Miyakogusa Predicted Gene

Lj1g3v4093500.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4093500.2 Non Chatacterized Hit- tr|A5AUM8|A5AUM8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,33.77,2e-18,seg,NULL; ELONGIN-A-RELATED,NULL; TRANSCRIPTION
ELONGATION FACTOR B POLYPEPTIDE 3,NULL; TFIIS_N,Tran,CUFF.31915.2
         (446 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G05140.1 | Symbols:  | Transcription elongation factor (TFIIS...   301   4e-82
AT3G10820.2 | Symbols:  | Transcription elongation factor (TFIIS...   247   1e-65
AT3G10820.1 | Symbols:  | Transcription elongation factor (TFIIS...   181   1e-45
AT5G09850.1 | Symbols:  | Transcription elongation factor (TFIIS...    84   2e-16

>AT5G05140.1 | Symbols:  | Transcription elongation factor (TFIIS)
           family protein | chr5:1520353-1522297 FORWARD LENGTH=436
          Length = 436

 Score =  301 bits (772), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 200/465 (43%), Positives = 254/465 (54%), Gaps = 53/465 (11%)

Query: 3   SGSLDQWRSYFRS-ANSDIFDIIDHAIIVAASDCPKEFRLRRDWIAERLFSCKLTRCLGC 61
           SGSLD WR YFR   +SDIF IIDHAI+VAA+DCP +F+ RRD IAE LFSC++ RC+GC
Sbjct: 4   SGSLDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCRVNRCVGC 63

Query: 62  DRVELAVAXXXXXXXXXXXXXXCKIE-------AGASKESKANDASGDDHGEMNMNPDSI 114
           D +EL+V                          AG SKESKAN + GD++  +     S 
Sbjct: 64  DHLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDNNQIV-----SN 118

Query: 115 YSFGXXXXXXXXXXXXSQYLEEVLRIKXXXXXXXXXXDSVIFDSLRRLQLMELTVDRLKA 174
           Y+F             S   +EV RIK          +SV+ DSLR L+LM L VD LK+
Sbjct: 119 YTFDEAEALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKS 178

Query: 175 TEIGKAVNPLRKHGSQDIRQLARTLIIGWKEMVDEWVNATTTTVIAASEGTPDSVNPSVV 234
           TEIGKAVN LRKH S  IRQLA+TLI  WKE+VD+WVN  TT  I  +EGTP+S NPSV+
Sbjct: 179 TEIGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVN--TTKEITGAEGTPESANPSVL 236

Query: 235 XXXXXXGLPSPPLDEGAFFVTQAGSMELSQFFDGMDDDGNPRQSGQFNKNRENGRKPAMD 294
                   PS P D    F  +    E+S FFD +D DGNPR S + N +RE+ R+P   
Sbjct: 237 --DEEEAFPSLPYDVD-IFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERRP--- 290

Query: 295 NQVVEKRKVQASNETAFTFTAKDTKSQQAKKNEASVRLNKPVTAD--SGPGRPPKSNMQR 352
            Q + KRK + +               Q +  +A  R  KP +A    G  RP K + ++
Sbjct: 291 -QNIAKRKPEGT---------------QMRIQDAPFRSIKPSSATDFDGTRRPVKQSTEQ 334

Query: 353 KASDEP-------KMAVQQKIENNTITRRPPIVQQNKSKCSDDAAKLEATKRKLQERYQQ 405
           +  +E        K  +Q+K       R+ P  QQ K K  D  AK E  KRKLQE YQ 
Sbjct: 335 RMKNETVSVHKSEKPMIQRKPVVTEQKRKAPGPQQEKLKGLDADAKFEFAKRKLQESYQH 394

Query: 406 AENAKRQRTIQVMELNDLPKQVIAHRNPHFK--SGNHRQW--GRK 446
            ENAK+QRTIQV+E+  +PKQ  A + P  K    ++R W  GRK
Sbjct: 395 HENAKKQRTIQVLEM--IPKQGSAQK-PQLKRPGMSNRNWANGRK 436


>AT3G10820.2 | Symbols:  | Transcription elongation factor (TFIIS)
           family protein | chr3:3387358-3390693 FORWARD LENGTH=580
          Length = 580

 Score =  247 bits (631), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 168/442 (38%), Positives = 221/442 (50%), Gaps = 87/442 (19%)

Query: 3   SGSLDQWRSYFRSANSDIFDIIDHAIIVAASDCPKEFRLRRDWIAERLFSCKLTRCLGCD 62
           S SLD WR YFR  +SDIF IIDHAI+VAA+D PKEF+ R D IAE LFSCK++RC+GCD
Sbjct: 7   SVSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKVSRCIGCD 66

Query: 63  RVELAVAXXXXXXXXXXXXXXCKIEAGASKESKANDASGDDHGEMNMNPDSIYSFGXXXX 122
            +EL++A               +I        + +       GE                
Sbjct: 67  HLELSIAGDEAA---------VEIVGVGGGGDRGDSGVATGEGE---------------- 101

Query: 123 XXXXXXXXSQYLEEVLRIKXXXXXXXXXXDSVIFDSLRRLQLMELTVDRLKATEIGKAVN 182
                   S  ++EV+RI+          DSV+ +SLR+L+ M ++VD LK TEIGKAVN
Sbjct: 102 ------EASVSVDEVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKAVN 155

Query: 183 PLRKHGSQDIRQLARTLIIGWKEMVDEWVNATTTTVIAASEGTPDSVNPSVVXXXXXXGL 242
            LR+H S  I +LA+TL   WK +VD+W+N  T   +A +EGTP+S+N SV+        
Sbjct: 156 GLRRHSSDKISKLAKTLFAEWKRLVDQWMN--TPEEMAGTEGTPESLNLSVI--DEEEAF 211

Query: 243 PSPPLDEGAFFVTQAGSMELSQFFDGMDDDGNPRQSGQFNKNREN----GRKPAMDNQVV 298
           PSPP D    +  +    ELSQ  D +D DGNPR S +    R++    GR+P   N   
Sbjct: 212 PSPPHDLD-IYAPEPNGFELSQILDCLDCDGNPRHSVESKHERKSQSSAGRRPKGTNDA- 269

Query: 299 EKRKVQASNETAFTFTAKDTKSQQAKKNEASVRLNKPVTADSGPGRPPKSNMQRKASD-- 356
                            +    QQ ++ EA VR                  M+  A+D  
Sbjct: 270 -------------NVVGRYCNDQQTRREEADVR-----------------PMKHSATDVV 299

Query: 357 EPKMAVQQKIEN--NTITRRPPIV----------QQNKSKCSDDAAKLEATKRKLQERYQ 404
           EPK   +Q  E   + I R+P  V          QQ+K K  D  +K E  KRKLQE Y 
Sbjct: 300 EPKRQTKQSREQMVSAIQRKPTAVTEQKRKLAGPQQDKLKALDPDSKFEFAKRKLQESYH 359

Query: 405 QAENAKRQRTIQVMELNDLPKQ 426
           Q ENAKRQRTIQV+E   +PKQ
Sbjct: 360 QHENAKRQRTIQVLET--IPKQ 379


>AT3G10820.1 | Symbols:  | Transcription elongation factor (TFIIS)
           family protein | chr3:3387358-3389026 FORWARD LENGTH=288
          Length = 288

 Score =  181 bits (458), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 143/263 (54%), Gaps = 36/263 (13%)

Query: 3   SGSLDQWRSYFRSANSDIFDIIDHAIIVAASDCPKEFRLRRDWIAERLFSCKLTRCLGCD 62
           S SLD WR YFR  +SDIF IIDHAI+VAA+D PKEF+ R D IAE LFSCK++RC+GCD
Sbjct: 7   SVSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKVSRCIGCD 66

Query: 63  RVELAVAXXXXXXXXXXXXXXCKIEAGASKESKANDASGDDHGEMNMNPDSIYSFGXXXX 122
            +EL++A               +I        + +       GE                
Sbjct: 67  HLELSIAGDEAA---------VEIVGVGGGGDRGDSGVATGEGE---------------- 101

Query: 123 XXXXXXXXSQYLEEVLRIKXXXXXXXXXXDSVIFDSLRRLQLMELTVDRLKATEIGKAVN 182
                   S  ++EV+RI+          DSV+ +SLR+L+ M ++VD LK TEIGKAVN
Sbjct: 102 ------EASVSVDEVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKAVN 155

Query: 183 PLRKHGSQDIRQLARTLIIGWKEMVDEWVNATTTTVIAASEGTPDSVNPSVVXXXXXXGL 242
            LR+H S  I +LA+TL   WK +VD+W+N  T   +A +EGTP+S+N SV+        
Sbjct: 156 GLRRHSSDKISKLAKTLFAEWKRLVDQWMN--TPEEMAGTEGTPESLNLSVI--DEEEAF 211

Query: 243 PSPPLDEGAFFVTQAGSMELSQF 265
           PSPP D    +  +    ELSQ 
Sbjct: 212 PSPPHDLD-IYAPEPNGFELSQI 233


>AT5G09850.1 | Symbols:  | Transcription elongation factor (TFIIS)
           family protein | chr5:3063488-3065221 REVERSE LENGTH=353
          Length = 353

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 101/213 (47%), Gaps = 22/213 (10%)

Query: 6   LDQWRSYFRSANSDIFDIIDHAIIVAASDCPKEFRLRRDWIAERLFSCKLT-RCLGCD-- 62
           LD +RS   +A  D++  ID AI+VA+ D  +E + RRD I ERL++  +  +C  CD  
Sbjct: 3   LDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMANKCRNCDFG 62

Query: 63  ----RVELAVAXXXXXXXXXXXXXXCKIEAGASKESKANDASGDDHGEMNMNPDSIYSFG 118
                 E A+                +    A+ E +  + S +   + + +P     F 
Sbjct: 63  GGGNVTEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVREKSVNVEDDDDFDP-----FA 117

Query: 119 XXXXXXXXXXXXSQYLEEVLRIKXXXXXXXXXXDSVIFDSLRRLQLMELTVDRLKATEIG 178
                           + ++ IK          +S++ + L+ L+ M++T   L+ T+IG
Sbjct: 118 GLFDDEQ---------KSIVEIKEKLEDPDLSEESLV-ELLQNLEDMDITFQALQETDIG 167

Query: 179 KAVNPLRKHGSQDIRQLARTLIIGWKEMVDEWV 211
           + VN +RKH S ++R+LA+ L+  WKE VDEWV
Sbjct: 168 RHVNRVRKHPSNNVRRLAKQLVKKWKETVDEWV 200



 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 30/34 (88%)

Query: 392 LEATKRKLQERYQQAENAKRQRTIQVMELNDLPK 425
            +  +++LQ+ Y+QAENAK+QRTIQVM+++D+PK
Sbjct: 300 FDTARKRLQQNYRQAENAKKQRTIQVMDIHDIPK 333