Miyakogusa Predicted Gene

Lj1g3v4083160.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4083160.1 tr|A9S9W5|A9S9W5_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_182654,34.01,9e-16,no description,Mog1/PsbP,
alpha/beta/alpha sandwich; PsbP,Photosystem II PsbP, oxygen evolving
compl,CUFF.31882.1
         (255 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56650.1 | Symbols:  | Mog1/PsbP/DUF1795-like photosystem II ...   352   2e-97
AT1G77090.1 | Symbols:  | Mog1/PsbP/DUF1795-like photosystem II ...    71   5e-13

>AT3G56650.1 | Symbols:  | Mog1/PsbP/DUF1795-like photosystem II
           reaction center PsbP family protein |
           chr3:20984807-20985913 FORWARD LENGTH=262
          Length = 262

 Score =  352 bits (902), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 172/236 (72%), Positives = 198/236 (83%), Gaps = 1/236 (0%)

Query: 20  LSPVRTFRASASSDSVPATRSYQLIPPRREFLKGIALGALPLVLLRETPPPAEARDVEVG 79
           +SP  +    A S  V A+   Q  P RRE L   A+ A+P +L  +  P + AR+VEVG
Sbjct: 15  VSPKSSASIKARSRVVVASSQQQQQPRRRELLLKSAV-AIPAILQLKEAPISAAREVEVG 73

Query: 80  SFLPPSPADPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQTRIANILSGNYCQPKCA 139
           S+LP SP+DPSFVLFKA P DTPALRAGNVQPYQF+LPP WKQ RIANILSGNYCQPKCA
Sbjct: 74  SYLPLSPSDPSFVLFKAKPSDTPALRAGNVQPYQFVLPPNWKQLRIANILSGNYCQPKCA 133

Query: 140 EPWVEVKFEDEKQGKVQVVASPLIRLTNKPNATIEDIGSPDKVIASLGPFVTGSTYDPDE 199
           EPW+EVKFE+EKQGKVQVVASPLIRLTNKPNATIED+G P+KVIASLGPFVTG++YD DE
Sbjct: 134 EPWIEVKFENEKQGKVQVVASPLIRLTNKPNATIEDLGEPEKVIASLGPFVTGNSYDSDE 193

Query: 200 LIETSVEKLGDQTYYKYALETPYALTGSHNLAKATAKGNTVVLFVASANDKQWQTS 255
           L++TS+EK+GDQTYYKY LETP+ALTGSHNLAKATAKG+TVVLFV SA +KQWQ+S
Sbjct: 194 LLKTSIEKIGDQTYYKYVLETPFALTGSHNLAKATAKGSTVVLFVVSATEKQWQSS 249


>AT1G77090.1 | Symbols:  | Mog1/PsbP/DUF1795-like photosystem II
           reaction center PsbP family protein |
           chr1:28960576-28961875 REVERSE LENGTH=260
          Length = 260

 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 21/149 (14%)

Query: 109 VQPYQFILPPTWKQT--RIANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLT 166
           + PY F +P  W +    IA+ L G           ++++F   K+G++ V+ +P++R  
Sbjct: 113 IIPYAFSVPQDWNEVPVSIAD-LGGTE---------IDLRFASPKEGRLSVIVAPVLRFA 162

Query: 167 NK--PNATIEDIGSPDKVIASLGPFVTGSTYDPDELIETSVEKLGDQTYYKYALETPYAL 224
           +    +  IE+IG P KVI + GP V G   +  +++ ++V +   + YY++ LE P   
Sbjct: 163 DNLGDDVKIENIGQPAKVINAFGPEVIGENVE-GKVLSSNVAEHDGRLYYQFELEPP--- 218

Query: 225 TGSHNLAKATAKGNTVVLFVASANDKQWQ 253
              H L  ATA GN + LF  + N  QW+
Sbjct: 219 ---HVLITATAAGNRLYLFSVTGNGLQWK 244