Miyakogusa Predicted Gene

Lj1g3v4012920.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4012920.1 tr|G7L2N3|G7L2N3_MEDTR F-box protein SKIP24
OS=Medicago truncatula GN=MTR_7g087170 PE=4
SV=1,49.31,2e-18,F-box-like,NULL; F-box domain,F-box domain,
cyclin-like; seg,NULL; no description,NULL,CUFF.31777.1
         (204 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08710.1 | Symbols:  | F-box family protein | chr1:2771720-27...   213   9e-56
AT1G08710.2 | Symbols:  | F-box family protein | chr1:2771720-27...   213   1e-55

>AT1G08710.1 | Symbols:  | F-box family protein |
           chr1:2771720-2773250 FORWARD LENGTH=274
          Length = 274

 Score =  213 bits (541), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 102/186 (54%), Positives = 136/186 (73%)

Query: 14  SSLPEELWRRILEIGVESSGFTYKDLCCISISCRRFHRLSSDDSLWNXXXXXXXXXXXXX 73
           + +P+ELWR+ILEIGV+SS F+YKDLCCISIS RR  RLS DDSLW+             
Sbjct: 4   NEIPDELWRKILEIGVKSSTFSYKDLCCISISSRRLFRLSCDDSLWDLLLVHDFPNHIVS 63

Query: 74  XXXXXXXXXXXXYKLRFERDKERRIAAHKRVVLRKESQVAEHSRKLRNIQTRVAEESIKA 133
                       Y  RFER+KER++AAH+R +LRKES+++E  R++R ++ R+++E+ + 
Sbjct: 64  ASSSSESPTKFIYMTRFEREKERKLAAHRRALLRKESEISEWGRRIRELEARLSDEAERL 123

Query: 134 GETAVELSSLRRIRQASVALNVWQPEVVRGRQKQMVEQCAVPAESRIHALEMELRLCKQQ 193
             ++++ S L ++RQASVALNVWQPEVVRGRQKQMVEQ AVP E R+ ALEME++LCKQQ
Sbjct: 124 QSSSLQFSDLLKVRQASVALNVWQPEVVRGRQKQMVEQNAVPVEGRLRALEMEMKLCKQQ 183

Query: 194 IMGLEK 199
           IMGL +
Sbjct: 184 IMGLNR 189


>AT1G08710.2 | Symbols:  | F-box family protein |
           chr1:2771720-2773011 FORWARD LENGTH=295
          Length = 295

 Score =  213 bits (541), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 102/186 (54%), Positives = 136/186 (73%)

Query: 14  SSLPEELWRRILEIGVESSGFTYKDLCCISISCRRFHRLSSDDSLWNXXXXXXXXXXXXX 73
           + +P+ELWR+ILEIGV+SS F+YKDLCCISIS RR  RLS DDSLW+             
Sbjct: 4   NEIPDELWRKILEIGVKSSTFSYKDLCCISISSRRLFRLSCDDSLWDLLLVHDFPNHIVS 63

Query: 74  XXXXXXXXXXXXYKLRFERDKERRIAAHKRVVLRKESQVAEHSRKLRNIQTRVAEESIKA 133
                       Y  RFER+KER++AAH+R +LRKES+++E  R++R ++ R+++E+ + 
Sbjct: 64  ASSSSESPTKFIYMTRFEREKERKLAAHRRALLRKESEISEWGRRIRELEARLSDEAERL 123

Query: 134 GETAVELSSLRRIRQASVALNVWQPEVVRGRQKQMVEQCAVPAESRIHALEMELRLCKQQ 193
             ++++ S L ++RQASVALNVWQPEVVRGRQKQMVEQ AVP E R+ ALEME++LCKQQ
Sbjct: 124 QSSSLQFSDLLKVRQASVALNVWQPEVVRGRQKQMVEQNAVPVEGRLRALEMEMKLCKQQ 183

Query: 194 IMGLEK 199
           IMGL +
Sbjct: 184 IMGLNR 189