Miyakogusa Predicted Gene

Lj1g3v4118220.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4118220.2 Non Chatacterized Hit- tr|B6EDA1|B6EDA1_TRIUA
Putative cyclin-like F-box (Fragment) OS=Triticum
urar,46.43,0.0000000000001,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.31968.2
         (226 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G26850.1 | Symbols:  | F-box family protein | chr2:11449369-1...   200   6e-52
AT2G32560.1 | Symbols:  | F-box family protein | chr2:13824820-1...   189   2e-48
AT2G41170.1 | Symbols:  | F-box family protein | chr2:17159310-1...   168   3e-42

>AT2G26850.1 | Symbols:  | F-box family protein |
           chr2:11449369-11450889 REVERSE LENGTH=371
          Length = 371

 Score =  200 bits (509), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 98/193 (50%), Positives = 137/193 (70%), Gaps = 10/193 (5%)

Query: 41  SKMALLVCLESGRFWFPAQVYKR------VPLYCYDAIVSYDSKTDTFRARSPNNGWRMI 94
           S M   + LE+GRFWFPAQVY R        L CYDA +SYD+ T+TF+AR P +G R I
Sbjct: 175 STMNFYLSLETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDTDTNTFQARYPPHGKRAI 234

Query: 95  --EGNIEWDRLRSSPVENFSRKFYLSD-MNDLKPGDHIEIQKRKRKEYPYDWWFAIVGHL 151
             E ++ W+R+R++PV+      Y+SD +N+LKPGDHIEIQ R+ KE+PY WW+++VGH+
Sbjct: 235 AVEKDVTWERIRAAPVDASPHNLYVSDSLNELKPGDHIEIQWRRNKEFPYGWWYSVVGHM 294

Query: 152 ESCDENVNHCLCQQSDMLVVEFKQYQHGSRWRRSVLNRNVYEEQGSRL-CWMGGIRKLDK 210
           ESCD N+NHC C  S+M+V+EF QY  GSRWR++++NR  + E+G+    + GGIRK++ 
Sbjct: 295 ESCDGNLNHCQCHNSEMMVLEFNQYTVGSRWRKTMINRRDHREKGNEEDGFYGGIRKINC 354

Query: 211 EEEIERWNSLLSS 223
           +E+IE W  L  S
Sbjct: 355 KEDIEMWKRLWPS 367


>AT2G32560.1 | Symbols:  | F-box family protein |
           chr2:13824820-13826761 FORWARD LENGTH=371
          Length = 371

 Score =  189 bits (479), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 94/186 (50%), Positives = 126/186 (67%), Gaps = 9/186 (4%)

Query: 41  SKMALLVCLESGRFWFPAQVYKR------VPLYCYDAIVSYDSKTDTFRARSPNNGWRM- 93
           S M+  + LE+GRFWFPAQVY R        L CYDA +SYD+ TDTF+AR P +G R  
Sbjct: 176 SSMSCYLSLETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDTHTDTFQARYPPHGRRAS 235

Query: 94  -IEGNIEWDRLRSSPVENFSRKFYLSD-MNDLKPGDHIEIQKRKRKEYPYDWWFAIVGHL 151
            IE  + WDR+R++P++      ++SD + +LKPGDHIEIQ R+ KE+PY WW+ +V HL
Sbjct: 236 AIEKGVTWDRIRAAPIDASPHLLHVSDSLKELKPGDHIEIQWRRNKEFPYGWWYGLVRHL 295

Query: 152 ESCDENVNHCLCQQSDMLVVEFKQYQHGSRWRRSVLNRNVYEEQGSRLCWMGGIRKLDKE 211
           ESCD + NHC C  S+ +V+EF QY  GSRWRR+++ R+  EE      + GGIRKL+ +
Sbjct: 296 ESCDGDHNHCHCHLSETVVLEFNQYTVGSRWRRTMIMRDHKEEGNEEDGFYGGIRKLNCK 355

Query: 212 EEIERW 217
           EEI  W
Sbjct: 356 EEIAMW 361


>AT2G41170.1 | Symbols:  | F-box family protein |
           chr2:17159310-17160845 REVERSE LENGTH=371
          Length = 371

 Score =  168 bits (425), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 94/212 (44%), Positives = 128/212 (60%), Gaps = 9/212 (4%)

Query: 21  LSLHSYLENFGDLTSLFQKYSKMALLVCLESGRFWFPAQVYKR------VPLYCYDAIVS 74
           LS +   EN G  + L    S M     LE+G+FWFPAQVY R        + CYDA + 
Sbjct: 158 LSSNHGCENRGSSSYLAPIDSVMYWYSNLENGKFWFPAQVYNRENGHVGFMMSCYDAKIR 217

Query: 75  YDSKTDTFRARSPNNGWRMIEGNIEWDRLRSSPVENFSRKFYLSD-MNDLKPGDHIEIQK 133
           YD KTDTF+AR   +G R  E  + W RLR S  +  SR  ++SD ++ L+PGDH EIQ 
Sbjct: 218 YDFKTDTFQARYSAHGRRAAEEKVTWQRLRPSQDDTKSRDLHVSDCLHGLRPGDHFEIQW 277

Query: 134 RKRKEYPYDWWFAIVGHLESCDENVNHCLCQQSDMLVVEFKQYQHGSRWRRSVLNRNVYE 193
           R+ KE+PY WWF IVGHL++CD  V +C C   + +V+EF+Q++  S WRR+V+ R  + 
Sbjct: 278 RRTKEFPYGWWFGIVGHLQNCD-GVQNCRCDSDENVVMEFRQFRPESPWRRTVIKRKDHR 336

Query: 194 EQGSRL-CWMGGIRKLDKEEEIERWNSLLSSR 224
           E G+    + GG++KL  EEEI  W  L  S+
Sbjct: 337 ETGNEENGFYGGVKKLGTEEEISTWKQLWPSQ 368