Miyakogusa Predicted Gene

Lj1g3v4107020.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4107020.1 tr|G7L5Y2|G7L5Y2_MEDTR General transcription
factor IIH subunit OS=Medicago truncatula
GN=MTR_7g0894,89.91,0,Ssl1,Ssl1-like; C1_4,TFIIH C1-like domain;
ZINC_FINGER_C2H2_1,Zinc finger, C2H2; ssl1: transcription,CUFF.31953.1
         (422 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G05055.1 | Symbols: ATGTF2H2, GTF2H2 | general transcription ...   619   e-177

>AT1G05055.1 | Symbols: ATGTF2H2, GTF2H2 | general transcription
           factor II H2 | chr1:1448913-1450852 REVERSE LENGTH=421
          Length = 421

 Score =  619 bits (1596), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 291/392 (74%), Positives = 326/392 (83%), Gaps = 1/392 (0%)

Query: 29  WERTYAEDRSWESLQEDESGLLRPIDNTAIHHAQYXXXXXXXXXXXXXXXIQKGLIRYLY 88
           WER Y +DRSWE LQEDESGLLRPIDN+AI+HAQY               IQKGLIRYLY
Sbjct: 26  WERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQYRRRLRMLSAAAAGTRIQKGLIRYLY 85

Query: 89  IVVDLSKAAAETDFRPSRMAVIGRLVETFIREFFDQNPLSHVGLVTIKDGVAHCLTDLGG 148
           IV+D S+AAAE DFRPSRMA++ + VE FIREFFDQNPLS +GLV+IK+GVAH LTDLGG
Sbjct: 86  IVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFFDQNPLSQIGLVSIKNGVAHTLTDLGG 145

Query: 149 SPESHIKALTGKLECSGDASLQNALELVVGYLNQIPSYGHREVLILYSALSTCDPGDLME 208
           SPE+HIKAL GKLE  GD+SLQNALELV  +LNQ+PSYGHREVLILYSAL TCDPGD+ME
Sbjct: 146 SPETHIKALMGKLEALGDSSLQNALELVHEHLNQVPSYGHREVLILYSALCTCDPGDIME 205

Query: 209 TIQKCRKSKIRCSVIGLAAEMFICKHICQETGGTYSVALDESHFKELVLEHAPPPPAIAE 268
           TIQKC+KSK+RCSVIGL+AEMFICKH+CQETGG YSVA+DE H K+L+LEHAPPPPAIAE
Sbjct: 206 TIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGLYSVAVDEVHLKDLLLEHAPPPPAIAE 265

Query: 269 YATANLIKMGFPQRAAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRVCGLTLIS 328
           +A ANLIKMGFPQRAAEGS+AIC+CH+E K G GY CPRCK RVC+LPTEC +CGLTL+S
Sbjct: 266 FAIANLIKMGFPQRAAEGSMAICSCHKEVKIGAGYMCPRCKARVCDLPTECTICGLTLVS 325

Query: 329 SPHLARSYHHLFPIVPFDEI-SPSSRNDPSHSFSNTCFGCQQSLLSQGNVPGISVTCPKC 387
           SPHLARSYHHLFPI PFDE+ + SS ND       +CFGCQQSL+  GN P   VTC KC
Sbjct: 326 SPHLARSYHHLFPIAPFDEVPALSSLNDNRRKLGKSCFGCQQSLIGAGNKPVPCVTCRKC 385

Query: 388 KQQFCLDCDIYIHESLHNCPGCESFRHSTSVT 419
           K  FCLDCDIYIHESLHNCPGCES     SV+
Sbjct: 386 KHYFCLDCDIYIHESLHNCPGCESIHRPKSVS 417