Miyakogusa Predicted Gene

Lj1g3v4093200.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4093200.1 tr|D7MMT8|D7MMT8_ARALL Predicted protein
(Fragment) OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAF,67.16,1e-18,R3H DOMAIN CONTAINING PROTEIN,R3H
domain-containing protein, viridiplantae; CAMP-REGULATED
PHOSPHOPR,CUFF.31981.1
         (364 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56680.1 | Symbols:  | Single-stranded nucleic acid binding R...   318   3e-87
AT2G40960.1 | Symbols:  | Single-stranded nucleic acid binding R...   306   1e-83
AT3G10770.2 | Symbols:  | Single-stranded nucleic acid binding R...   253   1e-67
AT5G05100.1 | Symbols:  | Single-stranded nucleic acid binding R...   252   2e-67
AT3G10770.1 | Symbols:  | Single-stranded nucleic acid binding R...   251   7e-67
AT5G33406.1 | Symbols:  | hAT dimerisation domain-containing pro...    65   6e-11

>AT3G56680.1 | Symbols:  | Single-stranded nucleic acid binding R3H
           protein | chr3:20991537-20993446 FORWARD LENGTH=353
          Length = 353

 Score =  318 bits (816), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 182/359 (50%), Positives = 229/359 (63%), Gaps = 16/359 (4%)

Query: 12  TCVPNDAAASG---FKDKESMVDPFLVEALQNPRHRLTILRMELDIQSFMNNADQQHFEF 68
             +P  A  +G     D    VDPFLVEAL N RHRLTILRMELD+Q  + N +QQ FEF
Sbjct: 3   VVLPETAVVTGGSVIGDYGFNVDPFLVEALHNSRHRLTILRMELDVQRLLQNPEQQQFEF 62

Query: 69  QHFPSSYLRLAAHRVAQHYGMQTMVQDCGLDGQGSKILVRKLPESKYPAVCLSEIP-AKQ 127
           QHFP+SYLRLAAHRVA HYG+ T VQ+ G DG  ++ILV K  ESK+PAV LSEIP AKQ
Sbjct: 63  QHFPTSYLRLAAHRVANHYGLATAVQESGADGNENRILVTKTTESKFPAVRLSEIPVAKQ 122

Query: 128 VENDKCFQKKIVIRPRPGK-AGLNDGNGSGVKGNHLRSVEERKEEYDRARARIFSGSRSS 186
            EN K   +K+ I+ RP K +G   G+    +G  LRSVEERKEEYD+AR RIFSG    
Sbjct: 123 SENGKFESRKVSIKTRPSKGSGYGAGDLEKNRGP-LRSVEERKEEYDKARERIFSGLTGL 181

Query: 187 DSGDTLSVVPMDGQSSFMSRDEYETRKNPMADSERIMSVKDANAT-RVAIFRDREKDRSD 245
              D+ S   +  +++ +SRD+ +  KN   + ++ +S++++  T RVAIFRDREKDR D
Sbjct: 182 SCDDSSSETQVYERNASLSRDDKQVSKNAYVEVKKNLSIRESGPTSRVAIFRDREKDRFD 241

Query: 246 PDYDRSYGRYARSMSM-PAVNLVPFNVQITQPSFAQYDTTFNQLVQMPPTQASLGYIPPS 304
           PDYDR + RY RS+ +    NL PFN+Q  Q     Y+  F    Q+P   A LG+ P  
Sbjct: 242 PDYDRRHQRYIRSLPVNQNFNLPPFNIQ--QIPTPYYEMGFTGYNQIPSPPAPLGFGPHP 299

Query: 305 SPIMSPFCNGGLNQTPRDPAYLQWPSPTIMYAHSYDQFRHAVYQAPFGQQPLSFDYSQN 363
           S IMSP+       T  D  Y+ WP+  +MYAH Y+QFR+   QA F QQPLSFDY QN
Sbjct: 300 SSIMSPYG------TTMDAMYMHWPNAAMMYAHPYEQFRNGSLQAQFVQQPLSFDYMQN 352


>AT2G40960.1 | Symbols:  | Single-stranded nucleic acid binding R3H
           protein | chr2:17095637-17097368 FORWARD LENGTH=351
          Length = 351

 Score =  306 bits (784), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 176/356 (49%), Positives = 225/356 (63%), Gaps = 12/356 (3%)

Query: 12  TCVPNDAAASGFKDKESMVDPFLVEALQNPRHRLTILRMELDIQSFMNNADQQHFEFQHF 71
           T + +++  +   DK   VDPFLVEALQNPRHRLTILRMELD+Q F+ + DQQ FEFQHF
Sbjct: 3   TALTSESGCAVIADKGFNVDPFLVEALQNPRHRLTILRMELDVQRFLQSPDQQQFEFQHF 62

Query: 72  PSSYLRLAAHRVAQHYGMQTMVQDCGLDGQGSKILVRKLPESKYPAVCLSEIPAKQVEND 131
           P+SYLR AAHRVA HYG+ T V+D G DG  S+I+V K  +S++PA  LSEIP KQ E  
Sbjct: 63  PTSYLRFAAHRVANHYGLITSVRDGGADGNESRIVVTKSSDSRFPAARLSEIPVKQSETG 122

Query: 132 KCFQKKIVIRPRPGKAGLNDGNGSGVKGNHLRSVEERKEEYDRARARIFSGSRSSDSGDT 191
           K    K+VI+PRP K    +G+   +KG  L+SVEERKE+YDRARARIF+G  + D  D+
Sbjct: 123 KFEHMKVVIKPRPTKGSGMEGD--ELKGGLLKSVEERKEDYDRARARIFNGLVNIDCNDS 180

Query: 192 LSVVPMDGQSSFMSRDEYETRKNPMADSER-IMSVKDANATRVAIFRDREKDRSDPDYDR 250
            S       +   SRDE +  KN   ++++  +S K   A+R+AI RDREKDR DPDYDR
Sbjct: 181 SSETNPWRVNCSSSRDENQVLKNGNIEADKNNISRKSNPASRIAILRDREKDRYDPDYDR 240

Query: 251 SYGRYARSMSMPA-VNLVPFNVQITQPSFAQYDTTFNQLVQMPPTQASLGYIPPSSPIMS 309
           S  RY  ++ +   + +  FN+Q        YD  F       P   +LG       +MS
Sbjct: 241 SNYRYISNLPVDQNLCVAHFNIQTMGTPI--YDMGFRGYSPTAPPSLNLG----QHSVMS 294

Query: 310 PFCNGGLNQTPRDPA-YLQWP-SPTIMYAHSYDQFRHAVYQAPFGQQPLSFDYSQN 363
           P    GLNQ  RD A Y+QWP +  +MY HSYD FR++ +QA F  QPLSFDY QN
Sbjct: 295 PCVTTGLNQPSRDAAMYMQWPNAAAVMYTHSYDHFRNSPFQAQFYPQPLSFDYMQN 350


>AT3G10770.2 | Symbols:  | Single-stranded nucleic acid binding R3H
           protein | chr3:3372461-3374026 REVERSE LENGTH=325
          Length = 325

 Score =  253 bits (647), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 167/343 (48%), Positives = 214/343 (62%), Gaps = 27/343 (7%)

Query: 21  SGFKDKESMVDPFLVEALQNPRHRLTILRMELDIQSFMNNADQQHFEFQHFPSSYLRLAA 80
           +   +KE+MVDPFLVEALQNPRHRLTILRMELDIQ F  N +Q  FEF  FP+SYLRLAA
Sbjct: 2   ASMTEKEAMVDPFLVEALQNPRHRLTILRMELDIQKFFQNPEQLQFEFPPFPTSYLRLAA 61

Query: 81  HRVAQHYGMQTMVQDCGL---DGQGSKILVRKLPESKYPAVCLSEIPAKQVENDKCFQKK 137
           HRVAQHYG+ TM  D G    DG  ++ILV K  ES++P VCLSEIP KQ EN +    K
Sbjct: 62  HRVAQHYGLVTMALDNGTGAGDGSDNRILVTKTAESRFPYVCLSEIPVKQPENGRPEGFK 121

Query: 138 IVIRPRPGKAGLNDGNGSGVKGNHLRSVEERKEEYDRARARIFSGSRSSDSGDTLSVVP- 196
           I I+PRP +     G+GSGV+ N LRSVEERKEEYD+ARARIF+   SSDS D+ S+ P 
Sbjct: 122 IAIKPRPKRGSGCGGSGSGVQQNLLRSVEERKEEYDKARARIFNSPSSSDSEDSSSLRPP 181

Query: 197 -MDGQSSFMSRDEYETRKNPMADSERIMSVKDANAT-RVAIFRDREKDRSDPDYDRSYGR 254
            ++ +++ ++R+E E   N   +S      +D+  T RVAI RDREKDR DPDYDRSY R
Sbjct: 182 SLEVRNTCINRNETEVAVN---NSPVDAVTRDSGRTSRVAIIRDREKDRYDPDYDRSYDR 238

Query: 255 YARSM-SMPAVNLVPFNVQITQPSFAQYDTTFNQLVQMPPTQASLGYIPPSSPIMSPFCN 313
           Y R M S  + + +P ++         +D  F  + +    QA+L Y  P +P +SPF +
Sbjct: 239 YVRVMPSGQSFSPMPIHIPF-------HDGFFPHMPRG--HQANLNYGHPLNPALSPFTH 289

Query: 314 GGLNQTPRDPAYLQWP-SPTIMYAHSYDQFRHAVYQAPFGQQP 355
              + TP       WP SP + YA   +     +Y+ P    P
Sbjct: 290 NVASYTP-------WPNSPVMNYAQPLNGSDTNLYRYPSASNP 325


>AT5G05100.1 | Symbols:  | Single-stranded nucleic acid binding R3H
           protein | chr5:1505461-1506940 REVERSE LENGTH=324
          Length = 324

 Score =  252 bits (644), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 169/344 (49%), Positives = 214/344 (62%), Gaps = 44/344 (12%)

Query: 21  SGFKDKESMVDPFLVEALQNPRHRLTILRMELDIQSFMNNADQQHFEFQHFPSSYLRLAA 80
           +   DKE+MVDPFLVEALQNPRHRLTILRMELDIQ F  + +QQ +EFQ  P+SYLRL A
Sbjct: 2   AAMSDKEAMVDPFLVEALQNPRHRLTILRMELDIQKFFQSPEQQQYEFQPLPTSYLRLIA 61

Query: 81  HRVAQHYGM-QTMVQDCGLDGQGSKILVRKLPESKYPAVCLSEIPAKQVE-NDKCFQKKI 138
           HRVAQHYG+  T ++  G+DG G++IL  K  ES+YP VCLSEIP KQ E + +    KI
Sbjct: 62  HRVAQHYGLFTTALEGGGVDGSGNRILATKTVESRYPYVCLSEIPVKQPEIHGRPEGFKI 121

Query: 139 VIRPRPGKAGLNDGNGSGVKGNHLRSVEERKEEYDRARARIFSGSRSSDSGDTLSVVP-- 196
            I+PRP +     G+GSGV+ N LRSVEERKEEYD+ARARIF+   SSDS D+ +  P  
Sbjct: 122 AIKPRPNRGAGGSGSGSGVEKNLLRSVEERKEEYDKARARIFNSPSSSDSEDSSTRAPPP 181

Query: 197 ----MDGQ--SSFMSRDEYET----RKNPMADSERIMSVKDANAT-RVAIFRDREKDRSD 245
               +D +  ++  SR+E E       NP+ D ER   ++D+  T RVAI RDREKDR D
Sbjct: 182 PYPRLDSKHNTACPSRNETEVVVNYNSNPV-DVERNGVIRDSGRTSRVAIIRDREKDRYD 240

Query: 246 PDYDRSYGRYARSMSMPAVNLVPFNVQITQPSFAQYDTTFNQLVQMPPTQASLGYIPPSS 305
           PDYDR+  RY R ++ P  N  P  + +       +D  F    QMP TQASL Y  P +
Sbjct: 241 PDYDRN--RYVR-VAPPVQNFNPIPIPL-----PFHDAIFP---QMPRTQASLNYGHPLN 289

Query: 306 PIMSPFCNGGLNQTPRDPAYLQWPSPTIMYAHSYD-----QFRH 344
           P M+             P+Y +WPS T+ YA + +      FRH
Sbjct: 290 PAMT------------APSYTEWPSATMTYAQTLNASDVHHFRH 321


>AT3G10770.1 | Symbols:  | Single-stranded nucleic acid binding R3H
           protein | chr3:3372461-3374026 REVERSE LENGTH=333
          Length = 333

 Score =  251 bits (640), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 167/344 (48%), Positives = 211/344 (61%), Gaps = 21/344 (6%)

Query: 21  SGFKDKESMVDPFLVEALQNPRHRLTILRMELDIQSFMNNADQQHFEFQHFPSSYLRLAA 80
           +   +KE+MVDPFLVEALQNPRHRLTILRMELDIQ F  N +Q  FEF  FP+SYLRLAA
Sbjct: 2   ASMTEKEAMVDPFLVEALQNPRHRLTILRMELDIQKFFQNPEQLQFEFPPFPTSYLRLAA 61

Query: 81  HRVAQHYGMQTMVQDCGL---DGQGSKILVRKLPESKYPAVCLSEIPAKQVENDKCFQKK 137
           HRVAQHYG+ TM  D G    DG  ++ILV K  ES++P VCLSEIP KQ EN +    K
Sbjct: 62  HRVAQHYGLVTMALDNGTGAGDGSDNRILVTKTAESRFPYVCLSEIPVKQPENGRPEGFK 121

Query: 138 IVIRPRPGKAGLNDGNGSGVKGNHLRSVEERKEEYDRARARIFSGSRSSDSGDTLSVVP- 196
           I I+PRP +     G+GSGV+ N LRSVEERKEEYD+ARARIF+   SSDS D+ S+ P 
Sbjct: 122 IAIKPRPKRGSGCGGSGSGVQQNLLRSVEERKEEYDKARARIFNSPSSSDSEDSSSLRPP 181

Query: 197 -MDGQSSFMSRDEYETRKNPMADSERIMSVKDANAT-RVAIFRDREKDRSDPDYDRSYGR 254
            ++ +++ ++R+E E   N   +S      +D+  T RVAI RDREKDR DPDYDRSY R
Sbjct: 182 SLEVRNTCINRNETEVAVN---NSPVDAVTRDSGRTSRVAIIRDREKDRYDPDYDRSYDR 238

Query: 255 YARSMSMPAVNLVPFNVQIT-QPSFAQYDTTFNQLVQMP-PTQASLGYIPPSSPIMSPFC 312
           Y    +   V ++P     +  P    +   F     MP   QA+L Y  P +P +SPF 
Sbjct: 239 YVVDPAYRYVRVMPSGQSFSPMPIHIPFHDGF--FPHMPRGHQANLNYGHPLNPALSPFT 296

Query: 313 NGGLNQTPRDPAYLQWP-SPTIMYAHSYDQFRHAVYQAPFGQQP 355
           +   + TP       WP SP + YA   +     +Y+ P    P
Sbjct: 297 HNVASYTP-------WPNSPVMNYAQPLNGSDTNLYRYPSASNP 333


>AT5G33406.1 | Symbols:  | hAT dimerisation domain-containing
           protein / transposase-related | chr5:12676126-12678403
           REVERSE LENGTH=509
          Length = 509

 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 6/74 (8%)

Query: 290 QMPPTQASLGYIPPSSPIMSPFCNGGLNQTPRDPAYLQWPSPTIMYAHSYDQFRHAVYQA 349
           Q+P   A LG+ PP S  MSP+       T  D  Y+  P+  +MYAH Y+Q R+   QA
Sbjct: 422 QIPSIPAPLGFGPPPSSTMSPY------GTTMDAMYMHLPNAAMMYAHPYEQLRNGPLQA 475

Query: 350 PFGQQPLSFDYSQN 363
            F QQPLSFDY +N
Sbjct: 476 QFVQQPLSFDYCRN 489