Miyakogusa Predicted Gene

Lj1g3v4080580.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4080580.1 tr|A8J1X1|A8J1X1_CHLRE Peroxisomal membrane
MPV17/PMP22-like protein OS=Chlamydomonas reinhardtii
GN,53.26,4e-19,seg,NULL; SUBFAMILY NOT NAMED,NULL; PEROXISOMAL
MEMBRANE PROTEIN 2, PXMP2 (MPV17),Mpv17/PMP22,CUFF.31838.1
         (206 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G19750.1 | Symbols:  | Peroxisomal membrane 22 kDa (Mpv17/PMP...   124   5e-29
AT2G14860.1 | Symbols:  | Peroxisomal membrane 22 kDa (Mpv17/PMP...    60   1e-09
AT5G43140.1 | Symbols:  | Peroxisomal membrane 22 kDa (Mpv17/PMP...    59   2e-09
AT4G33905.1 | Symbols:  | Peroxisomal membrane 22 kDa (Mpv17/PMP...    57   6e-09

>AT5G19750.1 | Symbols:  | Peroxisomal membrane 22 kDa (Mpv17/PMP22)
           family protein | chr5:6677124-6679127 FORWARD LENGTH=288
          Length = 288

 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 70/92 (76%)

Query: 103 KWSFLSWYLALLAKHPVLVKALTSALLTLIGDLVCQLVIDKVQSPDFKRTFVFSLLGFVL 162
           KWS LSWY ALL+  PVL KA+T+ALL L+GDL+CQL I+K  S D KRT  F+ LG  L
Sbjct: 111 KWSLLSWYQALLSNSPVLTKAVTAALLNLVGDLICQLTINKTSSLDKKRTLTFTFLGLGL 170

Query: 163 VGPTLHFWYFYLSKLVTLPGASGAILRLFIYQ 194
           VGPTLHFWY YLSK+VT  G SGA++RL + Q
Sbjct: 171 VGPTLHFWYLYLSKVVTASGLSGAVIRLLLDQ 202


>AT2G14860.1 | Symbols:  | Peroxisomal membrane 22 kDa (Mpv17/PMP22)
           family protein | chr2:6387820-6389563 REVERSE LENGTH=252
          Length = 252

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 106 FLSWYLALLAKHPVLVKALTSALLTLIGDLVCQLVID-KVQSPDFKRTFVFSLLGFVLVG 164
           F+ WYL ++  HPV+ K++TS+L+ +  DL  Q +     +S D  RT      G  ++G
Sbjct: 73  FVGWYLGMVKSHPVVTKSVTSSLIYIAADLSSQTIAKTSSESYDLVRTARMGGYGLFVLG 132

Query: 165 PTLHFWYFYLSKL 177
           PTLH+W+ ++S+L
Sbjct: 133 PTLHYWFNFMSRL 145


>AT5G43140.1 | Symbols:  | Peroxisomal membrane 22 kDa (Mpv17/PMP22)
           family protein | chr5:17321570-17323224 FORWARD
           LENGTH=254
          Length = 254

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 105 SFLSWYLALLAKHPVLVKALTSALLTLIGDLVCQLV-IDKVQSPDFKRTFVFSLLGFVLV 163
           +FL WYL  L  HP + K++T++++ +  DL  Q++ ++   S D  RT   +  G + +
Sbjct: 77  AFLRWYLRKLESHPFMTKSITTSVIYMAADLTSQMITMEPTGSFDLIRTARMASFGLIFL 136

Query: 164 GPTLHFWYFYLSKLV 178
           GP+ H W+ YLSK++
Sbjct: 137 GPSQHLWFSYLSKIL 151


>AT4G33905.1 | Symbols:  | Peroxisomal membrane 22 kDa (Mpv17/PMP22)
           family protein | chr4:16254065-16255592 REVERSE
           LENGTH=261
          Length = 261

 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 106 FLSWYLALLAKHPVLVKALTSALLTLIGDLVCQLVID-KVQSPDFKRTFVFSLLGFVLVG 164
           F+ WYL ++   PVL K++TS+L+ +  DL  Q +    V S D  RT      G +++G
Sbjct: 82  FIGWYLGMVKSRPVLTKSVTSSLIYIAADLSSQTIPQASVDSYDLVRTARMGGYGLLILG 141

Query: 165 PTLHFWYFYLSKL 177
           PTLH+W+  +S L
Sbjct: 142 PTLHYWFNLMSSL 154