Miyakogusa Predicted Gene

Lj1g3v4118230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4118230.1 tr|Q2HSX6|Q2HSX6_MEDTR Cyclin-like F-box
OS=Medicago truncatula GN=MTR_7g089730 PE=4
SV=1,73.21,9e-16,FBOX,F-box domain, cyclin-like; F-box,F-box domain,
cyclin-like; F-box domain,F-box domain, cyclin-l,CUFF.31986.1
         (140 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G26850.1 | Symbols:  | F-box family protein | chr2:11449369-1...    65   1e-11
AT2G32560.1 | Symbols:  | F-box family protein | chr2:13824820-1...    65   2e-11
AT2G41170.1 | Symbols:  | F-box family protein | chr2:17159310-1...    60   7e-10

>AT2G26850.1 | Symbols:  | F-box family protein |
           chr2:11449369-11450889 REVERSE LENGTH=371
          Length = 371

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 41/59 (69%)

Query: 11  ICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKWGRIINDTG 69
           + +L+LP+L LDCIL+ L P EL  M+ VC+ LR+ C SDHLWE  +  KWG+I+  + 
Sbjct: 60  MSILDLPDLPLDCILELLPPSELCTMARVCSSLRERCVSDHLWEKHLKTKWGKILGPSA 118



 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 9/83 (10%)

Query: 67  DTGKFWFPAQVYC-DCALVSNVL------FSYDSNTDTFKARAPSWGWKVIG--HGFRWE 117
           +TG+FWFPAQVY  +   V  +L       SYD++T+TF+AR P  G + I       WE
Sbjct: 184 ETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDTDTNTFQARYPPHGKRAIAVEKDVTWE 243

Query: 118 KLRISPVEDPTCVRYFCDCLEDL 140
           ++R +PV+      Y  D L +L
Sbjct: 244 RIRAAPVDASPHNLYVSDSLNEL 266


>AT2G32560.1 | Symbols:  | F-box family protein |
           chr2:13824820-13826761 FORWARD LENGTH=371
          Length = 371

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 39/58 (67%)

Query: 9   NSICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKWGRIIN 66
           + + +L+LPEL LDCIL  L P  L  M+ VC+ LR+ C SDHLWE  +  KWG+I+ 
Sbjct: 58  DQMSVLDLPELALDCILDLLPPSGLCSMARVCSSLRERCVSDHLWEKHLKTKWGKILG 115



 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 9/83 (10%)

Query: 67  DTGKFWFPAQVYC-DCALVSNVL------FSYDSNTDTFKARAPSWGWK--VIGHGFRWE 117
           +TG+FWFPAQVY  +   V  +L       SYD++TDTF+AR P  G +   I  G  W+
Sbjct: 185 ETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDTHTDTFQARYPPHGRRASAIEKGVTWD 244

Query: 118 KLRISPVEDPTCVRYFCDCLEDL 140
           ++R +P++    + +  D L++L
Sbjct: 245 RIRAAPIDASPHLLHVSDSLKEL 267


>AT2G41170.1 | Symbols:  | F-box family protein |
           chr2:17159310-17160845 REVERSE LENGTH=371
          Length = 371

 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 33/47 (70%)

Query: 23  CILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKWGRIINDTG 69
           CIL++LSP EL  M+ VC+ LRD C SDHLWE  +  KWGR++ D  
Sbjct: 69  CILEKLSPSELCAMTSVCSELRDKCVSDHLWEKHMETKWGRLMGDAA 115