Miyakogusa Predicted Gene

Lj1g3v4047380.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4047380.1 Non Chatacterized Hit- tr|I1M4I8|I1M4I8_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.19750
PE,40.82,2e-17,seg,NULL; coiled-coil,NULL,CUFF.31894.1
         (1231 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08060.2 | Symbols: MOM, MOM1 | ATP-dependent helicase family...    57   1e-07
AT1G08060.1 | Symbols: MOM, MOM1 | ATP-dependent helicase family...    57   1e-07

>AT1G08060.2 | Symbols: MOM, MOM1 | ATP-dependent helicase family
            protein | chr1:2501981-2510488 REVERSE LENGTH=2001
          Length = 2001

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 117/277 (42%), Gaps = 46/277 (16%)

Query: 828  ATQSASRVFPPLCHDPLYNELDRIRKLTEQTSKVCKDMKLQNECNYMKELVELQRKYEVK 887
            A Q   ++  P+ +DP  +EL+++R+ +E + K  ++ K   +    +++ E+Q ++  K
Sbjct: 1720 AVQPVPQIPFPVFNDPFLHELEKLRRESENSKKTFEEKKSILKAELERKMAEVQAEFRRK 1779

Query: 888  FREIEDEFQRTKKDLDTQLNTVYVHRLLAQTFKATSVDHKDWGASGMQQDASFGQQLPQL 947
            F E+E E       ++   N V +++LLA  F +   D K    SG  +     QQL Q 
Sbjct: 1780 FHEVEAEHNTRTTKIEKDKNLVIMNKLLANAFLSKCTDKK-VSPSGAPRGKI--QQLAQR 1836

Query: 948  SRQQPASLPYMVAPP---SSCGPSAAIFP-------SSHATPGSQTMLPPTLAAYSTAGV 997
            + Q  A   Y +AP    +S  P+ A+         SS   PG   + P        A  
Sbjct: 1837 AAQVSALRNY-IAPQQLQASSFPAPALVSAPLQLQQSSFPAPGPAPLQP-------QASS 1888

Query: 998  FSGVSARXXXXXXXXXXXXXXXQAGGQIRAPAPHLQPFRPSASVPAPTPPHLQPFRPSTP 1057
            F    +R                      A  P  QP +P  S  APTP       P+T 
Sbjct: 1889 FPSSVSRPSALLLNF--------------AVCPMPQPRQPLISNIAPTPS----VTPATN 1930

Query: 1058 VPPRAPS-HLQRFRPSTSFPTPAAPHLQSSRPSTSVP 1093
               R+P+ HL  +RPS+S P   A       P++SVP
Sbjct: 1931 PGLRSPAPHLNSYRPSSSTPVATA------TPTSSVP 1961


>AT1G08060.1 | Symbols: MOM, MOM1 | ATP-dependent helicase family
            protein | chr1:2501981-2510488 REVERSE LENGTH=2001
          Length = 2001

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 117/277 (42%), Gaps = 46/277 (16%)

Query: 828  ATQSASRVFPPLCHDPLYNELDRIRKLTEQTSKVCKDMKLQNECNYMKELVELQRKYEVK 887
            A Q   ++  P+ +DP  +EL+++R+ +E + K  ++ K   +    +++ E+Q ++  K
Sbjct: 1720 AVQPVPQIPFPVFNDPFLHELEKLRRESENSKKTFEEKKSILKAELERKMAEVQAEFRRK 1779

Query: 888  FREIEDEFQRTKKDLDTQLNTVYVHRLLAQTFKATSVDHKDWGASGMQQDASFGQQLPQL 947
            F E+E E       ++   N V +++LLA  F +   D K    SG  +     QQL Q 
Sbjct: 1780 FHEVEAEHNTRTTKIEKDKNLVIMNKLLANAFLSKCTDKK-VSPSGAPRGKI--QQLAQR 1836

Query: 948  SRQQPASLPYMVAPP---SSCGPSAAIFP-------SSHATPGSQTMLPPTLAAYSTAGV 997
            + Q  A   Y +AP    +S  P+ A+         SS   PG   + P        A  
Sbjct: 1837 AAQVSALRNY-IAPQQLQASSFPAPALVSAPLQLQQSSFPAPGPAPLQP-------QASS 1888

Query: 998  FSGVSARXXXXXXXXXXXXXXXQAGGQIRAPAPHLQPFRPSASVPAPTPPHLQPFRPSTP 1057
            F    +R                      A  P  QP +P  S  APTP       P+T 
Sbjct: 1889 FPSSVSRPSALLLNF--------------AVCPMPQPRQPLISNIAPTPS----VTPATN 1930

Query: 1058 VPPRAPS-HLQRFRPSTSFPTPAAPHLQSSRPSTSVP 1093
               R+P+ HL  +RPS+S P   A       P++SVP
Sbjct: 1931 PGLRSPAPHLNSYRPSSSTPVATA------TPTSSVP 1961