Miyakogusa Predicted Gene

Lj1g3v4107040.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4107040.2 tr|F2CX46|F2CX46_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,44.35,3e-18,ARV1,Arv1 protein; seg,NULL; Arv1,Arv1
protein,CUFF.31951.2
         (249 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G01020.1 | Symbols: ARV1 | Arv1-like protein | chr1:6915-8666...   225   2e-59
AT4G01510.1 | Symbols: ARV2 | Arv1-like protein | chr4:642755-64...   199   2e-51
AT1G01020.2 | Symbols: ARV1 | Arv1-like protein | chr1:7315-8666...   160   5e-40

>AT1G01020.1 | Symbols: ARV1 | Arv1-like protein | chr1:6915-8666
           REVERSE LENGTH=245
          Length = 245

 Score =  225 bits (574), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 117/241 (48%), Positives = 157/241 (65%), Gaps = 10/241 (4%)

Query: 3   YTCIQCGFPIKTLYIQYSPGNIRLLKCENCKAVADEYIECEIMILVIDLLLHKPKAYRHL 62
           + C+ CGF +K+L+IQYSPGNIRL+KC NCK VADEYIECE MI+ IDL+LH+PK YRH+
Sbjct: 6   HRCVGCGFRVKSLFIQYSPGNIRLMKCGNCKEVADEYIECERMIIFIDLILHRPKVYRHV 65

Query: 63  LYNVINQETLKFQGLLWKSAITFLLFDAYKCLILENXXXXXXXXXXXXXXXXXWCKILID 122
           LYN IN  T+  Q LLWK    +LL D Y+ L+L                     K+LI 
Sbjct: 66  LYNAINPATVNIQHLLWKLVFAYLLLDCYRSLLLRKSDEESSFSDSPVLLSI---KVLIG 122

Query: 123 VFFGNFMFILAFFFMIKMFLHTSISISRCNDLLLVLMISCYFKIFLVAMMVWEFPSSAIF 182
           V   N  FI++F    K  L+    +SR  +++L + IS YFKIFL+AM+VWEFP S IF
Sbjct: 123 VLSANAAFIISFAIATKGLLN---EVSRRREIMLGIFISSYFKIFLLAMLVWEFPMSVIF 179

Query: 183 IIELFCLSSNAVALKVMTESTMSRCVCTCLCAYATKFLVTCVPE----LMLLGELIQGWS 238
            +++  L+SN++ALKVMTESTM+RC+  CL A+  +FLV  + E    L+ +G L+Q  S
Sbjct: 180 FVDILLLTSNSMALKVMTESTMTRCIAVCLIAHLIRFLVGQIFEPTIFLIQIGSLLQYMS 239

Query: 239 H 239
           +
Sbjct: 240 Y 240


>AT4G01510.1 | Symbols: ARV2 | Arv1-like protein |
           chr4:642755-644190 FORWARD LENGTH=228
          Length = 228

 Score =  199 bits (505), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 110/218 (50%), Positives = 148/218 (67%), Gaps = 7/218 (3%)

Query: 4   TCIQCGFPIKTLYIQYSPGNIRLLKCENCKAVADEYIECEIMILVIDLLLHKPKAYRHLL 63
           TC++CG  +K+L+IQYSPGN RL+KCENC+ VADEY+ECE++I+ IDL+LHK KAYRHLL
Sbjct: 7   TCVECGHKVKSLFIQYSPGNFRLMKCENCEEVADEYVECELLIIFIDLILHKTKAYRHLL 66

Query: 64  YNVINQETLKFQGLLWKSAITFLLFDAYKCLILENXXXXXXXXXXXXXXXXXWCKILIDV 123
           YNV+NQE+   Q LLWK  + +LL D Y+ L+L                     ++L++V
Sbjct: 67  YNVVNQESANVQHLLWKLVLAYLLLDTYRSLLLRRTNDGSNVSMSFLFESL---EVLVNV 123

Query: 124 FFGNFMFILAFFFMIKMFLHTSISISRCNDLLLVLMISCYFKIFLVAMMVWEFPSSAIFI 183
              NF F+ +F F  K+ L     + R  ++LL ++IS Y KIFL AM VWEFP S IFI
Sbjct: 124 LSANFAFVFSFAFAAKLML----VMPRGKEILLTILISSYVKIFLFAMPVWEFPVSVIFI 179

Query: 184 IELFCLSSNAVALKVMTESTMSRCVCTCLCAYATKFLV 221
           +++  L+SNAVALKVMTES  SRC+  C  A++ +FLV
Sbjct: 180 VDMLVLTSNAVALKVMTESATSRCLAVCFIAHSIRFLV 217


>AT1G01020.2 | Symbols: ARV1 | Arv1-like protein | chr1:7315-8666
           REVERSE LENGTH=191
          Length = 191

 Score =  160 bits (406), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 83/171 (48%), Positives = 108/171 (63%), Gaps = 6/171 (3%)

Query: 3   YTCIQCGFPIKTLYIQYSPGNIRLLKCENCKAVADEYIECEIMILVIDLLLHKPKAYRHL 62
           + C+ CGF +K+L+IQYSPGNIRL+KC NCK VADEYIECE MI+ IDL+LH+PK YRH+
Sbjct: 6   HRCVGCGFRVKSLFIQYSPGNIRLMKCGNCKEVADEYIECERMIIFIDLILHRPKVYRHV 65

Query: 63  LYNVINQETLKFQGLLWKSAITFLLFDAYKCLILENXXXXXXXXXXXXXXXXXWCKILID 122
           LYN IN  T+  Q LLWK    +LL D Y+ L+L                     K+LI 
Sbjct: 66  LYNAINPATVNIQHLLWKLVFAYLLLDCYRSLLLRKSDEESSFSDSPVLLSI---KVLIG 122

Query: 123 VFFGNFMFILAFFFMIKMFLHTSISISRCNDLLLVLMISCYFKIFLVAMMV 173
           V   N  FI++F    K  L+    +SR  +++L + IS YFKIFL+AM+V
Sbjct: 123 VLSANAAFIISFAIATKGLLN---EVSRRREIMLGIFISSYFKIFLLAMLV 170