Miyakogusa Predicted Gene

Lj1g3v4058510.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4058510.1 tr|D1LUD0|D1LUD0_MEDTR PKS (Fragment) OS=Medicago
truncatula PE=2 SV=1,50.42,0.000000000000003,seg,NULL,CUFF.31806.1
         (407 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G04190.1 | Symbols: PKS4 | phytochrome kinase substrate 4 | c...    55   6e-08

>AT5G04190.1 | Symbols: PKS4 | phytochrome kinase substrate 4 |
           chr5:1151114-1152334 FORWARD LENGTH=406
          Length = 406

 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 67/157 (42%), Gaps = 51/157 (32%)

Query: 63  DDSNSELSIFDAHKYFNELANNDTQKVTICXXXXXXXXRVSPMENERVIIPETARYSSAS 122
           ++ ++ELSIF+A  YF+E  +ND++    C        R                     
Sbjct: 49  ENEDTELSIFEARSYFSENGSNDSR----CQTRNLSGPR--------------------- 83

Query: 123 SSVDGYGGIRNYRARSFHAATPTASSEASWNSQQGLLSHP--QGAISVSVRNPTXXXXXX 180
                +  + + +  SF     TASSEASWNSQ GLLS+   QG+               
Sbjct: 84  -----FSSVASAKVSSFTVGQ-TASSEASWNSQTGLLSNKNRQGS--------------- 122

Query: 181 XXXXXHRRTSLSKSNWLLRRK-CPCSGKKSVQVEEKK 216
                 RR+S     W  RR+ CPCS  KSVQV+E K
Sbjct: 123 --DRDGRRSSKKGPRWFFRRRACPCSSSKSVQVQESK 157