Miyakogusa Predicted Gene

Lj1g3v4012930.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4012930.1 Non Chatacterized Hit- tr|K3ZIR8|K3ZIR8_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si026470,26.53,8e-18,F_box_assoc_1: F-box protein interaction
domain,F-box associated interaction domain; seg,NULL;
F-box,gene.g35928.t1.1
         (396 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G07610.1 | Symbols:  | F-box family protein | chr5:2406068-24...   102   6e-22
AT3G17570.1 | Symbols:  | F-box and associated interaction domai...    50   3e-06
AT2G04920.1 | Symbols:  | F-box and associated interaction domai...    49   4e-06
AT5G49610.1 | Symbols:  | F-box family protein | chr5:20131448-2...    49   5e-06
AT3G23880.1 | Symbols:  | F-box and associated interaction domai...    49   7e-06
AT3G17280.1 | Symbols:  | F-box and associated interaction domai...    49   7e-06

>AT5G07610.1 | Symbols:  | F-box family protein |
           chr5:2406068-2407330 FORWARD LENGTH=420
          Length = 420

 Score =  102 bits (253), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 115/400 (28%), Positives = 177/400 (44%), Gaps = 64/400 (16%)

Query: 5   GSTSAEEVARSRDTLSAILFRLPPKPLIQLKLVSKGWLILISDYRFRRSHYLRHNPAALL 64
            S+SA  VA   D L  IL  LP K L++ K VSK WL LI++  F       ++P  L 
Sbjct: 24  SSSSATIVADIDDVLIQILSFLPIKTLLRFKRVSKRWLSLITNPVFSNRVIKSNHP--LP 81

Query: 65  LSNKYGPLPRSHILSFTTTTATIRDLDLDFLTNHI-------FRAKRVDTVVC-SCNGVL 116
           +S  +   PR    SF +       LD D     I       F   + D ++  S NG+L
Sbjct: 82  ISGFFLHSPREIKYSFVS-------LDDDATNQRISSSLPLWFTDHQTDMIIMQSTNGLL 134

Query: 117 LCRSA--------TSHFICNPXXXXXXXXXXPKQRSKNNQ---ECAFYLAFDPSTSPHYE 165
           LC+ +        T++++ NP           KQ +  +Q     A  LAFDPS SPHY+
Sbjct: 135 LCKCSCASSNHFNTNYYVYNPTT---------KQYTLLHQIAGHIALSLAFDPSRSPHYK 185

Query: 166 IVLLRIWGGVKPPFRCV-------FSVYSSKTRSWRDSASGVSFNAQFRLNDANGVYSNR 218
           +  LR  G     F            VYSS    WR      +  + F +  +  V+ N 
Sbjct: 186 VFCLR--GRSNNSFSSASDSELYHIEVYSSNEGLWRRVVPVPTSPSTF-IEFSYSVFWNG 242

Query: 219 AIHWFNKAAELSGDCTGGMYFDIDARCLKELPMPLFDDSESESV----NRNVKYFGESGG 274
           A++W+  +   S DC   + FDI+ + +K LP+P   D E E       R + +  ES G
Sbjct: 243 AVNWYGFS---SRDC---LSFDINTQEIKILPLP---DHEHEDEPLPDPRILMFLDESQG 293

Query: 275 CLQLI-IGIKETLKFDVFELKEDYSAWSLIHSVNLNPTRVKFPEL--SHWDMPNSVVPF- 330
            L  I +  + +    V+E++ + S+WS+ ++V+L P    FPE+  + +     +  F 
Sbjct: 294 NLYYIEVNNQSSSNLRVYEMESNSSSWSVKYNVDLEPLAAAFPEMIRTEYYTDRRIYAFS 353

Query: 331 YIARPSEEKNSXXXXXXXXXXXXXXYDPVDRTSRKLCDLK 370
            I    EE ++              Y+ +D+T +KLCD K
Sbjct: 354 VIGFVKEETDAASYILLHIPNQAVKYNFIDKTFKKLCDFK 393


>AT3G17570.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:6009413-6010558
           FORWARD LENGTH=381
          Length = 381

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 83/218 (38%), Gaps = 20/218 (9%)

Query: 16  RDTLSAILFRLPPKPLIQLKLVSKGWLILISDYRFRRSHYLRHNPAALLLSNKYGPLPRS 75
           RD  + IL R+P   L +LK   K W  L  D  F + H  R     +        L   
Sbjct: 7   RDLETEILSRVPATSLQKLKPTCKRWYTLFKDPEFLKKHVGRAEREVI-------SLMSL 59

Query: 76  HILSFTTTTATIR-DLDLDFLTNHIFRAKRVD-TVVCSCNGVLLCRSATSHFICNPXXXX 133
            + S +   + I   +++  + N +  ++ V  + +  CNG+LLC +  S  +       
Sbjct: 60  RVYSLSVNLSGIHSSVEMTGMLNSLKDSEDVKISDITECNGLLLCTTDDSRLVVWNPYTG 119

Query: 134 XXXXXXPKQRSKNNQECAFYLAFDPSTSPHYEIVLLRIWGGVKPPFRCVFSVYSSKTRSW 193
                  K  S       F L +D +    Y   +LR + G+   F   F +Y   + SW
Sbjct: 120 ETRWIPYKSNSPYEMYQKFVLGYDNTNKSRYSYKILRCYHGL-IDFGYEFEIYEFNSHSW 178

Query: 194 R---DSASGVSFNAQFRLNDANGVYSNRAIHWFNKAAE 228
           R   D++   SF       ++ GV      +WF    E
Sbjct: 179 RRFYDNSPNCSF-------ESKGVTLKGNTYWFASDTE 209


>AT2G04920.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr2:1726138-1727268
           FORWARD LENGTH=376
          Length = 376

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 94/253 (37%), Gaps = 40/253 (15%)

Query: 17  DTLSAILFRLPPKPLIQLKLVSKGWLILISDYRFRRSHYLRH-NPAALLLSNKYGPLPRS 75
           D +  IL R+P   L +L+   K W  L  + RF   H+ +    + +LL   Y   P S
Sbjct: 7   DLVEDILSRVPATSLKRLRFTCKQWNSLFKNRRFTEKHFCKAPKQSHVLLWKDYTVCPMS 66

Query: 76  HILSFTTTTATIRDL----DLDFLTNHIFRAKRVDTVVCSCNGVLLCRSATSHFIC-NPX 130
             L+F+ ++   + +    D  + +  ++ AK     V  C+G+LLC +     +  NP 
Sbjct: 67  INLNFSGSSIEFKSVLSLKDSHYNSEQVYIAK-----VFHCDGLLLCTTKDHRLLVWNPC 121

Query: 131 XXXX-----XXXXXPKQR----SKNNQECAFYLAFDPSTSPHYEIVLLRIWGGVKPP--F 179
                         P  R     KNN+ C  Y              +LR W     P   
Sbjct: 122 LGETRWINFENDYKPYSRFSLGYKNNKSCRSY-------------KILRFWTSYLTPNHI 168

Query: 180 RCVFSVYSSKTRSWRDSASGVSFNAQFRLNDANGVYSNRAIHWFNKAAELSGDCTGGMYF 239
              +++Y   T SWR     VS N  F +   NGV      +W      L  +    + F
Sbjct: 169 GLRYNIYEFTTDSWRVLIDKVSLN-YFLIESENGVSFKGNTYWL----ALDEETNFLLGF 223

Query: 240 DIDARCLKELPMP 252
           D      K L +P
Sbjct: 224 DFTMERFKRLCLP 236


>AT5G49610.1 | Symbols:  | F-box family protein |
           chr5:20131448-20132527 REVERSE LENGTH=359
          Length = 359

 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 128/315 (40%), Gaps = 37/315 (11%)

Query: 17  DTLSAILFRLPPKPLIQLKLVSKGWLILISDYRFRRSHYLRHNPAALLLSNKYGPLPRSH 76
           + +  IL RLP K L + K V K W  L SD  F            LL++     +  S 
Sbjct: 12  EVILQILARLPVKSLFRFKSVCKSWYRLPSDKYFTSLFNQLSVKEQLLVAE----VSDSS 67

Query: 77  ILSFTTTTATIRDLDLDFLTNHIFRAKRVDTVVCSCNGVLLCRSATS---HFICNPXXXX 133
            L        + +L LDF+ + +        +  S NG+L C S      +++CNP    
Sbjct: 68  SLICVDNLRGVSELSLDFVRDRV-------RIRVSSNGLLCCSSIPEKGVYYVCNP--ST 118

Query: 134 XXXXXXPKQRSK-------NNQECAFYLAFDPSTSPHYEIVLLRIWG--GVKPPFRCVFS 184
                 PK R +       + +     LA D S +  + +VL       G +P    +  
Sbjct: 119 REYRKLPKSRERPVTRFYPDGEATLVGLACDLSKN-KFNVVLAGYHRSFGQRPDGSFICL 177

Query: 185 VYSSKTRSWRDSASGVSFNAQFRLNDANGVYSNRAIHWFNKAAELSGDCTGGMYFDIDAR 244
           V+ S++  WR   S +   +   ++    V+ N  +HW      +SG C   +  D++  
Sbjct: 178 VFDSESNKWRKFVSVLEECSFTHMSKNQVVFVNGMLHWL-----MSGLCY-ILALDVEHD 231

Query: 245 CLKELPMPLFDDSESESVNRNVKYFGESGGCLQLIIGIKETLKFDVFELKE-DYSAWSLI 303
             +++ +P  D+    +   N  Y  ES G L +I      +K  ++++ E +   WS++
Sbjct: 232 VWRKISLP--DEIRIGNGGGNRVYLLESDGFLSVIQLSDVWMK--IWKMSEYETETWSVV 287

Query: 304 HSVNLNPTRVKFPEL 318
            S++L   +   P +
Sbjct: 288 DSISLRCIKGLVPGI 302


>AT3G23880.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:8622061-8623155
           REVERSE LENGTH=364
          Length = 364

 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 127/308 (41%), Gaps = 41/308 (13%)

Query: 17  DTLSAILFRLPPKPLIQLKLVSKGWLILISDYRFRRSHYLRHNPAALLLSNK--YGPLP- 73
           + +  IL RLP K L + K V   W  LIS+  F   H L    +    S K  YG +  
Sbjct: 17  EMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALILETSKATTSTKSPYGVITT 76

Query: 74  -RSHILS------FTTTTATIRDLDLDFLTNHIFRAKRVDTVVCSCNGVLLCRSA---TS 123
            R H+ S      +  +T  + + D + L    ++      VV +C+G L+C       S
Sbjct: 77  SRYHLKSCCIHSLYNASTVYVSEHDGELLGRDYYQ------VVGTCHG-LVCFHVDYDKS 129

Query: 124 HFICNPXXXXXXXXXXPKQRSKNNQECAFY-LAFDPSTSPHYEIVLLRIWGGVKPPFRCV 182
            ++ NP              + +++    Y   +D S   +  + LL+    VK   +  
Sbjct: 130 LYLWNPTIKLQQRLSSSDLETSDDECVVTYGFGYDESEDDYKVVALLQQRHQVKIETK-- 187

Query: 183 FSVYSSKTRSWRDSASGVSFNAQFRLNDA--NGVYSNRAIHWFNKAAELSGDCTGGMYFD 240
             +YS++ + WR   S  SF +   + D   +G+Y N  +   N AA  S      + +D
Sbjct: 188 --IYSTRQKLWR---SNTSFPSGVVVADKSRSGIYINGTL---NWAATSSSSSWTIISYD 239

Query: 241 IDARCLKELPMPLFDDSESESVNRNVKYFGESGGCLQLIIGIKETLKFDVFELKE--DYS 298
           +     KELP P+       ++       G+  GCL ++   K     DV+ +KE  +  
Sbjct: 240 MSRDEFKELPGPVCCGRGCFTMT-----LGDLRGCLSMVCYCKGA-NADVWVMKEFGEVY 293

Query: 299 AWSLIHSV 306
           +WS + S+
Sbjct: 294 SWSKLLSI 301


>AT3G17280.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:5903453-5904613
           REVERSE LENGTH=386
          Length = 386

 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 94/248 (37%), Gaps = 31/248 (12%)

Query: 17  DTLSAILFRLPPKPLIQLKLVSKGWLILISDYRF---------RRSHYLRHNPAALLLSN 67
           D L  IL RLP K + +LK   K W  L  D +F         R + +L ++    +  +
Sbjct: 10  DLLPEILSRLPTKSIPKLKTTCKKWYALFKDPKFVEKKLGKAARETVFLMNHEVNSISVD 69

Query: 68  KYGPLPRSHILS--FTTTTATIRDLDLDFLTNHIFRAKRVDTVVCSCNGVLLCRSATSHF 125
            +G +P+ + +S  FT T       DL+     IFR       +  CNG+ LC +     
Sbjct: 70  IHG-IPKGYSVSMDFTGTLTIPEGSDLE-----IFR-------IHHCNGLFLCATMNCRL 116

Query: 126 ICNPXXXXXXXXXXPKQRSKNNQECAFYLAFDPSTSPHYEIVLLRIWGGVKPPFRCVFSV 185
           +             P+ R  ++   A     D S+S H   +L       K P   V  +
Sbjct: 117 VVWNPCTGQITWIIPRTRYDSDDIYALGCGDDKSSSLHSYKILRCCDDNQKKP---VSEI 173

Query: 186 YSSKTRSWRDSASGVSFNAQFRLNDANGVYSNRAIHWFNKAAELSGDCTGGMYFDIDARC 245
           Y   + SWR    GV+ N      + NGV    + +W+      +      + FD     
Sbjct: 174 YDFSSSSWR-VLDGVTANC---FIECNGVALKESAYWYASDKRETPKGKFILRFDFATER 229

Query: 246 LKELPMPL 253
              L +PL
Sbjct: 230 FARLCLPL 237