Miyakogusa Predicted Gene

Lj1g3v4103640.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4103640.1 tr|A9TMT4|A9TMT4_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_223708,55.81,6e-18,MRP-L27,Ribosomal protein L27/L41,
mitochondrial; MITOCHONDRIAL RIBOSOMAL PROTEIN
L41,NULL,NODE_66711_length_612_cov_47.429737.path2.1
         (92 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G40080.1 | Symbols:  | Mitochondrial ribosomal protein L27 | ...   151   7e-38
AT4G09012.1 | Symbols:  | Mitochondrial ribosomal protein L27 | ...   140   1e-34
AT5G39800.1 | Symbols:  | Mitochondrial ribosomal protein L27 | ...   132   5e-32

>AT5G40080.1 | Symbols:  | Mitochondrial ribosomal protein L27 |
          chr5:16040190-16041529 REVERSE LENGTH=94
          Length = 94

 Score =  151 bits (382), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 69/88 (78%), Positives = 80/88 (90%)

Query: 4  GLILGIGRAFRRKRTSSLDILTSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPKYVV 63
          GL++GIGR+FRRKR SSLDIL+ KRAPRD+YKGKNCKPTGFHTRKGGYVV P+KLP YVV
Sbjct: 6  GLLMGIGRSFRRKRASSLDILSPKRAPRDFYKGKNCKPTGFHTRKGGYVVQPDKLPNYVV 65

Query: 64 PDLTDFKLKPYVSQCPREVNTSEDSQTT 91
          PDLT FKLKPYVSQCP +VNT+E ++ +
Sbjct: 66 PDLTGFKLKPYVSQCPLQVNTNESTEAS 93


>AT4G09012.1 | Symbols:  | Mitochondrial ribosomal protein L27 |
           chr4:5780470-5783438 REVERSE LENGTH=166
          Length = 166

 Score =  140 bits (354), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 76/92 (82%), Gaps = 1/92 (1%)

Query: 1   MPLGLILGIGRAFRRKRTSSLDILTSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPK 60
           M LGL+ GIGR FRRKR SSLDIL+ KRAPRD+YKGKNCKP GFHTRK GYVV P+KLP 
Sbjct: 75  MTLGLLFGIGRTFRRKRASSLDILSPKRAPRDFYKGKNCKPPGFHTRK-GYVVQPDKLPN 133

Query: 61  YVVPDLTDFKLKPYVSQCPREVNTSEDSQTTT 92
           YVVPDLT FKLKPYVSQCP +VN + +S   +
Sbjct: 134 YVVPDLTGFKLKPYVSQCPLDVNKTNESTEAS 165


>AT5G39800.1 | Symbols:  | Mitochondrial ribosomal protein L27 |
          chr5:15935580-15936936 FORWARD LENGTH=94
          Length = 94

 Score =  132 bits (332), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 69/88 (78%), Positives = 81/88 (92%)

Query: 4  GLILGIGRAFRRKRTSSLDILTSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPKYVV 63
          GL++GIGR+FRRKR+SSLDIL+ KRAPRD+YKGKNCKPTGFHTRKGGYVV P+KLP YVV
Sbjct: 6  GLLMGIGRSFRRKRSSSLDILSPKRAPRDFYKGKNCKPTGFHTRKGGYVVQPDKLPNYVV 65

Query: 64 PDLTDFKLKPYVSQCPREVNTSEDSQTT 91
          PDLT FKLKPYVSQCP +VNT+E ++ +
Sbjct: 66 PDLTGFKLKPYVSQCPIQVNTNESTEAS 93