e-19,FBOX,F-box domain, cyclin-like; no description,NULL;
F-box,F-box domain, cyclin-like; A Receptor for,CUFF.31985.1
         (168 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G26850.1 | Symbols:  | F-box family protein | chr2:11449369-1...   113   7e-26
AT2G32560.1 | Symbols:  | F-box family protein | chr2:13824820-1...    99   1e-21
AT2G41170.1 | Symbols:  | F-box family protein | chr2:17159310-1...    85   2e-17

>AT2G26850.1 | Symbols:  | F-box family protein |
           chr2:11449369-11450889 REVERSE LENGTH=371
          Length = 371

 Score =  113 bits (282), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 98/168 (58%), Gaps = 13/168 (7%)

Query: 11  ICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKWGRIINGEST 70
           + +L+LP+L LDCIL+ L P EL  M+ VC+ LR+ C SDHLWE  +  KWG+I+ G S 
Sbjct: 60  MSILDLPDLPLDCILELLPPSELCTMARVCSSLRERCVSDHLWEKHLKTKWGKIL-GPSA 118

Query: 71  FKEWQWHLTKLNSIETLFNINLDWSLGSLCGSLHELCIGSYLEGCGHVQRFLSNNPM--- 127
            KEWQ +L+    +++  +      L  +   +  L   S      H +R+ S+ P+   
Sbjct: 119 HKEWQCYLSSPYHLDSPHHKTSHLGLAKIISLMRSL--SSIFRDDDHRRRYPSSIPLDST 176

Query: 128 MGLYLSLDTGKFWFPAQVY-CDCALVSNVL------FSYDSNTDTFKA 168
           M  YLSL+TG+FWFPAQVY  +   V  +L       SYD++T+TF+A
Sbjct: 177 MNFYLSLETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDTDTNTFQA 224


>AT2G32560.1 | Symbols:  | F-box family protein |
           chr2:13824820-13826761 FORWARD LENGTH=371
          Length = 371

 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/177 (38%), Positives = 97/177 (54%), Gaps = 26/177 (14%)

Query: 9   NSICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKWGRIINGE 68
           + + +L+LPEL LDCIL  L P  L  M+ VC+ LR+ C SDHLWE  +  KWG+I+ G 
Sbjct: 58  DQMSVLDLPELALDCILDLLPPSGLCSMARVCSSLRERCVSDHLWEKHLKTKWGKIL-GP 116

Query: 69  STFKEWQWHLTKLNSIETLFNINLDWSLGSLCGSLHELCIGSYLEGCGHVQR-------F 121
           +  +EWQ +++           +LD S     G+L    I S +     V R       +
Sbjct: 117 AAHREWQCYISSS-------TYHLD-SPHHQTGNLGFAKIISLIRSLSSVFREDKQRRGY 168

Query: 122 LSNNPM---MGLYLSLDTGKFWFPAQVY-CDCALVSNVL------FSYDSNTDTFKA 168
            S+ P+   M  YLSL+TG+FWFPAQVY  +   V  +L       SYD++TDTF+A
Sbjct: 169 ASSLPLDSSMSCYLSLETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDTHTDTFQA 225


>AT2G41170.1 | Symbols:  | F-box family protein |
           chr2:17159310-17160845 REVERSE LENGTH=371
          Length = 371

 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 17/161 (10%)

Query: 23  CILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKWGRIINGESTFKEWQWHLTKLN 82
           CIL++LSP EL  M+ VC+ LRD C SDHLWE  +  KWGR++ G++  +EW+ H+  + 
Sbjct: 69  CILEKLSPSELCAMTSVCSELRDKCVSDHLWEKHMETKWGRLM-GDAAIQEWKSHVATIM 127

Query: 83  SIETLFNINL-----DWSLGSLCGSLHELCIGSYLEGC---GHVQRFLSNNPMMGLYLSL 134
              T  + +      +WS      +L      S   GC   G        + +M  Y +L
Sbjct: 128 RCLTSSSSSSRKSKPNWS-SRFVANLKPFAWLSSNHGCENRGSSSYLAPIDSVMYWYSNL 186

Query: 135 DTGKFWFPAQVYCDCALVSNVLFS-------YDSNTDTFKA 168
           + GKFWFPAQVY         + S       YD  TDTF+A
Sbjct: 187 ENGKFWFPAQVYNRENGHVGFMMSCYDAKIRYDFKTDTFQA 227