Miyakogusa Predicted Gene

Lj1g3v4081820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4081820.1 Non Chatacterized Hit- tr|D8RR13|D8RR13_SELML
Putative uncharacterized protein OS=Selaginella
moelle,29.77,2e-17,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.31853.1
         (515 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56590.1 | Symbols:  | hydroxyproline-rich glycoprotein famil...   276   4e-74
AT3G56590.2 | Symbols:  | hydroxyproline-rich glycoprotein famil...   275   4e-74
AT3G10810.1 | Symbols:  | zinc finger (C3HC4-type RING finger) f...   263   2e-70
AT1G10790.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...   102   6e-22

>AT3G56590.1 | Symbols:  | hydroxyproline-rich glycoprotein family
           protein | chr3:20965105-20967675 FORWARD LENGTH=477
          Length = 477

 Score =  276 bits (705), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 159/318 (50%), Positives = 199/318 (62%), Gaps = 7/318 (2%)

Query: 1   MGK-AAEEEHQPLPRGGTSTDPALNAEEDCRCRCSRIRKLLSVRCIXXXXXXXXXXXXXX 59
           MGK   EE++ P+  G  S            C C  I    S+RC+              
Sbjct: 1   MGKNTVEEQNLPVSDGAASARNNGGGGISTCCCCDWISSYFSLRCVLILAFSAAVFLSAL 60

Query: 60  XXXXXXXRLADQKHLHENSRYKGHDIVASFIVNKSASLLEDNIPQLADEIFDEIGAPSTK 119
                    AD   L  + R+K H IVASF V K  S +EDN+ QL ++I DEI  P TK
Sbjct: 61  FWLPPFLGFADPGDLDLDPRFKDHRIVASFDVGKPISFMEDNLMQLENDITDEISFPMTK 120

Query: 120 VVILSLDPLPGPNKTKVVFAVDPDVGLSEMAQAAISLIKSSFTSIIIRDSPFQLTSSSIF 179
           VV+L+L+ L   N+T V+FA+DP+   S++     SLIK++F +++ +   F+LT S +F
Sbjct: 121 VVVLALERLGDLNRTMVIFAIDPEKENSKIPAEIESLIKAAFETLVQKQLSFRLTES-LF 179

Query: 180 GDPFFFEVLKFKGGITIIPHQTAFPLQQRQTLFTFTLNFPIYQIQLDFDELTSQLKSGLH 239
           G+PFFFEVLKF GGIT+IP Q  FPLQ+ Q LF FTLNF IYQIQ +F+EL SQLK G++
Sbjct: 180 GEPFFFEVLKFPGGITVIPPQPIFPLQKAQLLFNFTLNFSIYQIQSNFEELASQLKKGIN 239

Query: 240 LASFENLYMSLSNSEGSTVDAPTTVQSSVLLAIGITPSKQRLKQLAQTIMGPH--NLGLN 297
           LAS+ENLY++LSNS GSTV  PT V SSVLL  G   S  RLKQLAQTI   H  NLGLN
Sbjct: 240 LASYENLYITLSNSRGSTVAPPTIVHSSVLLTFG---SSSRLKQLAQTITSSHSKNLGLN 296

Query: 298 NTEFGRVKQVRLSSILQH 315
           +T FG+VKQVRLSSIL H
Sbjct: 297 HTVFGKVKQVRLSSILPH 314


>AT3G56590.2 | Symbols:  | hydroxyproline-rich glycoprotein family
           protein | chr3:20965105-20967784 FORWARD LENGTH=489
          Length = 489

 Score =  275 bits (704), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 159/318 (50%), Positives = 199/318 (62%), Gaps = 7/318 (2%)

Query: 1   MGK-AAEEEHQPLPRGGTSTDPALNAEEDCRCRCSRIRKLLSVRCIXXXXXXXXXXXXXX 59
           MGK   EE++ P+  G  S            C C  I    S+RC+              
Sbjct: 1   MGKNTVEEQNLPVSDGAASARNNGGGGISTCCCCDWISSYFSLRCVLILAFSAAVFLSAL 60

Query: 60  XXXXXXXRLADQKHLHENSRYKGHDIVASFIVNKSASLLEDNIPQLADEIFDEIGAPSTK 119
                    AD   L  + R+K H IVASF V K  S +EDN+ QL ++I DEI  P TK
Sbjct: 61  FWLPPFLGFADPGDLDLDPRFKDHRIVASFDVGKPISFMEDNLMQLENDITDEISFPMTK 120

Query: 120 VVILSLDPLPGPNKTKVVFAVDPDVGLSEMAQAAISLIKSSFTSIIIRDSPFQLTSSSIF 179
           VV+L+L+ L   N+T V+FA+DP+   S++     SLIK++F +++ +   F+LT S +F
Sbjct: 121 VVVLALERLGDLNRTMVIFAIDPEKENSKIPAEIESLIKAAFETLVQKQLSFRLTES-LF 179

Query: 180 GDPFFFEVLKFKGGITIIPHQTAFPLQQRQTLFTFTLNFPIYQIQLDFDELTSQLKSGLH 239
           G+PFFFEVLKF GGIT+IP Q  FPLQ+ Q LF FTLNF IYQIQ +F+EL SQLK G++
Sbjct: 180 GEPFFFEVLKFPGGITVIPPQPIFPLQKAQLLFNFTLNFSIYQIQSNFEELASQLKKGIN 239

Query: 240 LASFENLYMSLSNSEGSTVDAPTTVQSSVLLAIGITPSKQRLKQLAQTIMGPH--NLGLN 297
           LAS+ENLY++LSNS GSTV  PT V SSVLL  G   S  RLKQLAQTI   H  NLGLN
Sbjct: 240 LASYENLYITLSNSRGSTVAPPTIVHSSVLLTFG---SSSRLKQLAQTITSSHSKNLGLN 296

Query: 298 NTEFGRVKQVRLSSILQH 315
           +T FG+VKQVRLSSIL H
Sbjct: 297 HTVFGKVKQVRLSSILPH 314


>AT3G10810.1 | Symbols:  | zinc finger (C3HC4-type RING finger)
           family protein | chr3:3381848-3384227 REVERSE LENGTH=496
          Length = 496

 Score =  263 bits (672), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 151/315 (47%), Positives = 198/315 (62%), Gaps = 7/315 (2%)

Query: 1   MGKAAEEEHQPLPRGGTSTDPALNAEEDCRCRCSRIRKLLSVRCIXXXXXXXXXXXXXXX 60
           MGK  E++      GG +T  +      C C C  I   +  +C+               
Sbjct: 1   MGKT-EDDVSLRVAGGEATGDSTVRNARCGC-CKWISSFVGFKCLFVLLLSVALFLSALF 58

Query: 61  XXXXXXRLADQKHLHENSRYKGHDIVASFIVNKSASLLEDNIPQLADEIFDEIGAPSTKV 120
                    D++  + + R++GH IVASF +N+SAS L +N  QL ++IF E+   S KV
Sbjct: 59  LLLPFP--MDREDSNLDPRFRGHAIVASFSINRSASFLNENTLQLQNDIFQEMSYISIKV 116

Query: 121 VILSLDPLPGPNKTKVVFAVDPDVGLSEMAQAAISLIKSSFTSIIIRDSPFQLTSSSIFG 180
            IL+++P    N TKVVF +DPD G  E+   ++S IK  F S++I  S  QLT S +FG
Sbjct: 117 TILAVEPSDELNITKVVFGIDPDTGYREILPLSLSSIKEMFESVLINQSTLQLTKS-LFG 175

Query: 181 DPFFFEVLKFKGGITIIPHQTAFPLQQRQTLFTFTLNFPIYQIQLDFDELTSQLKSGLHL 240
           + F FEVLKF GGIT+IP Q+AFPLQ+ + +F FTLN+ I+QIQ++F+ L SQLK+GL+L
Sbjct: 176 ETFLFEVLKFPGGITVIPPQSAFPLQKFKIVFNFTLNYSIHQIQINFNTLASQLKNGLNL 235

Query: 241 ASFENLYMSLSNSEGSTVDAPTTVQSSVLLAIGITPSKQRLKQLAQTIMGPH--NLGLNN 298
           A +ENLY+SLSNSEGSTV  PTTV SSVLL +G + S  RLKQL  TI G    NLGLNN
Sbjct: 236 APYENLYVSLSNSEGSTVSPPTTVHSSVLLRVGTSNSSPRLKQLTDTITGSRSKNLGLNN 295

Query: 299 TEFGRVKQVRLSSIL 313
           T FG+VKQVRLSS L
Sbjct: 296 TIFGKVKQVRLSSFL 310


>AT1G10790.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: hydroxyproline-rich glycoprotein family protein
           (TAIR:AT3G56590.2); Has 78 Blast hits to 78 proteins in
           11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:3596360-3597847 FORWARD
           LENGTH=336
          Length = 336

 Score =  102 bits (254), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 124/243 (51%), Gaps = 11/243 (4%)

Query: 85  IVASFIVNKSASLLEDNIPQLADEIFDEIG-APSTKVVILSLDPLPGPNKTKVVFAVDPD 143
           + ASF + K  S +  +  ++  +I   IG + ++KV +LSL+     N T V FAV P 
Sbjct: 84  VQASFRLQKPVSEVVRHKGKIEHDILRSIGLSNNSKVTVLSLNQSGASNYTDVEFAVLPV 143

Query: 144 VGLSEMAQAAISLIKSSFTSIIIRDSPFQLTSSSIFGDPFFFEVLKFKGGITIIPHQTAF 203
               E+++ ++SL++SSF  +  + S  +LT+S  FG P  F+VLKF GGIT+ P + A 
Sbjct: 144 PPDHEISKHSLSLLRSSFVKLFAKRSKLKLTTSG-FGKPTSFQVLKFPGGITVDPLEPAP 202

Query: 204 PLQQRQTLFTFTLNFPIYQIQLDFDELTSQLKSGLHLASFENLYMSLSNSEGSTVDAPTT 263
                  LF+ T+   I  +Q   D L    +  L L  +E+++  L+N +GST+  P T
Sbjct: 203 VSGVALVLFSVTIKTSISTVQDRLDLLNGLFEHMLSLEPYESVHFQLTNKQGSTISPPLT 262

Query: 264 VQSSVLLAIGITPSK---QRLKQLAQTIMGPH--NLGLNNTEFGRVKQVRLSSILQHSLH 318
            Q    + +  T  K   QRL    Q I      NLGL+   FG VK +  S+ L   + 
Sbjct: 263 FQ----VYVAFTMRKYLHQRLNHFTQIIQTSRAKNLGLDEAVFGEVKDITFSTYLDGKVP 318

Query: 319 GND 321
            +D
Sbjct: 319 DSD 321