Miyakogusa Predicted Gene
- Lj1g3v4104770.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4104770.1 tr|A2Q4K2|A2Q4K2_MEDTR DNA repair protein RAD5
OS=Medicago truncatula GN=MTR_7g089190 PE=4 SV=1,66.71,0,seg,NULL;
ZF_RING_1,Zinc finger, RING-type, conserved site; no description,NULL;
no description,Zinc,CUFF.31927.1
(811 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G05130.1 | Symbols: | DNA/RNA helicase protein | chr5:151217... 615 e-176
AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein | chr5:75... 323 3e-88
AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domai... 321 1e-87
AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helic... 281 9e-76
AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helic... 265 7e-71
AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein / ... 250 3e-66
AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein / ... 250 4e-66
AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helic... 234 1e-61
AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helic... 225 8e-59
AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helic... 220 4e-57
AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domai... 200 4e-51
AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosph... 189 6e-48
AT1G61140.2 | Symbols: EDA16 | SNF2 domain-containing protein / ... 152 6e-37
AT2G40770.1 | Symbols: | zinc ion binding;DNA binding;helicases... 108 1e-23
AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORW... 107 4e-23
AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 | chr5:25... 87 3e-17
AT3G57300.2 | Symbols: INO80 | INO80 ortholog | chr3:21199612-21... 86 1e-16
AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog | chr3:21... 86 1e-16
AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator | chr3:... 81 3e-15
AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic ac... 80 4e-15
AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA ... 80 5e-15
AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containi... 80 6e-15
AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDD... 80 8e-15
AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 | c... 79 2e-14
AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 | c... 79 2e-14
AT5G19310.1 | Symbols: | Homeotic gene regulator | chr5:6498906... 77 4e-14
AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helic... 77 4e-14
AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 | chr2:5544... 77 5e-14
AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 77 5e-14
AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 77 5e-14
AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 77 6e-14
AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helic... 76 8e-14
AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 75 3e-13
AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 74 3e-13
AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 74 3e-13
AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 | chr2:8129... 73 7e-13
AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 | chr3:6652799-6... 71 3e-12
AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 ... 71 3e-12
AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 | chr3:88... 70 4e-12
AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 | chr1:16... 70 5e-12
AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containi... 70 6e-12
AT3G54460.1 | Symbols: | SNF2 domain-containing protein / helic... 69 2e-11
AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putat... 67 6e-11
AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putat... 67 7e-11
AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleosid... 66 9e-11
AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside triph... 66 9e-11
AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside triph... 66 9e-11
AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside triph... 66 9e-11
AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin re... 65 2e-10
AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr... 65 2e-10
AT5G20420.1 | Symbols: CHR42 | chromatin remodeling 42 | chr5:68... 65 2e-10
AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 | chr2:91... 64 4e-10
AT1G48310.1 | Symbols: CHR18, CHA18 | chromatin remodeling facto... 64 4e-10
AT3G42670.1 | Symbols: CHR38, CLSY | chromatin remodeling 38 | c... 64 4e-10
AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 58 2e-08
AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 58 2e-08
AT4G28270.1 | Symbols: ATRMA2, RMA2 | RING membrane-anchor 2 | c... 58 2e-08
AT3G58030.4 | Symbols: | RING/U-box superfamily protein | chr3:... 54 5e-07
AT3G58030.3 | Symbols: | RING/U-box superfamily protein | chr3:... 54 5e-07
AT3G58030.2 | Symbols: | RING/U-box superfamily protein | chr3:... 54 5e-07
AT3G58030.1 | Symbols: | RING/U-box superfamily protein | chr3:... 54 5e-07
AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containin... 54 5e-07
AT2G44950.1 | Symbols: RDO4, HUB1 | histone mono-ubiquitination ... 52 2e-06
AT2G23780.1 | Symbols: | RING/U-box superfamily protein | chr2:... 52 2e-06
AT1G19310.1 | Symbols: | RING/U-box superfamily protein | chr1:... 51 3e-06
AT3G07200.2 | Symbols: | RING/U-box superfamily protein | chr3:... 51 3e-06
AT3G07200.1 | Symbols: | RING/U-box superfamily protein | chr3:... 51 3e-06
AT5G48655.3 | Symbols: | RING/U-box superfamily protein | chr5:... 50 8e-06
AT5G48655.1 | Symbols: | RING/U-box superfamily protein | chr5:... 50 8e-06
AT5G48655.2 | Symbols: | RING/U-box superfamily protein | chr5:... 50 8e-06
>AT5G05130.1 | Symbols: | DNA/RNA helicase protein |
chr5:1512173-1514918 FORWARD LENGTH=862
Length = 862
Score = 615 bits (1586), Expect = e-176, Method: Compositional matrix adjust.
Identities = 300/502 (59%), Positives = 376/502 (74%), Gaps = 6/502 (1%)
Query: 293 DMESDATLIVCTPSAMSTWVAQLEEHTLRGALKTYIYYGDRRTGDAEELKKYDVVLTTYS 352
++ TLIVC PS +S W+ QLEEHT+ G LK Y+Y+G RT D EL KYD+VLTTY
Sbjct: 335 NVSQKTTLIVCPPSVISAWITQLEEHTVPGILKVYMYHGGERTDDVNELMKYDIVLTTYG 394
Query: 353 TLANELRLAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTGTLVQNGY 412
TLA E ++PVK++ W R++LDEAHTIKN NA QS+ V LKA RRWAVTGT +QNG
Sbjct: 395 TLAVEESWEDSPVKKMEWLRIILDEAHTIKNANAQQSRVVCKLKASRRWAVTGTPIQNGS 454
Query: 413 SDLFSLMAFLRFEPFSIKNYWQSLVQRPLSQGNARGLNRLQVLMAAISLRRTKEMSSVGL 472
DL+SLMAFLRFEPFSIK+YWQSL+QRPL QGN +GL+RLQVLMA ISLRRTKE S +GL
Sbjct: 455 FDLYSLMAFLRFEPFSIKSYWQSLIQRPLGQGNKKGLSRLQVLMATISLRRTKEKSLIGL 514
Query: 473 PLKTIETHHIELSAEERKMYDEVKEEADAILLRYGSSEGLVYSYSAVISMILRLRQICTD 532
P KT+ET ++ELS EER++YD ++ EA ++ ++ L+ +YS V+S+ILRLRQ+C D
Sbjct: 515 PPKTVETCYVELSPEERQLYDHMEGEAKGVVQNLINNGSLMRNYSTVLSIILRLRQLCDD 574
Query: 533 FALCPSDFKSHLLPSSDIEDVSKNPELLQTLVRILQDGEDFECPICISPPTDIVITCCAH 592
+LCP + +S S+ +EDV+ PELLQ LV LQDGEDF+CPICISPPT+I+IT CAH
Sbjct: 575 MSLCPPELRS-FTTSTSVEDVTDKPELLQKLVAALQDGEDFDCPICISPPTNIIITRCAH 633
Query: 593 IFCQPCILKTLQRSNPRCPLCRRSLSESDLFSA---PPELSNVDTTELCSSEKGLSTKAF 649
IFC+ CIL+TLQRS P CPLCR SL++SDL++A PP+ SN D + SS K A
Sbjct: 634 IFCRACILQTLQRSKPLCPLCRGSLTQSDLYNAPPPPPDSSNTDGEDAKSSTKSSKVSA- 692
Query: 650 TLIKLLTESRDQDPTAKSVVFSQFSKXXXXXXXXXKAAGFKTLRLDGTMNAKQRANVIEQ 709
L+ LL SR ++P KSVVFSQF K KAAGF LRLDG M K+R VI +
Sbjct: 693 -LLSLLMASRQENPNTKSVVFSQFRKMLLLLETPLKAAGFTILRLDGAMTVKKRTQVIGE 751
Query: 710 FQGSEKDGPMVLLASLRTSSTGINLTAASRVYLMEPWWNTGVEEQAIDRVHRIGQKEAVK 769
F E GP+VLLASL+ S TGINLTAASRVYL +PWWN VEEQA+DR+HRIGQK+ VK
Sbjct: 752 FGNPELTGPVVLLASLKASGTGINLTAASRVYLFDPWWNPAVEEQAMDRIHRIGQKQEVK 811
Query: 770 VVRLIAQNSIEEKILMLRERKQ 791
++R+IA+NSIEE++L L+++K+
Sbjct: 812 MIRMIARNSIEERVLELQQKKK 833
Score = 312 bits (799), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 147/245 (60%), Positives = 182/245 (74%), Gaps = 1/245 (0%)
Query: 6 DSSQQQHHLSQWDTYLVGFVTANIVGLKYYAGTISGREFVGLIREPHNAYDPNAIKVLNT 65
+ SQQQ ++YL+GFV ANIVGLKYY+G I+GRE VGL+REP N YD NAI+VLNT
Sbjct: 24 EPSQQQSQDCVSESYLIGFVIANIVGLKYYSGRINGREMVGLVREPLNVYDNNAIRVLNT 83
Query: 66 RALQVGHIERPAAAVLAPLIDSHLITVEGIVPNPRSAANKFRIPCQVHVFAHSSAFAAVT 125
R+ QVGHIER AAVLAP+IDSH I VEGIVPN RS +N++RIPCQ+HVFA A + V
Sbjct: 84 RSEQVGHIERTVAAVLAPMIDSHTIVVEGIVPNTRSNSNRYRIPCQIHVFAKLEASSTVK 143
Query: 126 DAFANSPLHLISQSDPSFTLSDSIAVKETRAENKFKSLDAVFKFVEENVK-NRVLQPLQP 184
+ L LIS+SD SF LS+++ VKE +S+D +FK V+ENVK L +P
Sbjct: 144 STISRGGLVLISESDTSFGLSEAVVVKEQMGNGDKRSVDKIFKLVDENVKLMGKLVAAEP 203
Query: 185 PPNVIKTELLQHQKEALGWLVHRETSGDLPPFWEERDNSFVNALTNYQTNTRPEPLRGGI 244
P VIK+EL HQKE LGWL+HRE SG+LPPFWEE+D F+N LTNY+++ RP+PLRGG+
Sbjct: 204 PREVIKSELFAHQKEGLGWLLHREKSGELPPFWEEKDGEFLNTLTNYRSDKRPDPLRGGV 263
Query: 245 FADAM 249
FAD M
Sbjct: 264 FADDM 268
>AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein |
chr5:7565374-7570871 REVERSE LENGTH=1029
Length = 1029
Score = 323 bits (827), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 190/530 (35%), Positives = 289/530 (54%), Gaps = 44/530 (8%)
Query: 294 MESDATLIVCTPSAMSTWVAQLEEHTLRGALKTYIYYGDRRTGDAEELKKYDVVLTTYST 353
+++ LIVC + + W ++E H G+L Y++YG R DA+ L + DVV+TTY
Sbjct: 487 LQNGGNLIVCPMTLLGQWKTEIEMHAKPGSLSVYVHYGQSRPKDAKLLSQSDVVITTYGV 546
Query: 354 LANELRLAEAP----VKRVVWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTGTLVQ 409
L +E + + V W+R+VLDEAHTIKN + S A AL A RRW +TGT +Q
Sbjct: 547 LTSEFSQENSADHEGIYAVRWFRIVLDEAHTIKNSKSQISLAAAALVADRRWCLTGTPIQ 606
Query: 410 NGYSDLFSLMAFLRFEPFSIKNYWQSLVQRPLSQGNARGLNRLQVLMAAISLRRTKEMSS 469
N DL+SL+ FLR EP+ +W LVQ+P +G+ RGL +Q ++ I LRRTK +
Sbjct: 607 NNLEDLYSLLRFLRIEPWGTWAWWNKLVQKPFEEGDERGLKLVQSILKPIMLRRTKSSTD 666
Query: 470 ------VGLPLKTIETHHIELSAEERKMYDEVKEEADAILLRYGSSEGLVYSYSAVISMI 523
+ LP + ELS ER YD + + + ++ ++++Y++++ ++
Sbjct: 667 REGRPILVLPPADARVIYCELSESERDFYDALFKRSKVKFDQFVEQGKVLHNYASILELL 726
Query: 524 LRLRQICTDFALCPSDFKSHLLPSSDIEDVSK------------------NPELLQTLVR 565
LRLRQ C L S + SD+ +SK + +Q +V
Sbjct: 727 LRLRQCCDHPFLVMS--RGDTAEYSDLNKLSKRFLSGKSSGLEREGKDVPSEAFVQEVVE 784
Query: 566 ILQDGEDFECPICISPPTDIVITCCAHIFCQPCILKTLQRSNPR-CPLCRRSLSESDLFS 624
L+ GE ECPIC+ D V+T CAH C+ C+L + + S CP+CR ++S+ +L +
Sbjct: 785 ELRKGEQGECPICLEALEDAVLTPCAHRLCRECLLASWRNSTSGLCPVCRNTVSKQELIT 844
Query: 625 APPELS-NVDTTELCSSEKGL--STKAFTLIKLLTESRDQDPTAKSVVFSQFSKXXXXXX 681
AP E VD EK S+K L++ L R +KS++FSQ++
Sbjct: 845 APTESRFQVDV------EKNWVESSKITALLEELEGLRSSG--SKSILFSQWTAFLDLLQ 896
Query: 682 XXXKAAGFKTLRLDGTMNAKQRANVIEQFQGSEKDGPMVLLASLRTSSTGINLTAASRVY 741
F +RLDGT++ +QR V+++F SE +VLL SL+ GINLTAAS +
Sbjct: 897 IPLSRNNFSFVRLDGTLSQQQREKVLKEF--SEDGSILVLLMSLKAGGVGINLTAASNAF 954
Query: 742 LMEPWWNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKILMLRERKQ 791
+M+PWWN VEEQA+ R+HRIGQ + VK+ R I + ++EE++ ++ RKQ
Sbjct: 955 VMDPWWNPAVEEQAVMRIHRIGQTKEVKIRRFIVKGTVEERMEAVQARKQ 1004
>AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domain |
chr5:17489327-17494830 FORWARD LENGTH=1277
Length = 1277
Score = 321 bits (823), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 211/656 (32%), Positives = 327/656 (49%), Gaps = 62/656 (9%)
Query: 186 PNVIKTELLQHQKEALGWLVHRETSGD-------LPPFWE------ERDNS-FVNALTNY 231
P+ + L +QK+AL W+ E D L P WE ER S ++N +
Sbjct: 609 PSTLTCNLRPYQKQALYWMSESEKGIDVEKAAETLHPCWEAYRICDERAPSIYLNIFSGE 668
Query: 232 QTNTRP---EPLRGGIFADAMXXXXXXXXXXXXXXXXXRR--ENAK------RGRKRTRN 280
T P + RGGI ADAM R EN KR R
Sbjct: 669 ATIQFPTATQMARGGILADAMGLGKTVMTIALILARPGRGNPENEDVLVADVNADKRNRK 728
Query: 281 XXXXXXXXXXXEDMESDATLIVCTPSAMSTWVAQLEEHTLRGALKTYIYYGDRRTGDAEE 340
+ TLI+C + +S W +LE H+ + +YYG RT DA+
Sbjct: 729 EIHMALTTVKAKG----GTLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRTHDAKA 784
Query: 341 LKKYDVVLTTYSTLANELR--LAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAVIALKAK 398
+ +DVVLTTY L + + +A + R+ W+R+VLDEAHTIK+ ++A L +
Sbjct: 785 IASHDVVLTTYGVLTSAYKQDMANSIFHRIDWYRIVLDEAHTIKSWKTQAAKATFELSSH 844
Query: 399 RRWAVTGTLVQNGYSDLFSLMAFLRFEPFSIKNYWQSLVQRPLSQGNARGLNRLQVLMAA 458
RW +TGT +QN DL+SL+ FL EP+ +W L+Q+P G+ RGL ++ ++
Sbjct: 845 CRWCLTGTPLQNKLEDLYSLLCFLHVEPWCNWAWWSKLIQKPYENGDPRGLKLIKAILRP 904
Query: 459 ISLRRTKEMSS------VGLPLKTIETHHIELSAEERKMYDEVKEEADAILLRYGSSEGL 512
+ LRRTKE + LP ++ E S ER Y + + + ++ + +
Sbjct: 905 LMLRRTKETRDKEGSLILELPPTDVQVIECEQSEAERDFYTALFKRSKVQFDQFVAQGKV 964
Query: 513 VYSYSAVISMILRLRQICTDFALCPSDFKSHLLPSSDIEDVSK-----NPE--------- 558
+++Y+ ++ ++LRLRQ C L S S +D++ +++ NP+
Sbjct: 965 LHNYANILELLLRLRQCCNHPFLVMSRADSQQY--ADLDSLARRFLDNNPDSVSQNAPSR 1022
Query: 559 -LLQTLVRILQDGEDFECPICISPPTDIVITCCAHIFCQPCILKTLQR-SNPRCPLCRRS 616
++ +++ L+DG ECPIC+ D V+T CAH C+ C+L + + S CP+CR
Sbjct: 1023 AYIEEVIQDLRDGNSKECPICLESADDPVLTPCAHRMCRECLLTSWRSPSCGLCPICRTI 1082
Query: 617 LSESDLFSAPPE-LSNVDTTELCSSEKGLSTKAFTLIKLLTESRDQDPTAKSVVFSQFSK 675
L ++L S P + + VD + S+K L+K L + + KS+VFSQ++
Sbjct: 1083 LKRTELISCPTDSIFRVDVVKNWKE----SSKVSELLKCLEKIKKSGSGEKSIVFSQWTS 1138
Query: 676 XXXXXXXXXKAAGFKTLRLDGTMNAKQRANVIEQFQGSEKDGPMVLLASLRTSSTGINLT 735
+ GF+ LR DG + K R V+++F +E +LL SL+ G+NLT
Sbjct: 1139 FLDLLEIPLRRRGFEFLRFDGKLAQKGREKVLKEF--NETKQKTILLMSLKAGGVGLNLT 1196
Query: 736 AASRVYLMEPWWNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKILMLRERKQ 791
AAS V+LM+PWWN VEEQAI R+HRIGQK V V R I ++++EE++ ++ RKQ
Sbjct: 1197 AASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQVQARKQ 1252
>AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr1:3703934-3709302 REVERSE LENGTH=1226
Length = 1226
Score = 281 bits (720), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 214/726 (29%), Positives = 318/726 (43%), Gaps = 132/726 (18%)
Query: 184 PPPNVIKTELLQHQKEALGWLVHRETSGDLPPFWEERDNSFVNALTNYQTNTRPEPLRGG 243
PP V+ LL+HQ+ AL W+ +ETSG+ P GG
Sbjct: 533 PPDGVLAVSLLRHQRIALSWMSQKETSGN--------------------------PCFGG 566
Query: 244 IFADAMXXXXXXXXXXXXXXXXXR-----RENAKRGR-KRTRNXXXXXXXXXXXEDM--- 294
I AD E++K G ++ + ED
Sbjct: 567 ILADDQGLGKTVSTIALILTERSTPYLPCEEDSKNGGCNQSDHSQVVFNENKVVEDSLCK 626
Query: 295 ----ESDATLIVCTPSAMSTWVAQLEEH-TLRGALKTYIYYGDRRTGDAEELKKYDVVLT 349
+ TLIVC S M W +L + TL L +Y+G RT D EL KYDVV+T
Sbjct: 627 MRGRPAAGTLIVCPTSLMRQWADELRKKVTLEAHLSVLVYHGCSRTKDPHELAKYDVVIT 686
Query: 350 TYSTLANE-------LRLAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWA 402
TYS ++ + P+ +V W+RVVLDEA +IKN S A L AKRRW
Sbjct: 687 TYSLVSKRKHMDCEPVEFLSGPLAQVSWFRVVLDEAQSIKNYKTQASIACSGLHAKRRWC 746
Query: 403 VTGTLVQNGYSDLFSLMAFLRFEPFSIKNYWQSLVQRPLSQGNARGLNRLQVLMAAISLR 462
++GT +QN +DL+S FL+++P+S + ++ P+S G LQ ++ + LR
Sbjct: 747 LSGTPIQNSIADLYSYFRFLKYDPYSSYQTFCETIKNPISSYPGEGYKTLQAILKKVMLR 806
Query: 463 RTKEM-----SSVGLPLKTIETHHIELSAEERKMYDEVKEEADAILLRYGSSEGLVYSYS 517
RTK+ + LP K+IE ++ + EER Y +++ ++ Y + + +Y
Sbjct: 807 RTKDTLLDGKPVISLPPKSIELRRVDFTKEERDFYSKLECDSRDQFKEYAEAGTVKQNYV 866
Query: 518 AVISMILRLRQICTDFALCPSDFKSHLLPSSDIEDVSKNP-ELLQTLVRILQDGEDFECP 576
++ M+LRLRQ C S L SS E V K P E L L+ L+ C
Sbjct: 867 NILLMLLRLRQACGH-----PLLVSSLSWSSSAEMVKKLPYEKLTFLLHRLEASLAI-CG 920
Query: 577 ICISPPTDIVITCCAHIFCQPCILKTLQRSNPRCPL--CRRSLSESDLFS---------- 624
IC P D V++ C H+FC CI + L R N +CPL C+ L S LFS
Sbjct: 921 ICNVAPKDAVVSLCGHVFCNQCICECLTRDNNQCPLSYCKVGLEISSLFSRETLENAMLD 980
Query: 625 -----APPELSNVD---TTELCSSEKGLSTKAFTLIKLLTE-SRDQDPTA---------- 665
AP + + D + E C + S+K + +L SR Q P
Sbjct: 981 LHKLDAPCDRTTSDPVGSGEPCENLPCGSSKIKAALDILQSLSRPQSPATVMNDVNQSSE 1040
Query: 666 --------------------------------KSVVFSQFSKXXXXXXXXXKAAGFKTLR 693
K++VF+Q++K K++G + R
Sbjct: 1041 NGENNQQLDKSFSLPATPAKSSVGGVVNVAGEKAIVFTQWTKMLDLLEAGLKSSGIQYRR 1100
Query: 694 LDGTMNAKQRANVIEQFQGSEKDGPMVLLASLRTSSTGINLTAASRVYLMEPWWNTGVEE 753
DG M R ++ F M++ SL+ +S G+N+ AA V +++ WWN E+
Sbjct: 1101 FDGKMTVPARDAAVQDFNTLPDVSVMIM--SLKAASLGLNMVAACHVIMLDLWWNPTTED 1158
Query: 754 QAIDRVHRIGQKEAVKVVRLIAQNSIEEKILML--RERKQARKGFGMGMD------MVVD 805
QAIDR HRIGQ VKVVR ++++E++IL L ++RK FG + + V+
Sbjct: 1159 QAIDRAHRIGQTRPVKVVRFTVKDTVEDRILALQQKKRKMVASAFGEHENGSRESHLSVE 1218
Query: 806 DLRFLL 811
DL +L
Sbjct: 1219 DLNYLF 1224
>AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr1:3703934-3709302 REVERSE LENGTH=1269
Length = 1269
Score = 265 bits (678), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 215/770 (27%), Positives = 319/770 (41%), Gaps = 176/770 (22%)
Query: 184 PPPNVIKTELLQHQKEALGWLVHRETSGDLPPFWEERDNSFVNALTNYQTNTRPEPLRGG 243
PP V+ LL+HQ+ AL W+ +ETSG+ P GG
Sbjct: 532 PPDGVLAVSLLRHQRIALSWMSQKETSGN--------------------------PCFGG 565
Query: 244 IFADAMXXXXXXXXXXXXXXXXXR-----RENAKRGR-KRTRNXXXXXXXXXXXEDM--- 294
I AD E++K G ++ + ED
Sbjct: 566 ILADDQGLGKTVSTIALILTERSTPYLPCEEDSKNGGCNQSDHSQVVFNENKVVEDSLCK 625
Query: 295 ----ESDATLIVCTPSAMSTWVAQLEEH-TLRGALKTYIYYGDRRTGDAEELKKYDVVLT 349
+ TLIVC S M W +L + TL L +Y+G RT D EL KYDVV+T
Sbjct: 626 MRGRPAAGTLIVCPTSLMRQWADELRKKVTLEAHLSVLVYHGCSRTKDPHELAKYDVVIT 685
Query: 350 TYSTLANEL--------------------------------------------------- 358
TYS ++ E+
Sbjct: 686 TYSLVSVEVPKQPRDRADEEKGGIHDGGVESVGFGSNKKDLPNSQKKGTKKRKHMDCEPV 745
Query: 359 RLAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTGTLVQNGYSDLFSL 418
P+ +V W+RVVLDEA +IKN S A L AKRRW ++GT +QN +DL+S
Sbjct: 746 EFLSGPLAQVSWFRVVLDEAQSIKNYKTQASIACSGLHAKRRWCLSGTPIQNSIADLYSY 805
Query: 419 MAFLRFEPFSIKNYWQSLVQRPLSQGNARGLNRLQVLMAAISLRRTKEM-----SSVGLP 473
FL+++P+S + ++ P+S G LQ ++ + LRRTK+ + LP
Sbjct: 806 FRFLKYDPYSSYQTFCETIKNPISSYPGEGYKTLQAILKKVMLRRTKDTLLDGKPVISLP 865
Query: 474 LKTIETHHIELSAEERKMYDEVKEEADAILLRYGSSEGLVYSYSAVISMILRLRQICTDF 533
K+IE ++ + EER Y +++ ++ Y + + +Y ++ M+LRLRQ C
Sbjct: 866 PKSIELRRVDFTKEERDFYSKLECDSRDQFKEYAEAGTVKQNYVNILLMLLRLRQACGH- 924
Query: 534 ALCPSDFKSHLLPSSDIEDVSKNP-ELLQTLVRILQDGEDFECPICISPPTDIVITCCAH 592
S L SS E V K P E L L+ L+ C IC P D V++ C H
Sbjct: 925 ----PLLVSSLSWSSSAEMVKKLPYEKLTFLLHRLEASLAI-CGICNVAPKDAVVSLCGH 979
Query: 593 IFCQPCILKTLQRSNPRCPL--CRRSLSESDLFS---------------APPELSNVD-- 633
+FC CI + L R N +CPL C+ L S LFS AP + + D
Sbjct: 980 VFCNQCICECLTRDNNQCPLSYCKVGLEISSLFSRETLENAMLDLHKLDAPCDRTTSDPV 1039
Query: 634 -TTELCSSEKGLSTKAFTLIKLLTE-SRDQDPTA-------------------------- 665
+ E C + S+K + +L SR Q P
Sbjct: 1040 GSGEPCENLPCGSSKIKAALDILQSLSRPQSPATVMNDVNQSSENGENNQQLDKSFSLPA 1099
Query: 666 ----------------KSVVFSQFSKXXXXXXXXXKAAGFKTLRLDGTMNAKQRANVIEQ 709
K++VF+Q++K K++G + R DG M R ++
Sbjct: 1100 TPAKSSVGGVVNVAGEKAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQD 1159
Query: 710 FQGSEKDGPMVLLASLRTSSTGINLTAASRVYLMEPWWNTGVEEQAIDRVHRIGQKEAVK 769
F M++ SL+ +S G+N+ AA V +++ WWN E+QAIDR HRIGQ VK
Sbjct: 1160 FNTLPDVSVMIM--SLKAASLGLNMVAACHVIMLDLWWNPTTEDQAIDRAHRIGQTRPVK 1217
Query: 770 VVRLIAQNSIEEKILML--RERKQARKGFGMGMD------MVVDDLRFLL 811
VVR ++++E++IL L ++RK FG + + V+DL +L
Sbjct: 1218 VVRFTVKDTVEDRILALQQKKRKMVASAFGEHENGSRESHLSVEDLNYLF 1267
>AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22539756 REVERSE
LENGTH=1122
Length = 1122
Score = 250 bits (638), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 174/624 (27%), Positives = 278/624 (44%), Gaps = 123/624 (19%)
Query: 298 ATLIVCTPSAMSTWVAQLEEH-TLRGALKTYIYYGDRRTGDAEELKKYDVVLTTYSTLAN 356
TL+VC S M W +L + T L +Y+G RT D EL KYDVV+TT+S ++
Sbjct: 508 GTLVVCPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTKDPHELAKYDVVVTTFSIVSM 567
Query: 357 EL------------------------------------------------RLAEAPVKRV 368
E+ P+ +V
Sbjct: 568 EVPKQPLVDDEDEEKDGVHDGGTAATGFCSNKKRKYPPDSKKKGSKKKKVEFLSGPLAKV 627
Query: 369 VWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTGTLVQNGYSDLFSLMAFLRFEPFS 428
W+RVVLDEA +IKN ++A L+AKRRW ++GT +QN DL+S FL+++P+S
Sbjct: 628 SWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYS 687
Query: 429 IKNYWQSLVQRPLSQGNARGLNRLQVLMAAISLRRTK-----EMSSVGLPLKTIETHHIE 483
+ S ++ P+++ +G +LQ ++ + LRRTK + LP K+IE ++
Sbjct: 688 SYVLFCSTIKNPITRNPVKGYQKLQAILKTVMLRRTKGSLLDGKPIISLPPKSIELRKVD 747
Query: 484 LSAEERKMYDEVKEEADAILLRYGSSEGLVYSYSAVISMILRLRQICTDFALCPSDFKSH 543
+ EER Y +++ E+ Y + + +Y ++ M+LRLRQ C L ++
Sbjct: 748 FTVEERDFYSKLEAESRTQFREYAEAGTVKQNYVNILLMLLRLRQACDHPLLVNGEYS-- 805
Query: 544 LLPSSDIEDVSKNPELLQTLVRILQDGEDFECPICISPPTDIVITCCAHIFCQPCILKTL 603
S + K +I D C IC P D V + C H+FC+ CI + L
Sbjct: 806 FTWESSVGLAKK---------QIQSDASLAICGICNDAPEDAVASVCGHVFCKQCIYERL 856
Query: 604 QRSNPRCPL--CRRSLSESDLFS------APPELSNVDTTEL---CSSEK---GLS--TK 647
+ CP C L+ S L S A P++ T+ CS E G S
Sbjct: 857 TGDSNHCPFANCNVRLTISSLSSKTRLDDAMPDMQERATSNSLSPCSDEDLPYGSSKIKA 916
Query: 648 AFTLIKLLTESRDQDPT--------------------------------AKSVVFSQFSK 675
A +++ L ++ D + K++VFSQ++K
Sbjct: 917 ALEILQSLPKAHDLTDSNQISENREYSGLSITPVKNEGMSVDVPIKVAGEKAIVFSQWTK 976
Query: 676 XXXXXXXXXKAAGFKTLRLDGTMNAKQRANVIEQFQGSEKDGPMVLLASLRTSSTGINLT 735
++ + RLDGTM+ R ++ F + V++ SL+ +S G+N+
Sbjct: 977 MLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTLPE--VTVMIMSLKAASLGLNMV 1034
Query: 736 AASRVYLMEPWWNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKILMLRERKQARKG 795
AA V +++ WWN E+QAIDR HRIGQ V VVR ++++E++IL L+++K+
Sbjct: 1035 AACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDTVEDRILALQQKKRMMVA 1094
Query: 796 FGMGMD--------MVVDDLRFLL 811
G D + V+DL +L
Sbjct: 1095 SAFGEDEKGSRQSHLTVEDLSYLF 1118
>AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22540610 REVERSE
LENGTH=1280
Length = 1280
Score = 250 bits (638), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 174/624 (27%), Positives = 278/624 (44%), Gaps = 123/624 (19%)
Query: 298 ATLIVCTPSAMSTWVAQLEEH-TLRGALKTYIYYGDRRTGDAEELKKYDVVLTTYSTLAN 356
TL+VC S M W +L + T L +Y+G RT D EL KYDVV+TT+S ++
Sbjct: 666 GTLVVCPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTKDPHELAKYDVVVTTFSIVSM 725
Query: 357 EL------------------------------------------------RLAEAPVKRV 368
E+ P+ +V
Sbjct: 726 EVPKQPLVDDEDEEKDGVHDGGTAATGFCSNKKRKYPPDSKKKGSKKKKVEFLSGPLAKV 785
Query: 369 VWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTGTLVQNGYSDLFSLMAFLRFEPFS 428
W+RVVLDEA +IKN ++A L+AKRRW ++GT +QN DL+S FL+++P+S
Sbjct: 786 SWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYS 845
Query: 429 IKNYWQSLVQRPLSQGNARGLNRLQVLMAAISLRRTK-----EMSSVGLPLKTIETHHIE 483
+ S ++ P+++ +G +LQ ++ + LRRTK + LP K+IE ++
Sbjct: 846 SYVLFCSTIKNPITRNPVKGYQKLQAILKTVMLRRTKGSLLDGKPIISLPPKSIELRKVD 905
Query: 484 LSAEERKMYDEVKEEADAILLRYGSSEGLVYSYSAVISMILRLRQICTDFALCPSDFKSH 543
+ EER Y +++ E+ Y + + +Y ++ M+LRLRQ C L ++
Sbjct: 906 FTVEERDFYSKLEAESRTQFREYAEAGTVKQNYVNILLMLLRLRQACDHPLLVNGEYS-- 963
Query: 544 LLPSSDIEDVSKNPELLQTLVRILQDGEDFECPICISPPTDIVITCCAHIFCQPCILKTL 603
S + K +I D C IC P D V + C H+FC+ CI + L
Sbjct: 964 FTWESSVGLAKK---------QIQSDASLAICGICNDAPEDAVASVCGHVFCKQCIYERL 1014
Query: 604 QRSNPRCPL--CRRSLSESDLFS------APPELSNVDTTEL---CSSEK---GLS--TK 647
+ CP C L+ S L S A P++ T+ CS E G S
Sbjct: 1015 TGDSNHCPFANCNVRLTISSLSSKTRLDDAMPDMQERATSNSLSPCSDEDLPYGSSKIKA 1074
Query: 648 AFTLIKLLTESRDQDPT--------------------------------AKSVVFSQFSK 675
A +++ L ++ D + K++VFSQ++K
Sbjct: 1075 ALEILQSLPKAHDLTDSNQISENREYSGLSITPVKNEGMSVDVPIKVAGEKAIVFSQWTK 1134
Query: 676 XXXXXXXXXKAAGFKTLRLDGTMNAKQRANVIEQFQGSEKDGPMVLLASLRTSSTGINLT 735
++ + RLDGTM+ R ++ F + V++ SL+ +S G+N+
Sbjct: 1135 MLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTLPE--VTVMIMSLKAASLGLNMV 1192
Query: 736 AASRVYLMEPWWNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKILMLRERKQARKG 795
AA V +++ WWN E+QAIDR HRIGQ V VVR ++++E++IL L+++K+
Sbjct: 1193 AACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDTVEDRILALQQKKRMMVA 1252
Query: 796 FGMGMD--------MVVDDLRFLL 811
G D + V+DL +L
Sbjct: 1253 SAFGEDEKGSRQSHLTVEDLSYLF 1276
>AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:18672828-18677365 FORWARD LENGTH=981
Length = 981
Score = 234 bits (598), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 185/669 (27%), Positives = 287/669 (42%), Gaps = 132/669 (19%)
Query: 270 NAKRGRKRTRNXXXXXXXXXXXEDMESDATLIVCTPSAMSTWVAQLEEH-TLRGALKTYI 328
N G K+ + + TLIVC S + W +L+E T L I
Sbjct: 316 NGDSGIKKAKGEEASTSTRKFNRKRPAAGTLIVCPASVVRQWARELDEKVTDEAKLSVLI 375
Query: 329 YYGDRRTGDAEEL----------------------------------------------K 342
Y+G RT D EL K
Sbjct: 376 YHGGNRTKDPIELAKYDVVMTTYAIVSNEVPKQPLVDDDENDEKNSEKYGLASGFSINKK 435
Query: 343 KYDVVLTTYSTLA----NELRLAEAP----VKRVVWWRVVLDEAHTIKNVNAGQSQAVIA 394
+ +VV TT + N + P + +V W+RVVLDEA TIKN ++A
Sbjct: 436 RKNVVGTTKKSKKKKGNNNAGDSSDPDSGTLAKVGWFRVVLDEAQTIKNHRTQVARACCG 495
Query: 395 LKAKRRWAVTGTLVQNGYSDLFSLMAFLRFEPFSIKNYWQSLVQRPLSQGNARGLNRLQV 454
L+AKRRW ++GT +QN DL+S FL+++P+++ + ++ P+S+ + +G +LQ
Sbjct: 496 LRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFCHQIKGPISRNSLQGYKKLQA 555
Query: 455 LMAAISLRRTKE-----MSSVGLPLKTIETHHIELSAEERKMYDEVKEEADAILLRYGSS 509
++ AI LRRTK + LP KTI ++ S EER Y +++ ++ + Y ++
Sbjct: 556 VLRAIMLRRTKGTLLDGQPIINLPPKTINLSQVDFSVEERSFYVKLESDSRSQFKAYAAA 615
Query: 510 EGLVYSYSAVISMILRLRQICTDFALCPSDFKSHLLPSSDIEDVSKNPELLQTLVRILQD 569
L +Y+ ++ M+LRLRQ C D + S + E V K P+ + LV +L
Sbjct: 616 GTLNQNYANILLMLLRLRQAC-DHPQLVKRYNSDSVGKVSEEAVKKLPK--EDLVSLLSR 672
Query: 570 GEDFE-CPICISPPTDIVITCCAHIFCQPCILKTLQRSNPRCPL--CRRSL------SES 620
E C +C PP D V+T C HIFC C+ + CP CR L S+S
Sbjct: 673 LESSPICCVCHDPPEDPVVTLCGHIFCYQCVSDYITGDEDTCPAPRCREQLAHDVVFSKS 732
Query: 621 DLFSAPPELSNVDTTELCSSEKGL-------STKAFTLIKLLTE---------------- 657
L S + ++E S +K + S+K ++ +L
Sbjct: 733 TLRSCVADDLGCSSSEDNSHDKSVFQNGEFSSSKIKAVLDILQSLSNQGTSNSTQNGQMA 792
Query: 658 SRDQDPTA---------------------------KSVVFSQFSKXXXXXXXXXKAAGFK 690
S Q P K+++FSQ++ +
Sbjct: 793 SSSQQPNDDDDDDDDDVTIVEKTSLKSTPSNGGPIKTIIFSQWTGMLDLVELSLIENSIE 852
Query: 691 TLRLDGTMNAKQRANVIEQFQGSEKDGPMVLLASLRTSSTGINLTAASRVYLMEPWWNTG 750
RLDGTM+ R +++F S V++ SL+ + G+N+ AA V L++ WWN
Sbjct: 853 FRRLDGTMSLIARDRAVKEF--SNDPDVKVMIMSLKAGNLGLNMIAACHVILLDLWWNPT 910
Query: 751 VEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKILMLRERKQARKGFGMGMD--------M 802
E+QAIDR HRIGQ V V R+ +N++E++IL L+E K+ G D +
Sbjct: 911 TEDQAIDRAHRIGQTRPVTVTRITIKNTVEDRILALQEEKRKMVASAFGEDHGGSSATRL 970
Query: 803 VVDDLRFLL 811
VDDL++L
Sbjct: 971 TVDDLKYLF 979
>AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr3:5652839-5655670 REVERSE LENGTH=638
Length = 638
Score = 225 bits (574), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 179/644 (27%), Positives = 272/644 (42%), Gaps = 129/644 (20%)
Query: 185 PPNVIKTELLQHQKEALGWLVHRETSGDLPPFWEERDNSFVNALTNYQTNTRPEPLRGGI 244
PP V+ L++HQK AL W+ +E R GGI
Sbjct: 45 PPGVLTVPLMRHQKIALNWMRKKEK--------------------------RSRHCLGGI 78
Query: 245 FADAMXXXXXXXXXXXXXXXXXRRENAKRGRKRTRNXXXXXXXXXXXEDMESDATLIVCT 304
AD + ++ +R RK S TLIVC
Sbjct: 79 LADDQGLGKTISTISLILLQKLKSQSKQRKRK----------------GQNSGGTLIVCP 122
Query: 305 PSAMSTWVAQLEEH-TLRGALKTYIYYGDRRTGDAEELKKYDVVLTTYSTLANE------ 357
S + W +++E + L +++G RT D E+ YDVV+TTY+ + NE
Sbjct: 123 ASVVKQWAREVKEKVSDEHKLSVLVHHGSHRTKDPTEIAIYDVVMTTYAIVTNEVPQNPM 182
Query: 358 ------LRLAEA------------PVKRVVWWRVVLDEAHTIKNVNAGQSQAVIALKAKR 399
+R E+ + RV W RVVLDEAHTIKN ++A +L+AKR
Sbjct: 183 LNRYDSMRGRESLDGSSLIQPHVGALGRVRWLRVVLDEAHTIKNHRTLIAKACFSLRAKR 242
Query: 400 RWAVTGTLVQNGYSDLFSLMAFLRFEPFSIKNYWQSLVQRPLSQGNARGLNRLQVLMAAI 459
RW +TGT ++N DL+S FLR+ P+++ N + ++ P+ + G +LQ ++ I
Sbjct: 243 RWCLTGTPIKNKVDDLYSYFRFLRYHPYAMCNSFHQRIKAPIDKKPLHGYKKLQAILRGI 302
Query: 460 SLRRTKEMSSVGLPLKTIETHHIELSAEERKMYDEVKEEADAILLRYGSSEGLVYSYSAV 519
LRRTKE S + +L R ++E AD L E + Y +
Sbjct: 303 MLRRTKEWS-----------FYRKLELNSRWKFEEY--AADGTL-----HEHMAY----L 340
Query: 520 ISMILRLRQICTDFALCPSDFKSHLLPSSDIED-VSKNPELLQTLVRILQDGEDFECPIC 578
+ M+LRLRQ C L + SH + + D V P + L C +C
Sbjct: 341 LVMLLRLRQACNHPQLV--NGYSHSDTTRKMSDGVRVAPRENLIMFLDLLKLSSTTCSVC 398
Query: 579 ISPPTDIVITCCAHIFCQPCILKTLQRSNPRCPL--CRRSLSESDLFSAPPELSNVDTTE 636
PP D V+T C H+FC C+ + N CP C L +F+ S ++ +
Sbjct: 399 SDPPKDPVVTLCGHVFCYECVSVNINGDNNTCPALNCHSQLKHDVVFTESAVRSCINDYD 458
Query: 637 LCSSEKGL-STKAFTLIKLLTESRDQDPTAKSVVFSQFSKXXXXXXXXXKAAGFKTLRLD 695
+ L +++ I+ S D+D + R
Sbjct: 459 DPEDKNALVASRRVYFIE--NPSCDRDSSV-------------------------ACRAR 491
Query: 696 GTMNAKQRANVIEQFQGSEKDGPMVLLASLRTSSTGINLTAASRVYLMEPWWNTGVEEQA 755
+ ++ + N I + +L SL+ + G+N+ AAS V L++ WWN E+QA
Sbjct: 492 QSRHSTNKDNSISGLVCA-------MLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQA 544
Query: 756 IDRVHRIGQKEAVKVVRLIAQNSIEEKILMLRERKQARKGFGMG 799
IDR HRIGQ AV V R+ +N++EE+IL L ERK+ +G
Sbjct: 545 IDRAHRIGQTRAVTVTRIAIKNTVEERILTLHERKRNIVASALG 588
>AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr3:6971352-6976340 FORWARD LENGTH=1047
Length = 1047
Score = 220 bits (560), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 152/515 (29%), Positives = 250/515 (48%), Gaps = 70/515 (13%)
Query: 363 APVKRVVWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTGTLVQNGYSDLFSLMAFL 422
P+ +V W+R+VLDEA TIKN +++ L+AKRRW ++GT +QN DL+S FL
Sbjct: 535 GPLGKVGWFRIVLDEAQTIKNYRTQMARSCCTLRAKRRWCLSGTPIQNTIDDLYSYFRFL 594
Query: 423 RFEPFSIKNYWQSLVQRPLSQGNARGLNRLQVLMAAISLRRTKEM-----SSVGLPLKTI 477
R++P+++ + S ++ P+S+ + +G +LQ ++ AI LRRTK + LP K +
Sbjct: 595 RYDPYAVYKSFYSTIKVPISRNSCQGYKKLQAVLRAIMLRRTKGTLLDGKPIINLPPKVV 654
Query: 478 ETHHIELSAEERKMYDEVKEEADAILLRYGSSEGLVYSYSAVISMILRLRQICTDFALCP 537
++ S ER Y +++ ++ + Y + L +Y+ ++ ++LRLRQ C D
Sbjct: 655 NLSQVDFSVAERSFYKKLEADSRSQFKAYADAGTLSQNYANILLLLLRLRQAC-DHPQLV 713
Query: 538 SDFKSHLLPSSDIEDVSKNP-ELLQTLVRILQDGEDFECPICISPPTDIVITCCAHIFCQ 596
+ S + V + P E L+ L+ C C PP V+T C HIFC
Sbjct: 714 KRYNSDPVGKVSEAAVRRLPREARSRLINRLESSSAI-CYECNEPPEKPVVTLCGHIFCY 772
Query: 597 PCILKTLQRSNPRCPL--CRRSLSESDLFSAPPELSNVDTTELCSS--EKGL-------- 644
C+L+ + CP+ C++ L+ +FS + CSS + GL
Sbjct: 773 ECVLEYITGDENTCPVPRCKQQLARDVVFSESSLRNCTSDDSGCSSSHDNGLDRSVFQKR 832
Query: 645 ---STKAFTLIKLL------------------TESR---DQDPT---------------- 664
S+K ++ +L + SR D D T
Sbjct: 833 DFCSSKIKAVLDILQSLSQPDSPNSAQHGQMPSSSRPYDDDDVTIVEPMRLHSSSPSQGA 892
Query: 665 AKSVVFSQFSKXXXXXXXXXKAAGFKTLRLDGTMNAKQRANVIEQFQGSEKDGPMVLLAS 724
K+++FSQ++ +G + RLDGTM+ R +++F S+K V+L S
Sbjct: 893 VKTIIFSQWTGMLDLVELRILESGIEFRRLDGTMSLAARDRAVKEF--SKKPDVKVMLMS 950
Query: 725 LRTSSTGINLTAASRVYLMEPWWNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKIL 784
L+ + G+N+ AA V L++ WWN E+QAIDR HRIGQ V V R+ ++++E++IL
Sbjct: 951 LKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRIL 1010
Query: 785 MLRERKQARKGFGMGMD--------MVVDDLRFLL 811
L+E K+ G + + VDDL++L
Sbjct: 1011 KLQEEKRTMVASAFGEEHGGSSATRLTVDDLKYLF 1045
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 298 ATLIVCTPSAMSTWVAQLEEH-TLRGALKTYIYYGDRRTGDAEELKKYDVVLTTYSTLAN 356
TLIVC S + W +L+E + L +Y+G RT D EL +YDVV+TTY+ + N
Sbjct: 415 GTLIVCPASVVRQWARELDEKVSEESKLSVLVYHGSNRTKDPNELAEYDVVVTTYAIVTN 474
Query: 357 E 357
E
Sbjct: 475 E 475
>AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domain |
chr1:1471624-1476067 REVERSE LENGTH=833
Length = 833
Score = 200 bits (508), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 140/502 (27%), Positives = 239/502 (47%), Gaps = 80/502 (15%)
Query: 368 VVWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTGTLVQNGYSDLFSLMAFLRFEPF 427
V W R++LDEAH IK + ++AV AL+A RWA++GT +QN +L+SL+ FL+ P+
Sbjct: 352 VKWNRIILDEAHYIKERRSNTARAVFALEATYRWALSGTPLQNRVGELYSLIRFLQIRPY 411
Query: 428 S----------IKNY-------------------WQSLVQRPLSQGNARGLNRLQVLMAA 458
S I +Y W V +P++ + GL + +++
Sbjct: 412 SYYFCKDCDCRILDYVAHQSCPHCPHNAVRHFCWWNKYVAKPITVYGSFGLGKRAMILLK 471
Query: 459 ------ISLRRTK--EMSSVGLPLKTIETHHIELSAEERKMYDEVKEEADAILLRYGSSE 510
I LRRTK + + LP + I L +E Y+ + + + A Y +
Sbjct: 472 HKVLKDILLRRTKLGRAADLALPPRIITLRRDTLDVKEFDYYESLYKNSQAEFNTYIEAG 531
Query: 511 GLVYSYSAVISMILRLRQICTDFALCPSDFKSHLLPSSDIEDVSKNPELLQTLVRILQDG 570
L+ +Y+ + ++ RLRQ +L+ S+ + N + ++
Sbjct: 532 TLMNNYAHIFDLLTRLRQAVD---------HPYLVVYSNSSGANAN--------LVDENK 574
Query: 571 EDFECPICISPPTDIVITCCAHIFCQPCILK-TLQRSNPRCPLCRRSLS-------ESDL 622
+ EC +C P D V+T CAH+FC+ C++ + CP C + L+ +++
Sbjct: 575 SEQECGLCHDPAEDYVVTSCAHVFCKACLIGFSASLGKVTCPTCSKLLTVDWTTKADTEH 634
Query: 623 FSAPPELSNVDTTELCSSEKGLSTKAFTLIKLLTES----RDQDPTAKSVVFSQFSKXXX 678
++ L + + + K + T I+ L E ++D +AK++VFSQF+
Sbjct: 635 KASKTTLKGFRASSILNRIKLDDFQTSTKIEALREEIRFMVERDGSAKAIVFSQFTSFLD 694
Query: 679 XXXXXXKAAGFKTLRLDGTMNAKQRANVIEQFQGSEKDGPMVLLASLRTSSTGINLTAAS 738
G ++L G+M R I +F+ E V L SL+ +NLT AS
Sbjct: 695 LINYTLGKCGVSCVQLVGSMTMAARDTAINKFK--EDPDCRVFLMSLKAGGVALNLTVAS 752
Query: 739 RVYLMEPWWNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKILMLRERKQ------- 791
V++M+PWWN VE QA DR+HRIGQ + ++VVR I +N++EE+IL L+++K+
Sbjct: 753 HVFMMDPWWNPAVERQAQDRIHRIGQYKPIRVVRFIIENTVEERILRLQKKKELVFEGTV 812
Query: 792 --ARKGFGMGMDMVVDDLRFLL 811
+++ G + +D+RFL
Sbjct: 813 GGSQEAIG---KLTEEDMRFLF 831
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 76/199 (38%), Gaps = 53/199 (26%)
Query: 170 VEENVKNRVLQPLQPPPNVIKTELLQHQKEALGWLVHRETSGDLPPFWEERDNSFVNALT 229
V+ + N V+ PP+ + LL++QKE L W +E S
Sbjct: 116 VDLDQHNAVIAETAEPPSDLIMPLLRYQKEFLAWATKQEQS------------------- 156
Query: 230 NYQTNTRPEPLRGGIFADAMXXXXXXXXXXXXXXXXXRRE--NAKRGRKRTRNXXXXXXX 287
+ GGI AD M RRE A+ G
Sbjct: 157 ----------VAGGILADEMGMGKTIQAISLVLA---RREVDRAQFGEA----------- 192
Query: 288 XXXXEDMESDATLIVCTPSAMSTWVAQLEEHTLRGALKTYIYYGDRRTGDAEELKKYDVV 347
+ TL++C A+S W+ ++ T G+ K +Y+G +R + +E YD V
Sbjct: 193 --------AGCTLVLCPLVAVSQWLNEIARFTSPGSTKVLVYHGAKRAKNIKEFMNYDFV 244
Query: 348 LTTYSTLANELRLAEAPVK 366
LTTYST+ +E R P K
Sbjct: 245 LTTYSTVESEYRRNIMPSK 263
>AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:576046-580299
FORWARD LENGTH=678
Length = 678
Score = 189 bits (480), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 170/641 (26%), Positives = 288/641 (44%), Gaps = 130/641 (20%)
Query: 175 KNRVLQPLQPPPNVIKTELLQHQKEALGWLVHRETSGDLPPFWEERDNSFVNALTNYQTN 234
+N V+ P + LL++QKE L W +E S
Sbjct: 116 QNAVIAEAAEQPLDLIIPLLKYQKEFLAWATIQELSA----------------------- 152
Query: 235 TRPEPLRGGIFADAMXXXXXXXXXXXXXXXXXRRENAKRGRKRTRNXXXXXXXXXXXEDM 294
+RGGI AD M RRE R ++R
Sbjct: 153 -----VRGGILADEMGMGKTIQAISLVLA---RRE---VDRAKSREAVGH---------- 191
Query: 295 ESDATLIVCTPSAMSTWVAQLEEHTLRGALKTYIYYGDRRTGDAEELKKYDVVLTTYSTL 354
TL++ P A+S W+ ++ T G+ + Y+G +R + ++L YD VLTT +
Sbjct: 192 ----TLVLVPPVALSQWLDEISRLTSPGSTRVLQYHGPKRDKNVQKLMNYDFVLTTSPIV 247
Query: 355 ANELRLAE------APVKRVVWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTGTLV 408
NE R E +P+ + W R+++DEAH IKN ++ ++AV AL+A RWA++GT +
Sbjct: 248 ENEYRKDEGVDETMSPLHSIKWNRIIVDEAHDIKNRSSRTAKAVFALEATYRWALSGTPL 307
Query: 409 QNGYSDLFSLM--AFLRF-----EPFSIKN----YWQSLVQRPLSQGNARGLN---RLQV 454
QN +L+SL+ +FL F F+ ++ + +++ + L GN L+ R++
Sbjct: 308 QNDVDELYSLVSYSFLNFFYSTYASFAFRHTHITFARNVTVKFLIGGNILPLSIPVRIEN 367
Query: 455 LMAAISLRRTKEMSSVGLPLKTIETHHIELSAEERKMYDEVKEEADAILLRYGSSEGLVY 514
+ A + ++ +S+G + LS E Y+ + + + Y + L+
Sbjct: 368 VPAVLIMQIN---TSLGGKRRD------ALSVVEADFYESLYKVSKTTFDGYIQAGTLMN 418
Query: 515 SYSAVISMILRLRQICTDFALC----PSDFKSHLLPSSDIEDVSKNPELLQTLVRILQDG 570
+Y+ + +++RLRQ L PS ++LL D +KN +
Sbjct: 419 NYAHIFGLLIRLRQAVDHPYLVSYSSPSGANANLL------DANKNEK------------ 460
Query: 571 EDFECPICISPPTDIVITCCAHIFCQPCILKTLQRSNPRCPLCRRSLSESDLFSAPPELS 630
EC P D +T H + S ++ F A L+
Sbjct: 461 ---ECGFGHDPSKDYFVTSSEH---------------------QASKTKLKGFRASSILN 496
Query: 631 NVDTTELCSSEKGLSTKAFTLIKLLTESRDQDPTAKSVVFSQFSKXXXXXXXXXKAAGFK 690
++ + +S K + + I+ + E +D +AK++VFSQF+ +G
Sbjct: 497 RINLDDFKTSTKIEALR--EEIRFMVE---RDWSAKAIVFSQFTSFLDLISYALGKSGVS 551
Query: 691 TLRLDGTMNAKQRANVIEQFQGSEKDGPMVLLASLRTSSTGINLTAASRVYLMEPWWNTG 750
++L G+M+ + ++ F+ E+ VLL SL+ +NLTAAS V++M+PWWN
Sbjct: 552 CVQLVGSMSKAAKDAALKNFK--EEPDCRVLLMSLQAGGVALNLTAASHVFMMDPWWNPA 609
Query: 751 VEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKILMLRERKQ 791
VE QA DR+HRIGQ + V+VVR I + ++EEKIL L+++K+
Sbjct: 610 VERQAQDRIHRIGQCKPVRVVRFIMEKTVEEKILTLQKKKE 650
>AT1G61140.2 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22536293-22540610 REVERSE
LENGTH=1022
Length = 1022
Score = 152 bits (385), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 137/287 (47%), Gaps = 54/287 (18%)
Query: 298 ATLIVCTPSAMSTWVAQLEEH-TLRGALKTYIYYGDRRTGDAEELKKYDVVLTTYSTLAN 356
TL+VC S M W +L + T L +Y+G RT D EL KYDVV+TT+S ++
Sbjct: 673 GTLVVCPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTKDPHELAKYDVVVTTFSIVSM 732
Query: 357 EL------------------------------------------------RLAEAPVKRV 368
E+ P+ +V
Sbjct: 733 EVPKQPLVDDEDEEKDGVHDGGTAATGFCSNKKRKYPPDSKKKGSKKKKVEFLSGPLAKV 792
Query: 369 VWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTGTLVQNGYSDLFSLMAFLRFEPFS 428
W+RVVLDEA +IKN ++A L+AKRRW ++GT +QN DL+S FL+++P+S
Sbjct: 793 SWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYS 852
Query: 429 IKNYWQSLVQRPLSQGNARGLNRLQVLMAAISLRRTK-----EMSSVGLPLKTIETHHIE 483
+ S ++ P+++ +G +LQ ++ + LRRTK + LP K+IE ++
Sbjct: 853 SYVLFCSTIKNPITRNPVKGYQKLQAILKTVMLRRTKGSLLDGKPIISLPPKSIELRKVD 912
Query: 484 LSAEERKMYDEVKEEADAILLRYGSSEGLVYSYSAVISMILRLRQIC 530
+ EER Y +++ E+ Y + + +Y ++ M+LRLRQ C
Sbjct: 913 FTVEERDFYSKLEAESRTQFREYAEAGTVKQNYVNILLMLLRLRQAC 959
>AT2G40770.1 | Symbols: | zinc ion binding;DNA
binding;helicases;ATP binding;nucleic acid binding |
chr2:17013535-17021315 REVERSE LENGTH=1664
Length = 1664
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 129/294 (43%), Gaps = 45/294 (15%)
Query: 294 MESDATLIVCTPSAMSTWVAQLEEHTLRGALKTYIYYGDRRTG-------DAEELKKYDV 346
+ + ATLIVC + W +++ HT G+L T IY G R D EL D+
Sbjct: 497 ISTGATLIVCPAPILPQWHSEITRHTRLGSLITCIYEGVRNASLSEEPMIDITELLNADI 556
Query: 347 VLTTYSTLANELR--------------------LAEAPVKRVVWWRVVLDEAHTIKNVNA 386
VLTTY L +L + P+ R+ WWR+ LDEA +++ A
Sbjct: 557 VLTTYDVLKEDLTHDFDRHDGDRHCLRFQKRYPVIPTPLTRIFWWRICLDEAQMVESNAA 616
Query: 387 GQSQAVIALKAKRRWAVTGTLVQNGYSDLFSLMAFLRFEPFSIKNYWQSLVQRPLSQGNA 446
++ + L K RW +TGT +Q DLF L+ FL+ PF + +W +++ P + +
Sbjct: 617 AATEMALRLYTKHRWCITGTPIQRKLDDLFGLLKFLKANPFDVSRWWIEVIRDPYERRDT 676
Query: 447 RGLNRLQVLMAAISLRRTK--EMSSVGLPLKTIETHHIELSAEERKMYD----------- 493
+ + + R +K + LP + ++ SA E Y
Sbjct: 677 KAMEFTHKFFKQVMWRSSKVHVADELQLPPQEECVSWLKFSAIEEHFYSRQHDTCVSYAR 736
Query: 494 EVKEEADAILLRYG--SSEGLVYSY---SAVISMILRLRQICTDFALCPSDFKS 542
EV E +L+ G SS+ + ++ + +++ +L+LRQ C + S +S
Sbjct: 737 EVIETLKRDILKRGHTSSDNPLVTHAEAAKLLNSLLKLRQACCHPQVGSSGLRS 790
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 105/248 (42%), Gaps = 33/248 (13%)
Query: 572 DFECPIC--ISPPTDIVITCCAHIFCQPCILKTLQRSNPR--------CPLCR-----RS 616
D CPIC I +V C H C C +R + + CP+CR R+
Sbjct: 1341 DEACPICHEILRNQKMVFQC-GHSTCCNCFFAMTERKSVQETLQKWVMCPICRQHTDVRN 1399
Query: 617 LSESD--LFSAPPELSNVDTTELCSSEKGLSTKAFTLIKLLTESRDQDPTAKSVVFSQFS 674
++ +D S+ + + D+ + TK + + + + DP K +VFS ++
Sbjct: 1400 IAYADDRRNSSSSDQDHKDSEASLVVQGSYGTKIEAVTRRILWIKSSDPQTKVLVFSSWN 1459
Query: 675 KXXXXXXXXXKAAGFKTLRLDGTMNAKQRANVIEQFQGSEKDGP------------MVLL 722
A +R+ G ++ I +F+GSEK+ VLL
Sbjct: 1460 DVLDVLEHAFAANSITCIRMKG---GRKSQTAISKFKGSEKETQKTNSHQKEEKSIQVLL 1516
Query: 723 ASLRTSSTGINLTAASRVYLMEPWWNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEK 782
++ + G+NL A V L+EP N E QA+ RVHRIGQ++ V R + ++EE
Sbjct: 1517 LLVQHGANGLNLLEAQHVILVEPLLNPAAEAQAVGRVHRIGQEKPTLVHRFLVSGTVEES 1576
Query: 783 ILMLRERK 790
I L K
Sbjct: 1577 IYKLNRNK 1584
>AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORWARD
LENGTH=862
Length = 862
Score = 107 bits (267), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 124/526 (23%), Positives = 216/526 (41%), Gaps = 78/526 (14%)
Query: 294 MESDA--TLIVCTPSAMSTWVAQLEEHTLRGALKTYIYYGDRRTGDAEELKK--YDVVLT 349
+ESD LI+C S + W ++ K +Y+G R E+LK +V++T
Sbjct: 194 LESDKGPVLIICPSSIIHNWESEFSRWA--SFFKVSVYHGSNRDMILEKLKARGVEVLVT 251
Query: 350 TYSTLANELRLAEAPVKRVVWWRVVL-DEAHTIKNVNAGQSQAVIALKAKRRWAVTGTLV 408
++ T + PV + W +V+ DEAH +KN + +A + +K K+R +TGT++
Sbjct: 252 SFDTFR-----IQGPVLSGINWEIVIADEAHRLKNEKSKLYEACLEIKTKKRIGLTGTVM 306
Query: 409 QNGYSDLFSLMAFLRFEPFSIKNYWQSLVQRPLSQGN-ARGLNRLQVLMAAISLRRTKEM 467
QN S+LF+L ++ + +++ PL G A R I+ +R + +
Sbjct: 307 QNKISELFNLFEWVAPGSLGTREHFRDFYDEPLKLGQRATAPERF----VQIADKRKQHL 362
Query: 468 SSVGLPLKTIETHHIELSAEERKMYDEVKEEADAILLRYGSSEGLVYSYSAVISMILRLR 527
S+ + + + + EE + + +E + + + + VY +++L
Sbjct: 363 GSL------LRKYMLRRTKEETIGHLMMGKEDNVVFCQMSQLQRRVYQ------RMIQLP 410
Query: 528 QI-CTDFALCPSDFKSHLLPSSDIEDVSKNPELLQTLVRILQDGEDFECPICISPPTDIV 586
+I C P S L S + + + L R DG D CP C+
Sbjct: 411 EIQCLVNKDNPCACGSPLKQSECCRRIVPDGTIWSYLHRDNHDGCD-SCPFCL------- 462
Query: 587 ITCCAHIFCQPCILKTLQ--------RSNPRC-PLCRRSLSE--SDLF----------SA 625
PC++K Q + NP+ P ++ +E S +F SA
Sbjct: 463 --------VLPCLMKLQQISNHLELIKPNPKDEPEKQKKDAEFVSTVFGTDIDLLGGISA 514
Query: 626 PPELSNVDTTELCSSEKGLSTKAFTLIKLLTESRDQDPTAKSVVFSQFSKXXXXXXXXXK 685
++ + C + L + I K ++FS +
Sbjct: 515 SKSFMDLSDVKHCGKMRALEKLMASWIS---------KGDKILLFSYSVRMLDILEKFLI 565
Query: 686 AAGFKTLRLDGTMNAKQRANVIEQFQGSEKDGPMVLLASLRTSSTGINLTAASRVYLMEP 745
G+ RLDG+ R ++++ F S V L S + G+NL +A+RV + +P
Sbjct: 566 RKGYSFARLDGSTPTNLRQSLVDDFNASP--SKQVFLISTKAGGLGLNLVSANRVVIFDP 623
Query: 746 WWNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKILMLRERKQ 791
WN + QA DR R GQK V V RL++ S+EE + + KQ
Sbjct: 624 NWNPSHDLQAQDRSFRYGQKRHVVVFRLLSAGSLEELVYTRQVYKQ 669
>AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 |
chr5:25592160-25598405 REVERSE LENGTH=1090
Length = 1090
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 84/166 (50%), Gaps = 10/166 (6%)
Query: 631 NVDTTELCSSEKGLSTKAFTLIKLLTESRDQDPTAKSV-VFSQFSKXXXXXXXXXKAAGF 689
NVDT + + +S K ++ LL + P V +FSQ K + G+
Sbjct: 717 NVDTDDFQTKNDSISCKLSFIMSLL---ENLIPEGHRVLIFSQTRKMLNLIQDSLTSNGY 773
Query: 690 KTLRLDGTMNAKQRANVIEQFQGSEKDGPMVLLASLRTSSTGINLTAASRVYLMEPWWNT 749
LR+DGT A R +E+FQ P+ LL S + G+ LT A RV +++P WN
Sbjct: 774 SFLRIDGTTKAPDRLKTVEEFQEGHV-APIFLLTS-QVGGLGLTLTKADRVIVVDPAWNP 831
Query: 750 GVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKILMLRERKQARKG 795
+ Q++DR +RIGQ + V V RL+ ++EEKI RKQ KG
Sbjct: 832 STDNQSVDRAYRIGQTKDVIVYRLMTSATVEEKIY----RKQVYKG 873
>AT3G57300.2 | Symbols: INO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1540
Length = 1540
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 8/163 (4%)
Query: 622 LFSAPPELSNVDTTELCSSEKGLSTKAFTLIKLLTESRDQDPTAKSVVFSQFSKXXXXXX 681
+F + P + + D +L + L T L +L + + ++F+Q +K
Sbjct: 1219 IFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAGNH------RVLLFAQMTKMLNILE 1272
Query: 682 XXXKAAGFKTLRLDGTMNAKQRANVIEQFQGSEKDGPMVLLASLRTSSTGINLTAASRVY 741
+K LRLDG+ R +++ FQ + V L S R GINLTAA V
Sbjct: 1273 DYMNYRKYKYLRLDGSSTIMDRRDMVRDFQ--HRSDIFVFLLSTRAGGLGINLTAADTVI 1330
Query: 742 LMEPWWNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKIL 784
E WN ++ QA+DR HR+GQ + V V RLI + ++EEKIL
Sbjct: 1331 FYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKIL 1373
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 121/261 (46%), Gaps = 38/261 (14%)
Query: 344 YDVVLTTYSTLANELRLAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWAV 403
+ +++T+Y L + E +RV W +VLDEA IK+ ++ + + +++ + R +
Sbjct: 725 FHILITSYQLLVTD----EKYFRRVKWQYMVLDEAQAIKSSSSIRWKTLLSFNCRNRLLL 780
Query: 404 TGTLVQNGYSDLFSLMAFLR---FEPFSIKNYWQSL-VQRPLSQG---NARGLNRLQVLM 456
TGT +QN ++L++L+ F+ F+ N W S ++ G N LNRL ++
Sbjct: 781 TGTPIQNNMAELWALLHFIMPMLFDNHDQFNEWFSKGIENHAEHGGTLNEHQLNRLHAIL 840
Query: 457 AAISLRRTKEMSSVGLPLKTIETHHIELSAEERKMYDEVKEEADAILLRYGSSEGLVYSY 516
LRR K+ L KT T H +LS+ ++ Y +K + L + S+ G
Sbjct: 841 KPFMLRRVKKDVVSELTTKTEVTVHCKLSSRQQAFYQAIKNKISLAEL-FDSNRGQFTDK 899
Query: 517 SA--VISMILRLRQICTDFALCPSDFKSHLL------------PSSDIEDVS-------- 554
+++++++LR++C L + S L P ++EDV
Sbjct: 900 KVLNLMNIVIQLRKVCNHPELFERNEGSSYLYFGVTSNSLLPHPFGELEDVHYSGGQNPI 959
Query: 555 --KNPELLQTLVRILQDGEDF 573
K P+LL +LQ+ E F
Sbjct: 960 IYKIPKLLHQ--EVLQNSETF 978
>AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1507
Length = 1507
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 8/163 (4%)
Query: 622 LFSAPPELSNVDTTELCSSEKGLSTKAFTLIKLLTESRDQDPTAKSVVFSQFSKXXXXXX 681
+F + P + + D +L + L T L +L + + ++F+Q +K
Sbjct: 1186 IFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAGNH------RVLLFAQMTKMLNILE 1239
Query: 682 XXXKAAGFKTLRLDGTMNAKQRANVIEQFQGSEKDGPMVLLASLRTSSTGINLTAASRVY 741
+K LRLDG+ R +++ FQ + V L S R GINLTAA V
Sbjct: 1240 DYMNYRKYKYLRLDGSSTIMDRRDMVRDFQ--HRSDIFVFLLSTRAGGLGINLTAADTVI 1297
Query: 742 LMEPWWNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKIL 784
E WN ++ QA+DR HR+GQ + V V RLI + ++EEKIL
Sbjct: 1298 FYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKIL 1340
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 142/316 (44%), Gaps = 51/316 (16%)
Query: 300 LIVCTPSAMSTWVAQLEEHTLRGALKTYIYYGD-------RRTGDAEELKKYD----VVL 348
L+V S ++ W ++ LKT Y+G R+ + + + + D +++
Sbjct: 639 LVVAPASVLNNWADEISRFC--PDLKTLPYWGGLQERTILRKNINPKRMYRRDAGFHILI 696
Query: 349 TTYSTLANELRLAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTGTLV 408
T+Y L + E +RV W +VLDEA IK+ ++ + + +++ + R +TGT +
Sbjct: 697 TSYQLLVTD----EKYFRRVKWQYMVLDEAQAIKSSSSIRWKTLLSFNCRNRLLLTGTPI 752
Query: 409 QNGYSDLFSLMAFLR---FEPFSIKNYWQSL-VQRPLSQG---NARGLNRLQVLMAAISL 461
QN ++L++L+ F+ F+ N W S ++ G N LNRL ++ L
Sbjct: 753 QNNMAELWALLHFIMPMLFDNHDQFNEWFSKGIENHAEHGGTLNEHQLNRLHAILKPFML 812
Query: 462 RRTKEMSSVGLPLKTIETHHIELSAEERKMYDEVKEEADAILLRYGSSEGLVYSYSA--V 519
RR K+ L KT T H +LS+ ++ Y +K + L + S+ G +
Sbjct: 813 RRVKKDVVSELTTKTEVTVHCKLSSRQQAFYQAIKNKISLAEL-FDSNRGQFTDKKVLNL 871
Query: 520 ISMILRLRQICTDFALCPSDFKSHLL------------PSSDIEDVS----------KNP 557
++++++LR++C L + S L P ++EDV K P
Sbjct: 872 MNIVIQLRKVCNHPELFERNEGSSYLYFGVTSNSLLPHPFGELEDVHYSGGQNPIIYKIP 931
Query: 558 ELLQTLVRILQDGEDF 573
+LL +LQ+ E F
Sbjct: 932 KLLHQ--EVLQNSETF 945
>AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator |
chr3:1802435-1807284 REVERSE LENGTH=1102
Length = 1102
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 10/138 (7%)
Query: 668 VVFSQFSKXXXXXXXXXKAAGFKTLRLDGTMNAKQRANVIEQFQGSEKDGP-MVLLASLR 726
++FSQ ++ +K LRLDGT QR +++QF +E D P + L S R
Sbjct: 733 LLFSQMTRLIDVLEIYLTLNDYKYLRLDGTTKTDQRGLLLKQF--NEPDSPYFMFLLSTR 790
Query: 727 TSSTGINLTAASRVYLMEPWWNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKILML 786
G+NL A V + + WN +++QA DR HRIGQK+ V+V L++ S+EE IL
Sbjct: 791 AGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVIL-- 848
Query: 787 RERKQARKGFGMGMDMVV 804
ER + + MG+D V
Sbjct: 849 -ERAKQK----MGIDAKV 861
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 135/281 (48%), Gaps = 30/281 (10%)
Query: 300 LIVCTPSAMSTWVAQLEEHTLRGALKTYIYYG--DRRTGDAEELK---KYDVVLTTYSTL 354
LIV + + WV + T ++ ++Y G + R E++ K++V++T Y +
Sbjct: 456 LIVAPKAVLPNWVNEFA--TWVPSIAAFLYDGRLEERKAIREKIAGEGKFNVLITHYDLI 513
Query: 355 ANELRLAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAVI-ALKAKRRWAVTGTLVQNGYS 413
+ +A +K++ W+ +++DE H +KN + ++ ++ + KRR +TGT +QN
Sbjct: 514 MRD----KAFLKKIEWYYMIVDEGHRLKNHESALAKTLLTGYRIKRRLLLTGTPIQNSLQ 569
Query: 414 DLFSLMAFLRFEPF-SIKNYWQSLVQRPLSQGNARG--------LNRLQVLMAAISLRRT 464
+L+SL+ FL F S++N+ + +GN ++RL ++ LRR
Sbjct: 570 ELWSLLNFLLPHIFNSVQNFEEWFNAPFADRGNVSLTDEEELLIIHRLHHVIRPFILRRK 629
Query: 465 KEMSSVGLPLKTIETHHIELSAEERKMYDEVKEEADAILLRYGSSEGLVYSYSAVISMIL 524
K+ LP KT ++SA ++ Y +V + + L+ GS + ++ ++ +
Sbjct: 630 KDEVEKFLPGKTQVILKCDMSAWQKVYYKQVTDMG-RVGLQTGSGKS-----KSLQNLTM 683
Query: 525 RLRQICTD-FALCPSDFKSHLLPSSDIEDVSKNPELLQTLV 564
+LR+ C + D+ ++ +I S ELL L+
Sbjct: 684 QLRKCCNHPYLFVGGDY--NMWKKPEIVRASGKFELLDRLL 722
>AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20104153 FORWARD
LENGTH=2129
Length = 2129
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 107/231 (46%), Gaps = 23/231 (9%)
Query: 299 TLIVCTPSAMSTWVAQLEEHTLRGALKTYIYYGDR--RTGDAEELKKYDVVLTTYSTLAN 356
++IVC + + W ++E++ L Y G R E+ ++V++T+Y +
Sbjct: 1540 SIIVCPSTLVGHWAFEIEKYIDLSLLSVLQYVGSAQDRVSLREQFNNHNVIITSYDVVRK 1599
Query: 357 ELRLAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTGTLVQNGYSDLF 416
++ + + W +LDE H IKN + + AV LKA+ R ++GT +QN +L+
Sbjct: 1600 DVDY----LTQFSWNYCILDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPIQNNIMELW 1655
Query: 417 SLMAFLRFEPFSIKNYWQSLVQRPL------------SQGNARGLNRLQVLMAAISLRRT 464
SL FL + +Q+ +PL ++ + L + LRRT
Sbjct: 1656 SLFDFLMPGFLGTERQFQASYGKPLLAARDPKCSAKDAEAGVLAMEALHKQVMPFLLRRT 1715
Query: 465 KEMSSVGLPLKTIETHHIELSAEERKMYDE-----VKEEADAILLRYGSSE 510
KE LP K I+ + +LS + K+Y++ K+E +I+ GS++
Sbjct: 1716 KEEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSSAKQEISSIIKVDGSAD 1766
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 692 LRLDGTMNAKQRANVIEQFQGSEKDGPMVLLASLRTSSTGINLTAASRVYLMEPWWNTGV 751
+RLDG++ ++R +++ F VLL + G+NLT+A + ME WN
Sbjct: 1892 MRLDGSVVPEKRFEIVKAFNSDPTID--VLLLTTHVGGLGLNLTSADTLVFMEHDWNPMR 1949
Query: 752 EEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKILMLRERK 790
+ QA+DR HR+GQK V V RLI + ++EEK++ L++ K
Sbjct: 1950 DHQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMSLQKFK 1988
>AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA
binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20103807 FORWARD
LENGTH=2045
Length = 2045
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 107/231 (46%), Gaps = 23/231 (9%)
Query: 299 TLIVCTPSAMSTWVAQLEEHTLRGALKTYIYYGDR--RTGDAEELKKYDVVLTTYSTLAN 356
++IVC + + W ++E++ L Y G R E+ ++V++T+Y +
Sbjct: 1509 SIIVCPSTLVGHWAFEIEKYIDLSLLSVLQYVGSAQDRVSLREQFNNHNVIITSYDVVRK 1568
Query: 357 ELRLAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTGTLVQNGYSDLF 416
++ + + W +LDE H IKN + + AV LKA+ R ++GT +QN +L+
Sbjct: 1569 DVDY----LTQFSWNYCILDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPIQNNIMELW 1624
Query: 417 SLMAFLRFEPFSIKNYWQSLVQRPL------------SQGNARGLNRLQVLMAAISLRRT 464
SL FL + +Q+ +PL ++ + L + LRRT
Sbjct: 1625 SLFDFLMPGFLGTERQFQASYGKPLLAARDPKCSAKDAEAGVLAMEALHKQVMPFLLRRT 1684
Query: 465 KEMSSVGLPLKTIETHHIELSAEERKMYDE-----VKEEADAILLRYGSSE 510
KE LP K I+ + +LS + K+Y++ K+E +I+ GS++
Sbjct: 1685 KEEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSSAKQEISSIIKVDGSAD 1735
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 692 LRLDGTMNAKQRANVIEQFQGSEKDGPMVLLASLRTSSTGINLTAASRVYLMEPWWNTGV 751
+RLDG++ ++R +++ F VLL + G+NLT+A + ME WN
Sbjct: 1861 MRLDGSVVPEKRFEIVKAFNSDPTID--VLLLTTHVGGLGLNLTSADTLVFMEHDWNPMR 1918
Query: 752 EEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKILMLRERK 790
+ QA+DR HR+GQK V V RLI + ++EEK++ L++ K
Sbjct: 1919 DHQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMSLQKFK 1957
>AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr3:4065636-4073992 FORWARD LENGTH=2055
Length = 2055
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 114/247 (46%), Gaps = 30/247 (12%)
Query: 300 LIVCTPSAMSTWVAQLEEHTLRGALKTYIYYGD------RRTGDAEELKKYDVVLTTYST 353
LIV S M W + + A K Y+G +R G +L + V +TTY
Sbjct: 589 LIVVPTSVMLNWETEFLKWC--PAFKILTYFGSAKERKLKRQG-WMKLNSFHVCITTYRL 645
Query: 354 LANELRLAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTGTLVQNGYS 413
+ + ++ KR W ++LDEAH IKN + + Q ++ +KRR +TGT +QN
Sbjct: 646 VIQDSKM----FKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLM 701
Query: 414 DLFSLMAFLRFEPFSIKNYWQSLVQRPLS---QG----NARGLNRLQVLMAAISLRRTKE 466
+L+SLM FL F ++ P++ +G N ++RL ++ LRR K
Sbjct: 702 ELWSLMHFLMPHVFQSHQEFKDWFCNPIAGMVEGQEKINKEVIDRLHNVLRPFLLRRLKR 761
Query: 467 MSSVGLPLKTIETHHIELSAEERKMYDE--VKEEADAILLRYGSSEGLVYSYSAVISMIL 524
LP K LS +R +Y++ E A L + G S+ +IS+I+
Sbjct: 762 DVEKQLPSKHEHVIFCRLSKRQRNLYEDFIASTETQATL-----TSG---SFFGMISIIM 813
Query: 525 RLRQICT 531
+LR++C
Sbjct: 814 QLRKVCN 820
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 666 KSVVFSQFSKXXXXXXXXXKAAGFKTLRLDGTMNAKQRANVIEQFQGSEKDGPMVLLASL 725
++++F+Q +K G+ +RLDG+ ++R ++++F + K + + S
Sbjct: 1093 RALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFNTNPK--IFLFILST 1150
Query: 726 RTSSTGINLTAASRVYLMEPWWNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKIL 784
R+ GINL A V + WN +++QA DR HRIGQ V + RLI++++IEE IL
Sbjct: 1151 RSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENIL 1209
>AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1
| chromatin remodeling 1 | chr5:26649050-26652869
FORWARD LENGTH=764
Length = 764
Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
Query: 666 KSVVFSQFSKXXXXXXXXXKAAGFKTLRLDGTMNAKQRANVIEQFQGSEKDGPMVLLASL 725
K ++FSQ++K GF+ R+DG++ +R I+ F EK + L S
Sbjct: 542 KVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDF-SDEKSSCSIFLLST 600
Query: 726 RTSSTGINLTAASRVYLMEPWWNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKIL 784
R GINLTAA L + WN ++ QA+DR HRIGQ + V V RL SIE ++L
Sbjct: 601 RAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIETRVL 659
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 24/195 (12%)
Query: 300 LIVCTPSAMSTWVAQLEEHTLRGALKTYIYYGDRRTGDAEELK--------KYDVVLTTY 351
L++ S +S W ++ T ++ IY+GD+ D K K+ +V+T+Y
Sbjct: 254 LVIAPLSTLSNWFNEIARFT--PSINAIIYHGDKNQRDELRRKHMPKTVGPKFPIVITSY 311
Query: 352 STLANELRLAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTGTLVQNG 411
N+ A+ ++ W VV+DE H +KN + + LK + +TGT +QN
Sbjct: 312 EVAMND---AKRILRHYPWKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNN 368
Query: 412 YSDLFSLMAFLRFEPFSIKNYWQSLVQRPLSQGN-----------ARGLNRLQVLMAAIS 460
S+L+SL+ F+ + F+ + ++S N A+ +++L ++
Sbjct: 369 LSELWSLLNFILPDIFTSHDEFESWFDFSEKNKNEATKEEEEKRRAQVVSKLHGILRPFI 428
Query: 461 LRRTKEMSSVGLPLK 475
LRR K + LP K
Sbjct: 429 LRRMKCDVELSLPRK 443
>AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1072
Length = 1072
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Query: 665 AKSVVFSQFSKXXXXXXXXXKAAGFKTLRLDGTMNAKQRANVIEQFQ--GSEKDGPMVLL 722
++ ++FSQ ++ G++ R+DG +R IE + GSEK V L
Sbjct: 512 SRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEK---FVFL 568
Query: 723 ASLRTSSTGINLTAASRVYLMEPWWNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEK 782
S R GINL A V L + WN V+ QA DR HRIGQK+ V+V R +N+IE K
Sbjct: 569 LSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAK 628
Query: 783 IL 784
++
Sbjct: 629 VI 630
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 105/237 (44%), Gaps = 18/237 (7%)
Query: 300 LIVCTPSAMSTWVAQLEEHTLRGALKTYIYYG--DRRTGDAEEL---KKYDVVLTTYSTL 354
++V S + W+ ++ L+ + G + R EEL K+D+ +T++
Sbjct: 247 MVVAPKSTLGNWMNEIRRFC--PVLRAVKFLGNPEERRHIREELLVAGKFDICVTSFEMA 304
Query: 355 ANELRLAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTGTLVQNGYSD 414
E + ++R W +++DEAH IKN N+ S+ + R +TGT +QN +
Sbjct: 305 IKE----KTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHE 360
Query: 415 LFSLMAFLRFEPFSIKNYWQSLVQRPLSQGNARGLNRLQVLMAAISLRRTKEMSSVGLPL 474
L++L+ FL E FS + Q + +L ++ LRR K GLP
Sbjct: 361 LWALLNFLLPEVFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 420
Query: 475 KTIETHHIELSAEERKMYDEVKEEADAILLRYGSSEGLVYSYSAVISMILRLRQICT 531
K + +S +++ Y + ++ ++ G + L +++ ++LR+ C
Sbjct: 421 KKETILKVGMSQMQKQYYKALLQKDLEVVNGGGERKRL-------LNIAMQLRKCCN 470
>AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1069
Length = 1069
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Query: 665 AKSVVFSQFSKXXXXXXXXXKAAGFKTLRLDGTMNAKQRANVIEQFQ--GSEKDGPMVLL 722
++ ++FSQ ++ G++ R+DG +R IE + GSEK V L
Sbjct: 512 SRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEK---FVFL 568
Query: 723 ASLRTSSTGINLTAASRVYLMEPWWNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEK 782
S R GINL A V L + WN V+ QA DR HRIGQK+ V+V R +N+IE K
Sbjct: 569 LSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAK 628
Query: 783 IL 784
++
Sbjct: 629 VI 630
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 105/237 (44%), Gaps = 18/237 (7%)
Query: 300 LIVCTPSAMSTWVAQLEEHTLRGALKTYIYYG--DRRTGDAEEL---KKYDVVLTTYSTL 354
++V S + W+ ++ L+ + G + R EEL K+D+ +T++
Sbjct: 247 MVVAPKSTLGNWMNEIRRFC--PVLRAVKFLGNPEERRHIREELLVAGKFDICVTSFEMA 304
Query: 355 ANELRLAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTGTLVQNGYSD 414
E + ++R W +++DEAH IKN N+ S+ + R +TGT +QN +
Sbjct: 305 IKE----KTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHE 360
Query: 415 LFSLMAFLRFEPFSIKNYWQSLVQRPLSQGNARGLNRLQVLMAAISLRRTKEMSSVGLPL 474
L++L+ FL E FS + Q + +L ++ LRR K GLP
Sbjct: 361 LWALLNFLLPEVFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 420
Query: 475 KTIETHHIELSAEERKMYDEVKEEADAILLRYGSSEGLVYSYSAVISMILRLRQICT 531
K + +S +++ Y + ++ ++ G + L +++ ++LR+ C
Sbjct: 421 KKETILKVGMSQMQKQYYKALLQKDLEVVNGGGERKRL-------LNIAMQLRKCCN 470
>AT5G19310.1 | Symbols: | Homeotic gene regulator |
chr5:6498906-6503432 FORWARD LENGTH=1064
Length = 1064
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 10/138 (7%)
Query: 668 VVFSQFSKXXXXXXXXXKAAGFKTLRLDGTMNAKQRANVIEQFQGSEKDGP-MVLLASLR 726
++FSQ ++ + LRLDG+ QR +++QF +E D P + L S R
Sbjct: 715 LLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTDQRGILLKQF--NEPDSPYFMFLLSTR 772
Query: 727 TSSTGINLTAASRVYLMEPWWNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKILML 786
G+NL A + + + WN +++QA DR HRIGQK+ V+V L++ SIEE IL
Sbjct: 773 AGGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSIGSIEEVIL-- 830
Query: 787 RERKQARKGFGMGMDMVV 804
ER + + MG+D V
Sbjct: 831 -ERAKQK----MGIDAKV 843
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 99/212 (46%), Gaps = 28/212 (13%)
Query: 343 KYDVVLTTYSTLANELRLAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAV-IALKAKRRW 401
K++V++T Y + + +A +K++ W +++DE H +KN ++ + + KRR
Sbjct: 484 KFNVLITHYDLIMRD----KAFLKKIDWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRL 539
Query: 402 AVTGTLVQNGYSDLFSLMAFLRFEPFSIKNYWQSLVQRPLSQGNARGL---------NRL 452
+TGT +QN +L+SL+ FL F+ + ++ P ++ + L NRL
Sbjct: 540 LLTGTPIQNSLQELWSLLNFLLPHIFNSIHNFEEWFNTPFAECGSASLTDEEELLIINRL 599
Query: 453 QVLMAAISLRRTKEMSSVGLPLKTIETHHIELSAEERKMYDEVKEEADAILLRYGSSEGL 512
++ LRR K LP KT ++SA ++ Y +V + R G G
Sbjct: 600 HHVIRPFLLRRKKSEVEKFLPGKTQVILKCDMSAWQKLYYKQVTDVG-----RVGLHSGN 654
Query: 513 VYSYSAVISMILRLRQICT--------DFALC 536
S S + ++ ++LR+ C D+ +C
Sbjct: 655 GKSKS-LQNLTMQLRKCCNHPYLFVGADYNMC 685
>AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552343-18556669
REVERSE LENGTH=877
Length = 877
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 75/155 (48%), Gaps = 11/155 (7%)
Query: 645 STKAFTLIKLLTESRDQDPTAKSVVFSQFSKXXXXXXXXXKAAGFKTLRLDGTMNAKQRA 704
S K L +LL R D + ++FSQ + + + RLDG++ A++R
Sbjct: 376 SGKLLVLDQLL--KRLHDSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERF 433
Query: 705 NVIEQFQG-------SEKDG--PMVLLASLRTSSTGINLTAASRVYLMEPWWNTGVEEQA 755
I+ F SE DG V + S R G+NL AA V E WN V++QA
Sbjct: 434 AAIKNFSAKTERGLDSEVDGSNAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQA 493
Query: 756 IDRVHRIGQKEAVKVVRLIAQNSIEEKILMLRERK 790
+ R HRIGQ V + L+ ++S+EE IL ERK
Sbjct: 494 LQRAHRIGQISHVLSINLVTEHSVEEVILRRAERK 528
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 123/269 (45%), Gaps = 45/269 (16%)
Query: 300 LIVCTPSAMSTWVAQLEEHTLRGALKTYIYYGDR------RTGDAEELKK--------YD 345
L++C S WV+++ T L+ Y GD+ R + +KK +D
Sbjct: 105 LVLCPLSVTDGWVSEINRFT--PNLEVLRYVGDKYCRLDMRKSMYDHVKKSSKGHFLPFD 162
Query: 346 VVLTTYS-TLANELRLAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAVI-ALKAKRRWAV 403
V+LTTY L ++ L++ P W ++DEA +KN N+ ++ RR +
Sbjct: 163 VLLTTYDIALVDQDFLSQIP-----WQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRLLI 217
Query: 404 TGTLVQNGYSDLFSLMAFLRFEPFSIKNYWQSLVQRPLSQGNARGLN---------RLQV 454
TGT +QN ++L++LM F P Q L + GL+ L+
Sbjct: 218 TGTPIQNNLTELWALMHFCM--PLVFGTLDQFLSAFKETGDGLSGLDVSNDKETYKSLKF 275
Query: 455 LMAAISLRRTK----EMSSVGLPLKTIETHHIELSAEERKMYDEV--KEEADAILLRYGS 508
++ A LRRTK E ++ LP T T + L + ++K+Y + KE + L G
Sbjct: 276 ILGAFMLRRTKSLLIESGNLVLPPLTELTVMVPLVSLQKKIYTSILRKELPGLLELSSGG 335
Query: 509 SEGLVYSYSAVISMILRLRQICTDFALCP 537
S +++++ +++++LR+ C+ L P
Sbjct: 336 S-----NHTSLQNIVIQLRKACSHPYLFP 359
>AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 |
chr2:5544601-5555543 REVERSE LENGTH=1724
Length = 1724
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 69/146 (47%), Gaps = 3/146 (2%)
Query: 645 STKAFTLIKLLTESRDQDPTAKSVVFSQFSKXXXXXXXXXKAAGFKTLRLDGTMNAKQRA 704
S K L KLL R+ + ++FSQ + GF+ RLDG+ A+ R
Sbjct: 938 SGKLVILDKLLVRLRE--TKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQ 995
Query: 705 NVIEQFQGSEKDGPMVLLASLRTSSTGINLTAASRVYLMEPWWNTGVEEQAIDRVHRIGQ 764
++ F D L S R GINL A V + + WN + QA+ R HRIGQ
Sbjct: 996 QAMDHFNAPASD-DFCFLLSTRAGGLGINLATADTVVIFDSDWNPQNDLQAMSRAHRIGQ 1054
Query: 765 KEAVKVVRLIAQNSIEEKILMLRERK 790
+E V + R + S+EE+IL +RK
Sbjct: 1055 QEVVNIYRFVTSKSVEEEILERAKRK 1080
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 121/271 (44%), Gaps = 33/271 (12%)
Query: 300 LIVCTPSAMSTWVAQLEE-------------HTLRGALKTYIYYGDRRTGDAEELKKYDV 346
L+V S ++ W + + R + Y +Y +++ G K++
Sbjct: 678 LVVVPLSTLANWAKEFRKWLPGMNIIVYVGTRASREVCQQYEFYNEKKVGRP---IKFNA 734
Query: 347 VLTTYSTLANELRLAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTGT 406
+LTTY + + +A + ++ W +++DEAH +KN A A++ K + +TGT
Sbjct: 735 LLTTYEVVLKD----KAVLSKIKWIYLMVDEAHRLKNSEAQLYTALLEFSTKNKLLITGT 790
Query: 407 LVQNGYSDLFSLMAFLRFEPFSIKNYWQSLVQ--RPLSQGNARGLNRLQVLMAAISLRRT 464
+QN +L++L+ FL +P KN V+ + LS N L L + + LRR
Sbjct: 791 PLQNSVEELWALLHFL--DPGKFKNK-DEFVENYKNLSSFNESELANLHLELRPHILRRV 847
Query: 465 KEMSSVGLPLKTIETHHIELSAEERKMYDEVKEEADAILLRYGSSEGLVYSYSAVISMIL 524
+ LP K +E+S +++ Y + E L ++G+ + +++++++
Sbjct: 848 IKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDL-----NKGVRGNQVSLLNIVV 902
Query: 525 RLRQICTDFALCPSDFKSHLLPSSDIEDVSK 555
L++ C L S + DI D SK
Sbjct: 903 ELKKCCNHPFLFESADHGY---GGDINDNSK 930
>AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1056
Length = 1056
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Query: 665 AKSVVFSQFSKXXXXXXXXXKAAGFKTLRLDGTMNAKQRANVIEQFQ--GSEKDGPMVLL 722
++ ++FSQ ++ G+ R+DG +R IE + GSEK V L
Sbjct: 507 SRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEK---FVFL 563
Query: 723 ASLRTSSTGINLTAASRVYLMEPWWNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEK 782
S R GINL A V L + WN V+ QA DR HRIGQK+ V+V R +++IEEK
Sbjct: 564 LSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEK 623
Query: 783 IL 784
++
Sbjct: 624 VI 625
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 4/150 (2%)
Query: 343 KYDVVLTTYSTLANELRLAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWA 402
K+D+ +T++ E + ++R W +++DEAH IKN N+ S+ + R
Sbjct: 288 KFDICVTSFEMAIKE----KTALRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLL 343
Query: 403 VTGTLVQNGYSDLFSLMAFLRFEPFSIKNYWQSLVQRPLSQGNARGLNRLQVLMAAISLR 462
+TGT +QN +L++L+ FL E FS + Q + +L ++ LR
Sbjct: 344 ITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLR 403
Query: 463 RTKEMSSVGLPLKTIETHHIELSAEERKMY 492
R K GLP K + +S +++ Y
Sbjct: 404 RLKSDVEKGLPPKKETILKVGMSQMQKQYY 433
>AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1055
Length = 1055
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Query: 665 AKSVVFSQFSKXXXXXXXXXKAAGFKTLRLDGTMNAKQRANVIEQFQ--GSEKDGPMVLL 722
++ ++FSQ ++ G+ R+DG +R IE + GSEK V L
Sbjct: 507 SRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEK---FVFL 563
Query: 723 ASLRTSSTGINLTAASRVYLMEPWWNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEK 782
S R GINL A V L + WN V+ QA DR HRIGQK+ V+V R +++IEEK
Sbjct: 564 LSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEK 623
Query: 783 IL 784
++
Sbjct: 624 VI 625
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 4/150 (2%)
Query: 343 KYDVVLTTYSTLANELRLAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWA 402
K+D+ +T++ E + ++R W +++DEAH IKN N+ S+ + R
Sbjct: 288 KFDICVTSFEMAIKE----KTALRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLL 343
Query: 403 VTGTLVQNGYSDLFSLMAFLRFEPFSIKNYWQSLVQRPLSQGNARGLNRLQVLMAAISLR 462
+TGT +QN +L++L+ FL E FS + Q + +L ++ LR
Sbjct: 344 ITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLR 403
Query: 463 RTKEMSSVGLPLKTIETHHIELSAEERKMY 492
R K GLP K + +S +++ Y
Sbjct: 404 RLKSDVEKGLPPKKETILKVGMSQMQKQYY 433
>AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1057
Length = 1057
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Query: 665 AKSVVFSQFSKXXXXXXXXXKAAGFKTLRLDGTMNAKQRANVIEQFQ--GSEKDGPMVLL 722
++ ++FSQ ++ G+ R+DG +R IE + GSEK V L
Sbjct: 507 SRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEK---FVFL 563
Query: 723 ASLRTSSTGINLTAASRVYLMEPWWNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEK 782
S R GINL A V L + WN V+ QA DR HRIGQK+ V+V R +++IEEK
Sbjct: 564 LSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEK 623
Query: 783 IL 784
++
Sbjct: 624 VI 625
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 4/150 (2%)
Query: 343 KYDVVLTTYSTLANELRLAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWA 402
K+D+ +T++ E + ++R W +++DEAH IKN N+ S+ + R
Sbjct: 288 KFDICVTSFEMAIKE----KTALRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLL 343
Query: 403 VTGTLVQNGYSDLFSLMAFLRFEPFSIKNYWQSLVQRPLSQGNARGLNRLQVLMAAISLR 462
+TGT +QN +L++L+ FL E FS + Q + +L ++ LR
Sbjct: 344 ITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLR 403
Query: 463 RTKEMSSVGLPLKTIETHHIELSAEERKMY 492
R K GLP K + +S +++ Y
Sbjct: 404 RLKSDVEKGLPPKKETILKVGMSQMQKQYY 433
>AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552440-18556669
REVERSE LENGTH=851
Length = 851
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 72/146 (49%), Gaps = 3/146 (2%)
Query: 645 STKAFTLIKLLTESRDQDPTAKSVVFSQFSKXXXXXXXXXKAAGFKTLRLDGTMNAKQRA 704
S K L +LL R D + ++FSQ + + + RLDG++ A++R
Sbjct: 367 SGKLLVLDQLL--KRLHDSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERF 424
Query: 705 NVIEQFQGSEKDGPMVLLASLRTSSTGINLTAASRVYLMEPWWNTGVEEQAIDRVHRIGQ 764
I+ F + V + S R G+NL AA V E WN V++QA+ R HRIGQ
Sbjct: 425 AAIKNF-SVDGSNAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQ 483
Query: 765 KEAVKVVRLIAQNSIEEKILMLRERK 790
V + L+ ++S+EE IL ERK
Sbjct: 484 ISHVLSINLVTEHSVEEVILRRAERK 509
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 121/258 (46%), Gaps = 32/258 (12%)
Query: 300 LIVCTPSAMSTWVAQLEEHTLRGALKTYIYYGDR--------RTGDAEELKKYDVVLTTY 351
L++C S WV+++ T L+ Y GD+ D +DV+LTTY
Sbjct: 105 LVLCPLSVTDGWVSEINRFT--PNLEVLRYVGDKYCRLDMRKSMYDHGHFLPFDVLLTTY 162
Query: 352 S-TLANELRLAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAVI-ALKAKRRWAVTGTLVQ 409
L ++ L++ P W ++DEA +KN N+ ++ RR +TGT +Q
Sbjct: 163 DIALVDQDFLSQIP-----WQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRLLITGTPIQ 217
Query: 410 NGYSDLFSLMAFLRFEPFSIKNYWQSLVQRP---LSQGNARGLNR-LQVLMAAISLRRTK 465
N ++L++LM F F + + S + L N + + L+ ++ A LRRTK
Sbjct: 218 NNLTELWALMHFCMPLVFGTLDQFLSAFKETGDGLDVSNDKETYKSLKFILGAFMLRRTK 277
Query: 466 ----EMSSVGLPLKTIETHHIELSAEERKMYDEV--KEEADAILLRYGSSEGLVYSYSAV 519
E ++ LP T T + L + ++K+Y + KE + L G S +++++
Sbjct: 278 SLLIESGNLVLPPLTELTVMVPLVSLQKKIYTSILRKELPGLLELSSGGS-----NHTSL 332
Query: 520 ISMILRLRQICTDFALCP 537
+++++LR+ C+ L P
Sbjct: 333 QNIVIQLRKACSHPYLFP 350
>AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3529
Length = 3529
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 688 GFKTLRLDGTMNAKQRANVIEQFQGSEKDGPM-VLLASLRTSSTGINLTAASRVYLMEPW 746
G+K LRLDG + R +I+ F S P + L S+R G+NL AA V L +
Sbjct: 1113 GYKYLRLDGQTSGGDRGALIDGFNKS--GSPFFIFLLSIRAGGVGVNLQAADTVILFDTD 1170
Query: 747 WNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKILMLRERK 790
WN V+ QA R HRIGQK+ V V+R NS+EE++ E K
Sbjct: 1171 WNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEEQVRASAEHK 1214
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 108/251 (43%), Gaps = 34/251 (13%)
Query: 300 LIVCTPSAMSTWVAQLEEHTLRGALKTYIYYG---DRRTGDAEEL--KKYDVVLTTYSTL 354
L+V S + W Q E + ++ +Y G +RR E++ +K++V+LTTY L
Sbjct: 807 LVVVPSSVLPGW--QSEINFWAPSIHKIVYCGTPDERRKLFKEQIVHQKFNVLLTTYEYL 864
Query: 355 ANELRLAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTGTLVQNGYSD 414
N + + ++ W +++DE H IKN + + + + R +TGT +QN +
Sbjct: 865 MN--KHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEE 922
Query: 415 LFSLMAFLRFEPFSIKNYWQSLVQRPLSQGNARG---------------LNRLQVLMAAI 459
L++L+ FL F+ + +P Q N +NRL ++
Sbjct: 923 LWALLNFLLPNIFNSSEDFSQWFNKPF-QSNGESSAEEALLSEEENLLIINRLHQVLRPF 981
Query: 460 SLRRTKEMSSVGLPLKTIETHHIELSAEERKMYDEVKEEADAILLRYGSSEGLVYSYSAV 519
LRR K LP K E SA ++ + V++ +I G S AV
Sbjct: 982 VLRRLKHKVENELPEKIERLIRCEASAYQKLLMKRVEDNLGSI--------GNAKSR-AV 1032
Query: 520 ISMILRLRQIC 530
+ ++ LR IC
Sbjct: 1033 HNSVMELRNIC 1043
>AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3543
Length = 3543
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 688 GFKTLRLDGTMNAKQRANVIEQFQGSEKDGPM-VLLASLRTSSTGINLTAASRVYLMEPW 746
G+K LRLDG + R +I+ F S P + L S+R G+NL AA V L +
Sbjct: 1113 GYKYLRLDGQTSGGDRGALIDGFNKS--GSPFFIFLLSIRAGGVGVNLQAADTVILFDTD 1170
Query: 747 WNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKILMLRERK 790
WN V+ QA R HRIGQK+ V V+R NS+EE++ E K
Sbjct: 1171 WNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEEQVRASAEHK 1214
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 108/251 (43%), Gaps = 34/251 (13%)
Query: 300 LIVCTPSAMSTWVAQLEEHTLRGALKTYIYYG---DRRTGDAEEL--KKYDVVLTTYSTL 354
L+V S + W Q E + ++ +Y G +RR E++ +K++V+LTTY L
Sbjct: 807 LVVVPSSVLPGW--QSEINFWAPSIHKIVYCGTPDERRKLFKEQIVHQKFNVLLTTYEYL 864
Query: 355 ANELRLAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTGTLVQNGYSD 414
N + + ++ W +++DE H IKN + + + + R +TGT +QN +
Sbjct: 865 MN--KHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEE 922
Query: 415 LFSLMAFLRFEPFSIKNYWQSLVQRPLSQGNARG---------------LNRLQVLMAAI 459
L++L+ FL F+ + +P Q N +NRL ++
Sbjct: 923 LWALLNFLLPNIFNSSEDFSQWFNKPF-QSNGESSAEEALLSEEENLLIINRLHQVLRPF 981
Query: 460 SLRRTKEMSSVGLPLKTIETHHIELSAEERKMYDEVKEEADAILLRYGSSEGLVYSYSAV 519
LRR K LP K E SA ++ + V++ +I G S AV
Sbjct: 982 VLRRLKHKVENELPEKIERLIRCEASAYQKLLMKRVEDNLGSI--------GNAKSR-AV 1032
Query: 520 ISMILRLRQIC 530
+ ++ LR IC
Sbjct: 1033 HNSVMELRNIC 1043
>AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3574
Length = 3574
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 688 GFKTLRLDGTMNAKQRANVIEQFQGSEKDGPM-VLLASLRTSSTGINLTAASRVYLMEPW 746
G+K LRLDG + R +I+ F S P + L S+R G+NL AA V L +
Sbjct: 1113 GYKYLRLDGQTSGGDRGALIDGFNKS--GSPFFIFLLSIRAGGVGVNLQAADTVILFDTD 1170
Query: 747 WNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKILMLRERK 790
WN V+ QA R HRIGQK+ V V+R NS+EE++ E K
Sbjct: 1171 WNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEEQVRASAEHK 1214
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 108/251 (43%), Gaps = 34/251 (13%)
Query: 300 LIVCTPSAMSTWVAQLEEHTLRGALKTYIYYG---DRRTGDAEEL--KKYDVVLTTYSTL 354
L+V S + W Q E + ++ +Y G +RR E++ +K++V+LTTY L
Sbjct: 807 LVVVPSSVLPGW--QSEINFWAPSIHKIVYCGTPDERRKLFKEQIVHQKFNVLLTTYEYL 864
Query: 355 ANELRLAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTGTLVQNGYSD 414
N + + ++ W +++DE H IKN + + + + R +TGT +QN +
Sbjct: 865 MN--KHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEE 922
Query: 415 LFSLMAFLRFEPFSIKNYWQSLVQRPLSQGNARG---------------LNRLQVLMAAI 459
L++L+ FL F+ + +P Q N +NRL ++
Sbjct: 923 LWALLNFLLPNIFNSSEDFSQWFNKPF-QSNGESSAEEALLSEEENLLIINRLHQVLRPF 981
Query: 460 SLRRTKEMSSVGLPLKTIETHHIELSAEERKMYDEVKEEADAILLRYGSSEGLVYSYSAV 519
LRR K LP K E SA ++ + V++ +I G S AV
Sbjct: 982 VLRRLKHKVENELPEKIERLIRCEASAYQKLLMKRVEDNLGSI--------GNAKSR-AV 1032
Query: 520 ISMILRLRQIC 530
+ ++ LR IC
Sbjct: 1033 HNSVMELRNIC 1043
>AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 |
chr2:8129154-8133502 FORWARD LENGTH=1187
Length = 1187
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Query: 668 VVFSQFSKXXXXXXXXXKAAGFKTLRLDGTMNAKQRANVIEQFQGSEKDGPMVLLASLRT 727
++FSQ + A + R+DG KQR +I++F SE V + + +
Sbjct: 747 LLFSQTQQMLDILESFLVANEYSYRRMDGLTPVKQRMALIDEFNNSED--MFVFVLTTKV 804
Query: 728 SSTGINLTAASRVYLMEPWWNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKI 783
G NLT A+RV + +P WN + QA +R RIGQK+ V V RLI + +IEEK+
Sbjct: 805 GGLGTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQKKDVTVYRLITRGTIEEKV 860
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 16/159 (10%)
Query: 346 VVLTTYSTLANELRLAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTG 405
+++TTY +LRL + + W VLDE H I+N N+ + L+ R +TG
Sbjct: 519 LLITTYE----QLRLQGEKLLNIEWGYAVLDEGHRIRNPNSDITLVCKQLQTVHRIIMTG 574
Query: 406 TLVQNGYSDLFSLMAFLRFEPFSIKNYWQSLVQRPLSQGNARGLNRLQV----------- 454
+QN ++L+SL F+ + +++ P++ G + LQV
Sbjct: 575 APIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCAVVLR 634
Query: 455 -LMAAISLRRTKEMSSVGLPLKTIETHHIELSAEERKMY 492
L+ LRR K + L KT L+ E+R Y
Sbjct: 635 DLIMPYLLRRMKADVNAHLTKKTEHVLFCSLTVEQRSTY 673
>AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=908
Length = 908
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 5/153 (3%)
Query: 644 LSTKAFTLIKLLTESRDQDPTAKSVVFSQFSKXXXXXXXXXKAAGFKTLRLDGTMNAKQR 703
LS K L +LL R + + V+ S +++ + + LRLDG+ +R
Sbjct: 530 LSGKMHVLSRLLANLR-RKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGSTTISKR 588
Query: 704 ANVIEQFQGSEKDGPMVLLASLRTSSTGINLTAASRVYLMEPWWNTGVEEQAIDRVHRIG 763
++ + KD LL+S + G+NL A+R+ L +P WN ++QA RV R G
Sbjct: 589 QKLVNRLNDPTKDEFAFLLSS-KAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDG 647
Query: 764 QKEAVKVVRLIAQNSIEEKILMLRERKQARKGF 796
QK+ V V R ++ +IEEK+ +R+ +++G
Sbjct: 648 QKKRVYVYRFLSTGTIEEKVY---QRQMSKEGL 677
>AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=910
Length = 910
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 5/153 (3%)
Query: 644 LSTKAFTLIKLLTESRDQDPTAKSVVFSQFSKXXXXXXXXXKAAGFKTLRLDGTMNAKQR 703
LS K L +LL R + + V+ S +++ + + LRLDG+ +R
Sbjct: 532 LSGKMHVLSRLLANLR-RKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGSTTISKR 590
Query: 704 ANVIEQFQGSEKDGPMVLLASLRTSSTGINLTAASRVYLMEPWWNTGVEEQAIDRVHRIG 763
++ + KD LL+S + G+NL A+R+ L +P WN ++QA RV R G
Sbjct: 591 QKLVNRLNDPTKDEFAFLLSS-KAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDG 649
Query: 764 QKEAVKVVRLIAQNSIEEKILMLRERKQARKGF 796
QK+ V V R ++ +IEEK+ +R+ +++G
Sbjct: 650 QKKRVYVYRFLSTGTIEEKVY---QRQMSKEGL 679
>AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 |
chr3:8832085-8835722 REVERSE LENGTH=1132
Length = 1132
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 13/180 (7%)
Query: 607 NPRCPLCRRSLSESDLFSAPPELSNVDTTELCSSEKGLSTK-AFTLIKLLTESRDQDPTA 665
+P LC + DL P L + L E+G+ TK I++ ++
Sbjct: 891 HPSLYLCCNPTKKEDLVIGPATLGTLKRLRL-KYEEGVKTKFLIDFIRISGTVKE----- 944
Query: 666 KSVVFSQFSKXXXXXXXXXKAA-----GFKTLRLDGTMNAKQRANVIEQFQGSEKDGPMV 720
K +V+SQ+ A G + L + G + + R ++I+ F + G V
Sbjct: 945 KVLVYSQYIDTLKLIMEQLIAECDWTEGEQILLMHGKVEQRDRQHMIDNFNKPDS-GSKV 1003
Query: 721 LLASLRTSSTGINLTAASRVYLMEPWWNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIE 780
LLAS + S GI+L ASRV +++ WN VE QAI R RIGQK AV + L+ +++ E
Sbjct: 1004 LLASTKACSEGISLVGASRVVILDVVWNPSVESQAISRAFRIGQKRAVFIYHLMVKDTSE 1063
>AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 |
chr1:1618795-1623195 REVERSE LENGTH=1410
Length = 1410
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 688 GFKTLRLDGTMNAKQRANVIEQFQGSEKDGPMVLLASLRTSSTGINLTAASRVYLMEPWW 747
G + L + G + KQR +I +F K V LAS + S GI+L ASRV L++ W
Sbjct: 1244 GEEVLYMHGKLEQKQRQTLINEFNDP-KSKAKVFLASTKACSEGISLVGASRVILLDVVW 1302
Query: 748 NTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIE 780
N VE QAI R +RIGQK V L+A+ + E
Sbjct: 1303 NPAVERQAISRAYRIGQKRIVYTYHLVAKGTPE 1335
>AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:523481-526884 FORWARD LENGTH=763
Length = 763
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 4/163 (2%)
Query: 644 LSTKAFTLIKLLTESRDQDPTAKSVVFSQFSKXXXXXXXXXKAAGFKTLRLDGTMNAKQR 703
LS K TL +LL + + ++FSQ++ G RLDG+ R
Sbjct: 586 LSAKCRTLAELLPSMKKS--GHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDR 643
Query: 704 ANVIEQFQGSEKDGPMVLLASLRTSSTGINLTAASRVYLMEPWWNTGVEEQAIDRVHRIG 763
+++ F + L S R G+NLT A V + + +N ++ QA DR HRIG
Sbjct: 644 QTIVDTFNNDK--SIFACLLSTRAGGQGLNLTGADTVIIHDMDFNPQIDRQAEDRCHRIG 701
Query: 764 QKEAVKVVRLIAQNSIEEKILMLRERKQARKGFGMGMDMVVDD 806
Q + V + RL+ +++++E I + +RK + + VDD
Sbjct: 702 QTKPVTIFRLVTKSTVDENIYEIAKRKLVLDAAVLESGVHVDD 744
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 101/219 (46%), Gaps = 25/219 (11%)
Query: 300 LIVCTPSAMSTWVAQLEEHTLRGALKTYI---YYGDRRTGDAEELKK---------YDVV 347
L+VC S + W E LR ++ Y+G R + EL ++V+
Sbjct: 267 LVVCPASVLENW-----ERELRKWCPSFTVLQYHGAARAAYSRELNSLSKAGKPPPFNVL 321
Query: 348 LTTYSTL---ANELRLAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAV--IALKAKRRWA 402
L YS + + + +KR W V++DEAH +K+ N+ + + + +A A +R
Sbjct: 322 LVCYSLFERHSEQQKDDRKVLKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLM 381
Query: 403 VTGTLVQNGYSDLFSLMAFLRFEPFSIKNYWQSLVQRPLSQGNARGLNRLQVLMAAISLR 462
+TGT +QN +L+SL+ F+ + F+ +N +++ L+ + + R++ ++ LR
Sbjct: 382 LTGTPLQNDLHELWSLLEFMLPDIFTTENV---DLKKLLNAEDTELITRMKSILGPFILR 438
Query: 463 RTKEMSSVGLPLKTIETHHIELSAEERKMYDEVKEEADA 501
R K L K ++ + ++ Y E EE A
Sbjct: 439 RLKSDVMQQLVPKIQRVEYVLMERKQEDAYKEAIEEYRA 477
>AT3G54460.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / F-box family protein |
chr3:20162050-20167186 REVERSE LENGTH=1378
Length = 1378
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 8/154 (5%)
Query: 296 SDATLIVCTPSAMSTWVAQLEEHTLRGALKTYIYYGDRRTGDAEELKKYDVVLTTYSTLA 355
S ATLIV + ++ W+ Q+++H L+ ++ YDVV+TT+S L+
Sbjct: 753 SKATLIVVPTNLVNHWLTQIQKHVCSDQLRILVWADHIELSPHSLAWDYDVVITTFSRLS 812
Query: 356 NELR-LAEAPVKRVVWWRVVLDEAHTIKNVNA--GQSQAVIALKAKRRWAVTGTLVQNG- 411
E ++P+ +V W RV+LDE HT+ + + + Q ++L A RW +TGT N
Sbjct: 813 AEWNPRKKSPLIQVHWLRVMLDEGHTLGSSVSLTNKFQMAVSLTACNRWLLTGTPTPNTP 872
Query: 412 ---YSDLFSLMAFLRFEPFSIK-NYWQSLVQRPL 441
S + L+ FL E + +W++ + RP
Sbjct: 873 NSQLSHIQPLLKFLHEEVYGENPKFWEAGILRPF 906
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 666 KSVVFSQFSKXXXXXXXXXKAAGFKTLRLDGTMNAKQRANVIEQFQGSEKDGPMVLLASL 725
K ++FSQF + AG K ++ M + + + FQ D + L
Sbjct: 1195 KVLIFSQFLEHIHVIEQQLTTAGIKFGKMYSPMQSYNKMKALAMFQN---DADCMALLMD 1251
Query: 726 RTSSTGINLTAASRVYLMEPWWNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKILM 785
+ + G++L+ + V+LMEP W+ +EEQ I R HR+G K + V L + +IEE+++
Sbjct: 1252 GSGALGLDLSFVTHVFLMEPIWDKSLEEQVISRAHRMGAKRPIFVETLTMRGTIEEQMMR 1311
Query: 786 LRE 788
E
Sbjct: 1312 FLE 1314
>AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1202
Length = 1202
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 3/162 (1%)
Query: 645 STKAFTLIKLLTESRDQDPTAKSVVFSQFSKXXXXXXXXXKAAGFKTLRLDGTMNAKQRA 704
S K L K++ + ++Q + ++++QF + R+DG ++ +R
Sbjct: 523 SGKLQLLDKMMVKLKEQ--GHRVLIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPERQ 580
Query: 705 NVIEQFQGSEKDGPMVLLASLRTSSTGINLTAASRVYLMEPWWNTGVEEQAIDRVHRIGQ 764
I++F +E L S R GINL A V + + WN + QA+ RVHR+GQ
Sbjct: 581 VRIDRF-NAENSNRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARVHRLGQ 639
Query: 765 KEAVKVVRLIAQNSIEEKILMLRERKQARKGFGMGMDMVVDD 806
V + RLI + ++EE+++ + + K + +G + D
Sbjct: 640 TNKVMIYRLIHKGTVEERMMEITKNKMLLEHLVVGKQHLCQD 681
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 120/253 (47%), Gaps = 33/253 (13%)
Query: 300 LIVCTPSAMSTWVAQLEEHTLRGALKTYIYYGDRRTGD---------AEELK-KYDVVLT 349
L+V S + W + E T + +Y GD D +E K K+DV+LT
Sbjct: 276 LVVAPLSTIRNW--EREFATWAPHMNVVMYTGDSEARDVIWEHEFYFSEGRKSKFDVLLT 333
Query: 350 TYSTLANELRLAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTGTLVQ 409
TY + + + +P+K W +++DE H +KN + ++ +K +TGT +Q
Sbjct: 334 TYEMVHPGISVL-SPIK---WTCMIIDEGHRLKNQKSKLYSSLSQFTSKHIVLLTGTPLQ 389
Query: 410 NGYSDLFSLMAFLRFEPFSIKNYWQSLVQRPLSQGNARGLNRLQVLMAAISLRR-TKEMS 468
N ++LF+LM FL + F +Q + ++RL ++A LRR K++
Sbjct: 390 NNLNELFALMHFLDADKFGSLEKFQDI-------NKEEQISRLHQMLAPHLLRRLKKDVL 442
Query: 469 SVGLPLKTIETHHIELSAEERKMYDEVKEEADAILLRYGSSEGLVYSYSAVISMILRLRQ 528
+P K +++S++++++Y V +L + ++ + +++++LRQ
Sbjct: 443 KDKVPPKKELILRVDMSSQQKEVYKAVITNNYQVLTKKRDAK--------ISNVLMKLRQ 494
Query: 529 ICTDFALCPSDFK 541
+C+ L P DF+
Sbjct: 495 VCSHPYLLP-DFE 506
>AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1161
Length = 1161
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 3/162 (1%)
Query: 645 STKAFTLIKLLTESRDQDPTAKSVVFSQFSKXXXXXXXXXKAAGFKTLRLDGTMNAKQRA 704
S K L K++ + ++Q + ++++QF + R+DG ++ +R
Sbjct: 482 SGKLQLLDKMMVKLKEQ--GHRVLIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPERQ 539
Query: 705 NVIEQFQGSEKDGPMVLLASLRTSSTGINLTAASRVYLMEPWWNTGVEEQAIDRVHRIGQ 764
I++F +E L S R GINL A V + + WN + QA+ RVHR+GQ
Sbjct: 540 VRIDRF-NAENSNRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARVHRLGQ 598
Query: 765 KEAVKVVRLIAQNSIEEKILMLRERKQARKGFGMGMDMVVDD 806
V + RLI + ++EE+++ + + K + +G + D
Sbjct: 599 TNKVMIYRLIHKGTVEERMMEITKNKMLLEHLVVGKQHLCQD 640
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 120/253 (47%), Gaps = 33/253 (13%)
Query: 300 LIVCTPSAMSTWVAQLEEHTLRGALKTYIYYGDRRTGD---------AEELK-KYDVVLT 349
L+V S + W + E T + +Y GD D +E K K+DV+LT
Sbjct: 235 LVVAPLSTIRNW--EREFATWAPHMNVVMYTGDSEARDVIWEHEFYFSEGRKSKFDVLLT 292
Query: 350 TYSTLANELRLAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTGTLVQ 409
TY + + + +P+K W +++DE H +KN + ++ +K +TGT +Q
Sbjct: 293 TYEMVHPGISVL-SPIK---WTCMIIDEGHRLKNQKSKLYSSLSQFTSKHIVLLTGTPLQ 348
Query: 410 NGYSDLFSLMAFLRFEPFSIKNYWQSLVQRPLSQGNARGLNRLQVLMAAISLRR-TKEMS 468
N ++LF+LM FL + F +Q + ++RL ++A LRR K++
Sbjct: 349 NNLNELFALMHFLDADKFGSLEKFQDI-------NKEEQISRLHQMLAPHLLRRLKKDVL 401
Query: 469 SVGLPLKTIETHHIELSAEERKMYDEVKEEADAILLRYGSSEGLVYSYSAVISMILRLRQ 528
+P K +++S++++++Y V +L + ++ + +++++LRQ
Sbjct: 402 KDKVPPKKELILRVDMSSQQKEVYKAVITNNYQVLTKKRDAK--------ISNVLMKLRQ 453
Query: 529 ICTDFALCPSDFK 541
+C+ L P DF+
Sbjct: 454 VCSHPYLLP-DFE 465
>AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1458
Length = 1458
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 54/96 (56%)
Query: 688 GFKTLRLDGTMNAKQRANVIEQFQGSEKDGPMVLLASLRTSSTGINLTAASRVYLMEPWW 747
G R+DG + +R ++++F + L S R S GINL AA+RV +++ W
Sbjct: 1146 GKDWYRIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSW 1205
Query: 748 NTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKI 783
N + QAI R R GQK+ V RL+A+ +IEEKI
Sbjct: 1206 NPTYDLQAIFRAWRYGQKKPVFAYRLMARGTIEEKI 1241
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 373 VVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTGTLVQNGYSDLFSLMAFLRFEPFSIKNY 432
+V DEAH IKN A +QA+ +K +RR A+TG+ +QN + + ++ F+R
Sbjct: 851 LVCDEAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSPE 910
Query: 433 WQSLVQRPLSQG--------NARGLN-RLQVL---MAAISLRRTKEMSSVGLPLKTIETH 480
+++ Q P+ G + + +N R +L + R + LP KT+
Sbjct: 911 FRNRFQNPIENGQHMNSTAEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 970
Query: 481 HIELSAEERKMYDEVKEEADAILLRYGSSEG 511
++LS +R +Y L YG S+G
Sbjct: 971 SVKLSPLQRILYQR-------FLELYGFSDG 994
>AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 54/96 (56%)
Query: 688 GFKTLRLDGTMNAKQRANVIEQFQGSEKDGPMVLLASLRTSSTGINLTAASRVYLMEPWW 747
G R+DG + +R ++++F + L S R S GINL AA+RV +++ W
Sbjct: 1167 GKDWYRIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSW 1226
Query: 748 NTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKI 783
N + QAI R R GQK+ V RL+A+ +IEEKI
Sbjct: 1227 NPTYDLQAIFRAWRYGQKKPVFAYRLMARGTIEEKI 1262
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 373 VVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTGTLVQNGYSDLFSLMAFLRFEPFSIKNY 432
+V DEAH IKN A +QA+ +K +RR A+TG+ +QN + + ++ F+R
Sbjct: 872 LVCDEAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSPE 931
Query: 433 WQSLVQRPLSQG--------NARGLN-RLQVL---MAAISLRRTKEMSSVGLPLKTIETH 480
+++ Q P+ G + + +N R +L + R + LP KT+
Sbjct: 932 FRNRFQNPIENGQHMNSTAEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 991
Query: 481 HIELSAEERKMYDEVKEEADAILLRYGSSEG 511
++LS +R +Y L YG S+G
Sbjct: 992 SVKLSPLQRILYQR-------FLELYGFSDG 1015
>AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 54/96 (56%)
Query: 688 GFKTLRLDGTMNAKQRANVIEQFQGSEKDGPMVLLASLRTSSTGINLTAASRVYLMEPWW 747
G R+DG + +R ++++F + L S R S GINL AA+RV +++ W
Sbjct: 1167 GKDWYRIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSW 1226
Query: 748 NTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKI 783
N + QAI R R GQK+ V RL+A+ +IEEKI
Sbjct: 1227 NPTYDLQAIFRAWRYGQKKPVFAYRLMARGTIEEKI 1262
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 373 VVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTGTLVQNGYSDLFSLMAFLRFEPFSIKNY 432
+V DEAH IKN A +QA+ +K +RR A+TG+ +QN + + ++ F+R
Sbjct: 872 LVCDEAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSPE 931
Query: 433 WQSLVQRPLSQG--------NARGLN-RLQVL---MAAISLRRTKEMSSVGLPLKTIETH 480
+++ Q P+ G + + +N R +L + R + LP KT+
Sbjct: 932 FRNRFQNPIENGQHMNSTAEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 991
Query: 481 HIELSAEERKMYDEVKEEADAILLRYGSSEG 511
++LS +R +Y L YG S+G
Sbjct: 992 SVKLSPLQRILYQR-------FLELYGFSDG 1015
>AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 54/96 (56%)
Query: 688 GFKTLRLDGTMNAKQRANVIEQFQGSEKDGPMVLLASLRTSSTGINLTAASRVYLMEPWW 747
G R+DG + +R ++++F + L S R S GINL AA+RV +++ W
Sbjct: 1167 GKDWYRIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSW 1226
Query: 748 NTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKI 783
N + QAI R R GQK+ V RL+A+ +IEEKI
Sbjct: 1227 NPTYDLQAIFRAWRYGQKKPVFAYRLMARGTIEEKI 1262
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 373 VVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTGTLVQNGYSDLFSLMAFLRFEPFSIKNY 432
+V DEAH IKN A +QA+ +K +RR A+TG+ +QN + + ++ F+R
Sbjct: 872 LVCDEAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSPE 931
Query: 433 WQSLVQRPLSQG--------NARGLN-RLQVL---MAAISLRRTKEMSSVGLPLKTIETH 480
+++ Q P+ G + + +N R +L + R + LP KT+
Sbjct: 932 FRNRFQNPIENGQHMNSTAEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 991
Query: 481 HIELSAEERKMYDEVKEEADAILLRYGSSEG 511
++LS +R +Y L YG S+G
Sbjct: 992 SVKLSPLQRILYQR-------FLELYGFSDG 1015
>AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin
remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763
FORWARD LENGTH=1384
Length = 1384
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 3/140 (2%)
Query: 651 LIKLLTESRDQDPTAKSVVFSQFSKXXXXXXXXXKAAGFKTLRLDGTMNAKQRANVIEQF 710
L K++ + ++Q + ++++QF ++ R+DG + +R I++F
Sbjct: 600 LDKMMVKLKEQ--GHRVLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAERQIRIDRF 657
Query: 711 QGSEKDGPMVLLASLRTSSTGINLTAASRVYLMEPWWNTGVEEQAIDRVHRIGQKEAVKV 770
++ L S R GINL A V + + WN + QA+ R HR+GQ V +
Sbjct: 658 -NAKNSNKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 716
Query: 771 VRLIAQNSIEEKILMLRERK 790
RLI + +IEE+++ L ++K
Sbjct: 717 YRLINRGTIEERMMQLTKKK 736
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 97/189 (51%), Gaps = 15/189 (7%)
Query: 343 KYDVVLTTYSTLANELRLAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWA 402
K+DV+LT+Y + L A +K + W +++DE H +KN ++ ++ + R
Sbjct: 393 KFDVLLTSYEMI----NLDSAVLKPIKWECMIVDEGHRLKNKDSKLFSSLTQYSSNHRIL 448
Query: 403 VTGTLVQNGYSDLFSLMAFLRFEPF-SIKNYWQSLVQRPLSQGNARGLNRLQVLMAAISL 461
+TGT +QN +LF LM FL F S++ + + + ++Q ++RL ++A L
Sbjct: 449 LTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEF--KDINQ--EEQISRLHKMLAPHLL 504
Query: 462 RRTKEMSSVGLPLKTIETHHIELSAEERKMYDEVKEEADAILLRYGSSEGLVYSYSAVIS 521
RR K+ +P K ++LS+ +++ Y + +L + G ++ ++ +
Sbjct: 505 RRVKKDVMKDMPPKKELILRVDLSSLQKEYYKAIFTRNYQVLTKKGGAQ------ISLNN 558
Query: 522 MILRLRQIC 530
+++ LR++C
Sbjct: 559 IMMELRKVC 567
>AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 |
chr5:18083659-18092162 REVERSE LENGTH=2223
Length = 2223
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 110/220 (50%), Gaps = 15/220 (6%)
Query: 321 RGALKTYIYYGDRRTGDAEELK--KYDVVLTTYSTLANELRLAEAPVKRVVWWRV-VLDE 377
R ++ Y ++ TG ++ K++V+LTTY E+ LA++ R V W V V+DE
Sbjct: 776 RAIIRDYEWHAKNSTGTTKKPTSYKFNVLLTTY-----EMVLADSSHLRGVPWEVLVVDE 830
Query: 378 AHTIKNVNAGQSQAVIALKAKRRWAVTGTLVQNGYSDLFSLMAFLRFEPFSIKNYWQSLV 437
H +KN + + + R +TGT +QN ++++L+ FL+ F + ++
Sbjct: 831 GHRLKNSESKLFSLLNTFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPSSFPSLSSFE--- 887
Query: 438 QRPLSQGNARGLNRLQVLMAAISLRRTKEMSSVGLPLKTIETHHIELSAEERKMYDEVKE 497
+R +A + L+ L+A LRR K+ + +P KT +EL++ + + Y +
Sbjct: 888 ERFHDLTSAEKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELTSIQAEYYRAMLT 947
Query: 498 EADAILLRYGSSEGLVYSYSAVISMILRLRQICTDFALCP 537
+ IL G + ++++++++LR++C L P
Sbjct: 948 KNYQILRNIGKG----VAQQSMLNIVMQLRKVCNHPYLIP 983
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 4/125 (3%)
Query: 668 VVFSQFSKXXXXXXXXXKAA-GFKTL-RLDGTMNAKQRANVIEQFQGSEKDGPMVLLASL 725
++FSQ +K G KT R+DG++ R I +F ++ V L S
Sbjct: 1024 LIFSQMTKLLDILEDYLNIEFGPKTFERVDGSVAVADRQAAIARF--NQDKNRFVFLLST 1081
Query: 726 RTSSTGINLTAASRVYLMEPWWNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKILM 785
R GINL A V + + +N + QA++R HRIGQ + + V RL+ + S+EE+IL
Sbjct: 1082 RACGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQ 1141
Query: 786 LRERK 790
L ++K
Sbjct: 1142 LAKKK 1146
>AT5G20420.1 | Symbols: CHR42 | chromatin remodeling 42 |
chr5:6899015-6903266 REVERSE LENGTH=1261
Length = 1261
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 59/95 (62%), Gaps = 3/95 (3%)
Query: 688 GFKTLRLDGTMNAKQRANVIEQFQGSEKDGP-MVLLASLRTSSTGINLTAASRVYLMEPW 746
G + L L G + +R VI++F+ E P VLLAS+ + GI+LTAASRV +++
Sbjct: 1107 GREILTLTGDLELFERGRVIDKFE--EPGNPSRVLLASITACAEGISLTAASRVIMLDSE 1164
Query: 747 WNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEE 781
WN +QAI R R GQ++ V V +L+++ ++EE
Sbjct: 1165 WNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEE 1199
>AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 |
chr2:9179622-9182356 REVERSE LENGTH=816
Length = 816
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 97/417 (23%), Positives = 173/417 (41%), Gaps = 72/417 (17%)
Query: 373 VVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTGTLVQNGYSDLFSLMAFLRFEPFSIKNY 432
++LDE HT +N ++ +K +R+ +TGTL QN ++F+++ +R
Sbjct: 406 LILDEGHTSRNKETYMLSSLARVKTRRKVVLTGTLFQNNVEEVFNILDLVR--------- 456
Query: 433 WQSLVQRPLSQGNARGLNRLQVLMAAISLRRTKEMSSVGLPLKTIETHHIELSAEERKMY 492
++RP G ++R+ M+ + R K+++ ++ +EL+ +
Sbjct: 457 -PKFLKRP---GTREIVSRI---MSKAEIPRGKQVNQSSSSIEGTFFAAVELTLQRST-- 507
Query: 493 DEVKEEADAILLRYGSSEGLVYSYSAVISMILRLRQICTD-FALCPSDFKSHLLPSSDIE 551
++SA S+I LR++ + +DF S LLP
Sbjct: 508 ----------------------NFSAKASLIKDLREMTRNILHYHKADF-SGLLPGLSEF 544
Query: 552 DVSKNPELLQ-TLVRILQDGEDFECPICISPPTDIVITCCAHIFCQPCILKTLQRSNPRC 610
V N +Q V+ L+ E F+ I+ A ++ P LK+ NP
Sbjct: 545 TVMLNLSSIQRDEVKGLRKMELFK-----------QISLGAALYIHP-KLKSFLEENPSN 592
Query: 611 PLCRRSLSESDLFSAPPELSNVDTTELCSSEKGLSTKAFTLIKLLTESRDQDPTAKSVVF 670
S + + + L ++ + G+ K F + L ES + K +VF
Sbjct: 593 GEKGFSDNNTTVMKLDKMLKKINVRD------GVKMKFFLNLLALCESTGE----KLLVF 642
Query: 671 SQFS---KXXXXXXXXXKA--AGFKTLRLDGTMNAKQRANVIEQFQGSEKDGPMVLLASL 725
SQ+ K K G + + G + +QR +E+F S + V S+
Sbjct: 643 SQYIVPIKTLERLMSSMKGWRLGKEMFTITGDSSNEQREWSMERFNNSLE--AKVFFGSI 700
Query: 726 RTSSTGINLTAASRVYLMEPWWNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEK 782
+ GI+L ASRV +++ N V +QA+ R +R GQK V +L+A +S EE+
Sbjct: 701 KACGEGISLVGASRVLILDVHLNPSVTQQAVARAYRPGQKRKVYAYKLVAADSPEEE 757
>AT1G48310.1 | Symbols: CHR18, CHA18 | chromatin remodeling factor18
| chr1:17848620-17853731 REVERSE LENGTH=673
Length = 673
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 666 KSVVFSQFSKXXXXXXXXXKAAGFKTLRLDGTMNAKQRANVIEQFQGSEKDGPMVLLASL 725
K +VF+ K +R+DG+ A R ++ FQ +KD + S+
Sbjct: 486 KFLVFAHHQSMLEELHQFLKKKKVGCIRIDGSTPASSRQALVSDFQ--DKDEIKAAVLSI 543
Query: 726 RTSSTGINLTAASRVYLMEPWWNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEKI 783
R + GI LTAAS V E W G QA DR HRIGQ +V + L+A +++++ I
Sbjct: 544 RAAGVGITLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDII 601
>AT3G42670.1 | Symbols: CHR38, CLSY | chromatin remodeling 38 |
chr3:14755906-14760085 REVERSE LENGTH=1256
Length = 1256
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 59/95 (62%), Gaps = 3/95 (3%)
Query: 688 GFKTLRLDGTMNAKQRANVIEQFQGSEKDG-PMVLLASLRTSSTGINLTAASRVYLMEPW 746
G + L L G + +R VI++F+ E G VLLAS+ + GI+LTAASRV +++
Sbjct: 1101 GRELLTLTGDLELFERGRVIDKFE--EPGGQSRVLLASITACAEGISLTAASRVIMLDSE 1158
Query: 747 WNTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEE 781
WN +QAI R R GQ++ V V +L+++ ++EE
Sbjct: 1159 WNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEE 1193
>AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2192
Length = 2192
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 693 RLDGTMNAKQRANVIEQFQGSEKDGPMVLLASLRTSSTGINLTAASRVYLMEPWWNTGVE 752
R+DGT + + R + I F + D + L S+R + G+NL A V + +P N E
Sbjct: 1352 RIDGTTSLEDRESAIVDFNDPDTDC-FIFLLSIRAAGRGLNLQTADTVVIYDPDPNPKNE 1410
Query: 753 EQAIDRVHRIGQKEAVKVVRLIAQNSIEEKILMLRERKQARKGFGMGM--DMVVDD 806
EQA+ R HRIGQ VKV+ + A + EK+ ++ + R G + + DM D
Sbjct: 1411 EQAVARAHRIGQTREVKVIYMEA---VVEKLSSHQKEDELRSGGSVDLEDDMAGKD 1463
>AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2193
Length = 2193
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 693 RLDGTMNAKQRANVIEQFQGSEKDGPMVLLASLRTSSTGINLTAASRVYLMEPWWNTGVE 752
R+DGT + + R + I F + D + L S+R + G+NL A V + +P N E
Sbjct: 1353 RIDGTTSLEDRESAIVDFNDPDTDC-FIFLLSIRAAGRGLNLQTADTVVIYDPDPNPKNE 1411
Query: 753 EQAIDRVHRIGQKEAVKVVRLIAQNSIEEKILMLRERKQARKGFGMGM--DMVVDD 806
EQA+ R HRIGQ VKV+ + A + EK+ ++ + R G + + DM D
Sbjct: 1412 EQAVARAHRIGQTREVKVIYMEA---VVEKLSSHQKEDELRSGGSVDLEDDMAGKD 1464
>AT4G28270.1 | Symbols: ATRMA2, RMA2 | RING membrane-anchor 2 |
chr4:14007614-14008195 REVERSE LENGTH=193
Length = 193
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 22/89 (24%)
Query: 566 ILQDGEDFECPICISPPTDIVITCCAHIFCQPCILKTLQRSN---------------PRC 610
++ G DF+C IC+ D V+T C H+FC PCI K SN P+C
Sbjct: 12 LVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKC 71
Query: 611 PLCRRSLSESDLF-------SAPPELSNV 632
P+C+ +SE+ L AP SNV
Sbjct: 72 PVCKSDVSEATLVPIYGRGQKAPQSGSNV 100
>AT3G58030.4 | Symbols: | RING/U-box superfamily protein |
chr3:21485527-21486837 FORWARD LENGTH=436
Length = 436
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 569 DGEDFECPICISPPTDIVITCCAHIFCQPCILKTLQRSNPR-CPLCR 614
DG F+C IC+ + V+TCC H++C PC+ + LQ S+ + CP+C+
Sbjct: 133 DGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQISDAKECPVCK 179
>AT3G58030.3 | Symbols: | RING/U-box superfamily protein |
chr3:21485527-21486837 FORWARD LENGTH=436
Length = 436
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 569 DGEDFECPICISPPTDIVITCCAHIFCQPCILKTLQRSNPR-CPLCR 614
DG F+C IC+ + V+TCC H++C PC+ + LQ S+ + CP+C+
Sbjct: 133 DGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQISDAKECPVCK 179
>AT3G58030.2 | Symbols: | RING/U-box superfamily protein |
chr3:21485527-21486837 FORWARD LENGTH=436
Length = 436
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 569 DGEDFECPICISPPTDIVITCCAHIFCQPCILKTLQRSNPR-CPLCR 614
DG F+C IC+ + V+TCC H++C PC+ + LQ S+ + CP+C+
Sbjct: 133 DGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQISDAKECPVCK 179
>AT3G58030.1 | Symbols: | RING/U-box superfamily protein |
chr3:21485527-21486837 FORWARD LENGTH=436
Length = 436
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 569 DGEDFECPICISPPTDIVITCCAHIFCQPCILKTLQRSNPR-CPLCR 614
DG F+C IC+ + V+TCC H++C PC+ + LQ S+ + CP+C+
Sbjct: 133 DGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQISDAKECPVCK 179
>AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:7097638-7101182 FORWARD LENGTH=888
Length = 888
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 688 GFKTLRLDGTMNAKQRANVIEQFQGSEKDGPMVLLASLRTSSTGINLTAASRVYLMEPWW 747
G + L G +++QR +E F S + S++ GI+L ASR+ +++
Sbjct: 739 GKEVFVLTGNTSSEQREWSMETFNSSPD--AKIFFGSIKACGEGISLVGASRILILDVPL 796
Query: 748 NTGVEEQAIDRVHRIGQKEAVKVVRLIAQNSIEEK 782
N V QAI R R GQK+ V RLIA +S EE+
Sbjct: 797 NPSVTRQAIGRAFRPGQKKMVHAYRLIAGSSPEEE 831
>AT2G44950.1 | Symbols: RDO4, HUB1 | histone mono-ubiquitination 1 |
chr2:18542602-18548247 REVERSE LENGTH=878
Length = 878
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 571 EDFECPICISPPTDIVITCCAHIFCQPCILKTLQRSNPRCPLCRRSLSESDL 622
E +C C P ++VIT C H+FC PC+ K +CP C S +D+
Sbjct: 822 EILKCKACNDRPKEVVITKCYHLFCNPCVQKLTGTRQKKCPTCSASFGPNDI 873
>AT2G23780.1 | Symbols: | RING/U-box superfamily protein |
chr2:10123551-10124234 REVERSE LENGTH=227
Length = 227
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 570 GEDFECPICISPPTDIVITCCAHIFCQPCILKTLQR--SNPRCPLCRRSLSESDL 622
G DFEC IC D ++T C H+FC PC+ + L + CP+C+ + + L
Sbjct: 23 GGDFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQDDKL 77
>AT1G19310.1 | Symbols: | RING/U-box superfamily protein |
chr1:6676424-6677104 REVERSE LENGTH=226
Length = 226
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 573 FECPICISPPTDIVITCCAHIFCQPCILK--TLQRSNPRCPLCRRSLSESDL 622
FEC IC+ D ++T C H+FC PC+ K L + CP+C+ + E L
Sbjct: 21 FECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQSKDCPVCKAVIEEDRL 72
>AT3G07200.2 | Symbols: | RING/U-box superfamily protein |
chr3:2291343-2292223 FORWARD LENGTH=182
Length = 182
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 573 FECPICISPPTDIVITCCAHIFCQPCILKTLQRSNPRCPLCRRSLSESDLF 623
F CPIC+ P T V T C HIFC+ CI L +CP CR+ ++ DL
Sbjct: 125 FSCPICLCPFTQEVSTKCGHIFCKKCIKNALS-LQAKCPTCRKKITVKDLI 174
>AT3G07200.1 | Symbols: | RING/U-box superfamily protein |
chr3:2291343-2292223 FORWARD LENGTH=182
Length = 182
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 573 FECPICISPPTDIVITCCAHIFCQPCILKTLQRSNPRCPLCRRSLSESDLF 623
F CPIC+ P T V T C HIFC+ CI L +CP CR+ ++ DL
Sbjct: 125 FSCPICLCPFTQEVSTKCGHIFCKKCIKNALS-LQAKCPTCRKKITVKDLI 174
>AT5G48655.3 | Symbols: | RING/U-box superfamily protein |
chr5:19731575-19732486 REVERSE LENGTH=203
Length = 203
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 573 FECPICISPPTDIVITCCAHIFCQPCILKTLQRSNPRCPLCRRSLSESDLF 623
F CPIC+ P T+ + T C HIFC+ CI + R +CP CR+ ++ +L
Sbjct: 146 FTCPICMCPFTEEMSTKCGHIFCKGCIKMAISRQG-KCPTCRKKVTAKELI 195
>AT5G48655.1 | Symbols: | RING/U-box superfamily protein |
chr5:19731575-19732486 REVERSE LENGTH=203
Length = 203
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 573 FECPICISPPTDIVITCCAHIFCQPCILKTLQRSNPRCPLCRRSLSESDLF 623
F CPIC+ P T+ + T C HIFC+ CI + R +CP CR+ ++ +L
Sbjct: 146 FTCPICMCPFTEEMSTKCGHIFCKGCIKMAISRQG-KCPTCRKKVTAKELI 195
>AT5G48655.2 | Symbols: | RING/U-box superfamily protein |
chr5:19731575-19732486 REVERSE LENGTH=203
Length = 203
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 573 FECPICISPPTDIVITCCAHIFCQPCILKTLQRSNPRCPLCRRSLSESDLF 623
F CPIC+ P T+ + T C HIFC+ CI + R +CP CR+ ++ +L
Sbjct: 146 FTCPICMCPFTEEMSTKCGHIFCKGCIKMAISRQG-KCPTCRKKVTAKELI 195