Miyakogusa Predicted Gene

Lj1g3v4107150.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4107150.1 Non Chatacterized Hit- tr|D0NK77|D0NK77_PHYIT
Putative uncharacterized protein OS=Phytophthora
infes,29.36,9e-19,Rhomboid-like,NULL; UBA-like,UBA-like;
UBA,Ubiquitin-associated/translation elongation factor EF1B,
,CUFF.31960.1
         (293 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56740.1 | Symbols:  | Ubiquitin-associated (UBA) protein | c...   426   e-120
AT2G41160.1 | Symbols:  | Ubiquitin-associated (UBA) protein | c...   400   e-112

>AT3G56740.1 | Symbols:  | Ubiquitin-associated (UBA) protein |
           chr3:21015631-21017883 FORWARD LENGTH=293
          Length = 293

 Score =  426 bits (1095), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/294 (74%), Positives = 251/294 (85%), Gaps = 3/294 (1%)

Query: 2   INGGPSGFTNAPITRAFIVASALFTIFFGIQGRFNTLGLSYQDIFGKLRLWKLIISIFSF 61
           +NGGPSGF NAP+T+AF++ SALFT+FFGIQGR + LGLSYQDIF K R+WKLI+S F+F
Sbjct: 1   MNGGPSGFHNAPVTKAFVITSALFTVFFGIQGRSSKLGLSYQDIFEKFRIWKLIMSTFAF 60

Query: 62  SSTPELMFGLYLLYYFRVFERQIGSNKYSVFIAFSVLNSLLFEAVAVALLKDPTANLVTP 121
           SSTPELMFGLYLLYYFRVFERQIGSNKYSVFI FS   SLL E + ++LLKD TANL+T 
Sbjct: 61  SSTPELMFGLYLLYYFRVFERQIGSNKYSVFILFSGTVSLLLEVILLSLLKDTTANLLTS 120

Query: 122 GPYGLIFASFVPFFFDIPVSTRYRVFGFHFSDKTFIYLAGLQLLLSSWKRSILPGMCGIL 181
           GPYGLIFASF+PF+ DIPVSTR+RVFG +FSDK+FIYLAG+QLLLSSWKRSI PG+CGI+
Sbjct: 121 GPYGLIFASFIPFYLDIPVSTRFRVFGVNFSDKSFIYLAGVQLLLSSWKRSIFPGICGII 180

Query: 182 AGSLYRLNVFYIRKAKIPELIASFFSRLSLPSMGS--PRAPSTRNVVGNIPSYPARPVER 239
           AGSLYRLN+  IRKAK PE +ASFFSRLS PS G+  P APS RN+VG I     R  ER
Sbjct: 181 AGSLYRLNILGIRKAKFPEFVASFFSRLSFPSFGNSPPPAPS-RNIVGTISPNTGRRAER 239

Query: 240 NYPAPNQSAVEPSEDSIATLVSMGFDRNSARQALVQARNDVNVATNILLEAQSH 293
           + PAP  S+VEPSE++I TLVSMGFDRN+ARQALV ARNDVN ATNILLEAQSH
Sbjct: 240 SQPAPLPSSVEPSEEAITTLVSMGFDRNAARQALVHARNDVNAATNILLEAQSH 293


>AT2G41160.1 | Symbols:  | Ubiquitin-associated (UBA) protein |
           chr2:17156314-17158687 REVERSE LENGTH=287
          Length = 287

 Score =  400 bits (1028), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/292 (68%), Positives = 234/292 (80%), Gaps = 5/292 (1%)

Query: 2   INGGPSGFTNAPITRAFIVASALFTIFFGIQGRFNTLGLSYQDIFGKLRLWKLIISIFSF 61
           +NGGPSGF NAP+T+AF++A+ALFT+FFGI+G  + LGLSYQDIF K R+WKLIIS F+F
Sbjct: 1   MNGGPSGFNNAPVTKAFVIATALFTVFFGIRGGSSKLGLSYQDIFEKFRIWKLIISAFAF 60

Query: 62  SSTPELMFGLYLLYYFRVFERQIGSNKYSVFIAFSVLNSLLFEAVAVALLKDPTANLVTP 121
           SST +L+ GLYLLY+FRVFERQIGSNKYSVFI FS   SL+ E + ++L KDPTANL+T 
Sbjct: 61  SSTTQLLSGLYLLYFFRVFERQIGSNKYSVFIFFSGFVSLILETILLSLTKDPTANLLTS 120

Query: 122 GPYGLIFASFVPFFFDIPVSTRYRVFGFHFSDKTFIYLAGLQLLLSSWKRSILPGMCGIL 181
           GPY L+FASFVPFF DIPV+ R+ V G HFSDK+FIYLAG+QLLLSSWKRSI  G+CGI+
Sbjct: 121 GPYALVFASFVPFFLDIPVTKRFGVLGVHFSDKSFIYLAGVQLLLSSWKRSIFTGICGII 180

Query: 182 AGSLYRLNVFYIRKAKIPELIASFFSRLSLPSMGSPRAPSTRNVVGNIPSYPARPVERNY 241
           AGSLYRLN+F IRKAK PE +AS FSR SLPS+ S   P  R      P+   R   R Y
Sbjct: 181 AGSLYRLNIFGIRKAKFPEFMASLFSRFSLPSLSSHSQPPRRTS----PNL-GRQAVRAY 235

Query: 242 PAPNQSAVEPSEDSIATLVSMGFDRNSARQALVQARNDVNVATNILLEAQSH 293
            AP  S  EPSE++IATLVSMGFD+N+ARQALV ARNDVN ATNILLEA SH
Sbjct: 236 RAPMPSTTEPSEEAIATLVSMGFDQNAARQALVHARNDVNAATNILLEAHSH 287