Miyakogusa Predicted Gene

Lj1g3v4012770.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4012770.1 Non Chatacterized Hit- tr|D8QX07|D8QX07_SELML
Putative uncharacterized protein OS=Selaginella
moelle,25.93,3e-18,zf-RanBP,Zinc finger, RanBP2-type; no
description,NULL; seg,NULL; ZF_RANBP2_2,Zinc finger,
RanBP2-ty,CUFF.31766.1
         (817 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G17790.1 | Symbols: VAR3 | zinc finger (Ran-binding) family p...   389   e-108
AT1G55040.1 | Symbols:  | zinc finger (Ran-binding) family prote...   157   4e-38
AT1G48570.1 | Symbols:  | zinc finger (Ran-binding) family prote...   124   4e-28
AT1G70650.1 | Symbols:  | Ran BP2/NZF zinc finger-like superfami...   120   5e-27
AT1G70650.2 | Symbols:  | Ran BP2/NZF zinc finger-like superfami...   119   7e-27

>AT5G17790.1 | Symbols: VAR3 | zinc finger (Ran-binding) family
           protein | chr5:5869810-5872671 REVERSE LENGTH=758
          Length = 758

 Score =  389 bits (998), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 238/572 (41%), Positives = 321/572 (56%), Gaps = 73/572 (12%)

Query: 84  PECSRFLSHISSVGYATTAPETG------FPATGELSQREVSACLAFARDRPNLLRLLSM 137
           PE +  L  +S  GY + +          FP   +   R   ACLA AR+RP LL +LS 
Sbjct: 93  PEWTELLQSLSKAGYFSDSGSISGLESEFFPGFPDELLRPALACLALARERPELLEMLSR 152

Query: 138 RDIAVVVEHGTPFLFPDAEDSMRKMKSLVQ---YGDSTVLDTDRPNMVDLMKFLLSYASN 194
           RD+ V+VE+G PFLF    DS+++M   ++    G   ++D ++ + VDLM+ +LSY  +
Sbjct: 153 RDVEVLVENGKPFLFKTGPDSLKRMSLYLRSGLQGIGKLMDMEKASTVDLMRLILSYVVD 212

Query: 195 PSATSESNSLYNRDLVESSVRNLFGELFKLSYNAPGPNSFDSVQNQMPGRFERAMPPGQR 254
             A+SE +  +N++++ESSVR+L  ++ K+S   P  N  D++QNQ   R  + +   Q 
Sbjct: 213 -VASSEESKQHNKEIMESSVRSLLSQIAKMSLRPPESNVHDTMQNQYSDRDGQGVRSFQN 271

Query: 255 -IEMKRGDWICPRCNFMNFARNTKCLDCEEARPKRQLTGGEWECPQCDFCNYGRNVTCLR 313
            +EMKRGDWIC RC+ MNFARN KC  C+EARPKRQLTG EWECPQCDF NYGRNV CLR
Sbjct: 272 NVEMKRGDWICSRCSGMNFARNVKCFQCDEARPKRQLTGSEWECPQCDFYNYGRNVACLR 331

Query: 314 CDCKRPGQISLGATNPVSHVGYGNGNNSDMS---DVDARLAANEEKAQRWFNKVSQLDSN 370
           CDCKRP   SL            N  NSD S   +++ RL  NE+KAQRW +KV+Q    
Sbjct: 332 CDCKRPRDSSL------------NSANSDYSSDPELERRLVENEKKAQRWLSKVAQ--GG 377

Query: 371 ADINSVMADEDFPEIMPLRKGVNRFVVSTRKTPLERRLGNAQYK------SNLGDNDIPG 424
           +D NSV  DEDFPEIMPLRKGVNR+VVSTRK PLERRL N + +      S   D++  G
Sbjct: 378 SDANSVDTDEDFPEIMPLRKGVNRYVVSTRKPPLERRLANTENRVATDGNSKRSDDNALG 437

Query: 425 VEDFKA----------GLPQSDKKNIGAEQDTSRYG-----PPSIASNASNFKDVKGXXX 469
            +  ++             +SD KN+ + +  S  G      P +   +  F        
Sbjct: 438 SKTTRSLNEILGSSSSLTSRSDDKNVSSRRFESSQGINTDFVPFVPLPSDMFAKKPKEET 497

Query: 470 XXXXXXXXXXDALPQKSENLRAEDRKTAPLGANVGYVSPGGDNPHFSNNTTSENVEKEKE 529
                     D     ++N+  ED+                D  H    T  + +EKE  
Sbjct: 498 QIGLIDNIQVDGFSGGNQNVYQEDK---------------SDANHSGKET--DRLEKEDH 540

Query: 530 QAEKSERWFRKVVELHDASDMTSAVSDEDFPDIMPMRKGENRFVVSKKKDRSLTSPAYKR 589
           ++E+  RWF++V ELH+ SD+ SA+  E  P+ MPMRKGENRFVVS+KKDRSLTSPAYKR
Sbjct: 541 KSEEPARWFKRVTELHNVSDLESAIPQEISPEKMPMRKGENRFVVSRKKDRSLTSPAYKR 600

Query: 590 RLAVEQSGNTNXXXXXXXXXDYFAKKDKQQQE 621
                   +++         DYFA K+KQ +E
Sbjct: 601 ------PEDSDFVPFVPFPPDYFA-KEKQPKE 625



 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/63 (87%), Positives = 60/63 (95%)

Query: 755 GKSLEGSAVKEPDPLDMSEEAKAERWFRRVSQIKDISELSQIPDEDFPSIMPMRKGVNRF 814
           GKSLEGS VKE D LDMSEEAKAERWF+RV++IK+ISELS+IPDEDFPSIMPMRKGVNRF
Sbjct: 664 GKSLEGSLVKESDLLDMSEEAKAERWFKRVAEIKNISELSEIPDEDFPSIMPMRKGVNRF 723

Query: 815 VVS 817
           VVS
Sbjct: 724 VVS 726



 Score = 79.3 bits (194), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 57/76 (75%), Gaps = 6/76 (7%)

Query: 341 SDMSDVDARLAANEEKAQRWFNKVSQLDSNADINSVMADEDFPEIMPLRKGVNRFVVSTR 400
           SD+ D+     + E KA+RWF +V+++ + ++++ +  DEDFP IMP+RKGVNRFVVS R
Sbjct: 675 SDLLDM-----SEEAKAERWFKRVAEIKNISELSEI-PDEDFPSIMPMRKGVNRFVVSKR 728

Query: 401 KTPLERRLGNAQYKSN 416
           KTPLERRL + +++ N
Sbjct: 729 KTPLERRLTSQRHQRN 744



 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 49/70 (70%), Gaps = 4/70 (5%)

Query: 533 KSERWFRKVVELHDASDMTSAVSDEDFPDIMPMRKGENRFVVSKKK---DRSLTSPAYKR 589
           K+ERWF++V E+ + S++ S + DEDFP IMPMRKG NRFVVSK+K   +R LTS  ++R
Sbjct: 685 KAERWFKRVAEIKNISEL-SEIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSQRHQR 743

Query: 590 RLAVEQSGNT 599
              +  S  T
Sbjct: 744 NPHITNSDPT 753



 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 49/76 (64%), Gaps = 7/76 (9%)

Query: 746 NQNVRAEWTGKSLEGSAVKEPDPLDMSEEAKAE---RWFRRVSQIKDISEL-SQIPDEDF 801
           NQNV  E   KS    + KE D L+  E+ K+E   RWF+RV+++ ++S+L S IP E  
Sbjct: 514 NQNVYQE--DKSDANHSGKETDRLE-KEDHKSEEPARWFKRVTELHNVSDLESAIPQEIS 570

Query: 802 PSIMPMRKGVNRFVVS 817
           P  MPMRKG NRFVVS
Sbjct: 571 PEKMPMRKGENRFVVS 586


>AT1G55040.1 | Symbols:  | zinc finger (Ran-binding) family protein
           | chr1:20534895-20538901 FORWARD LENGTH=849
          Length = 849

 Score =  157 bits (396), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 88/229 (38%), Positives = 122/229 (53%), Gaps = 24/229 (10%)

Query: 120 ACLAFARDRPNLLRLLSMRDIAVVVEHGTPFLFPDAEDSMRKMKSLVQYGDSTVLDT--- 176
           AC  F +DR ++LR LS  DI ++V HG P        S + ++  V   +  V  +   
Sbjct: 209 ACSNFGKDRFDILRSLSRNDIQILVGHGCPATDRKVVFSGKLLRKRVHLDEGDVCSSCSL 268

Query: 177 --------------DRPNMVDLMKFLLSYASNP-SATSESNSLYNRDLVESSVRNLFGEL 221
                         D    +DLM+ L +Y  +P + T  + SL  +  V+S VR L  E+
Sbjct: 269 RNSCEKAFLLTNKEDEARTIDLMRILFTYGFDPLNGTVANKSLLKKKSVKSVVRKLLHEI 328

Query: 222 FKLSYNAPGPNSFDSVQNQMPGRFERAMPPGQR------IEMKRGDWICPRCNFMNFARN 275
            KLS     PN    V  + P + ++  P  +R      +EMK+GDW+CP+C+FMNFA+N
Sbjct: 329 VKLSAVPIDPNLTPPVIKRAPPKVKQPPPTPKRRVGRDDVEMKKGDWLCPKCDFMNFAKN 388

Query: 276 TKCLDCEEARPKRQLTGGEWECPQCDFCNYGRNVTCLRCDCKRPGQISL 324
           T CL C+  RPKRQL  GEWECP+C+F NY RN+ C  CDCKRP    L
Sbjct: 389 TICLQCDAKRPKRQLLPGEWECPECNFLNYRRNMACFHCDCKRPADAIL 437


>AT1G48570.1 | Symbols:  | zinc finger (Ran-binding) family protein
           | chr1:17955455-17957661 REVERSE LENGTH=455
          Length = 455

 Score =  124 bits (310), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 138/319 (43%), Gaps = 78/319 (24%)

Query: 78  LTTHPWPECSRFLSHISSVGYATTAPETGFPATGELSQREVSACLAFARDRPNLLRLLSM 137
           LT HPWPE   F+  + + GY T   E        +  ++  ACL+FARDR ++LR LS 
Sbjct: 57  LTPHPWPEWITFVDRLKTKGYFTKDTEDDTVYQEMILVKD--ACLSFARDRYDVLRSLSS 114

Query: 138 RDIAVVVEHGTPFLFPDAEDSMRKMKSLVQYGDSTVL-------DTDRPNM--------- 181
            D+  +VE G P LF    +S +++++ V+  +  V          DR  +         
Sbjct: 115 GDVQALVERGCPNLFRKTVNSSKRIRAHVKLNEGDVCGSCDLRSSCDRAYVILKDTEADA 174

Query: 182 --VDLMKFLLSYASNPSATSESNSLYNRDLVESSVRNLFGELFKLSYN-----APGPNSF 234
             VD+M+ LL  A +    S       ++LV  S R L  EL + S        P P+S 
Sbjct: 175 RTVDVMRLLLFNALDSIVISRGEVPPGKELVHESARRLLLELVEFSEKPLIPALPKPSSK 234

Query: 235 DSVQNQMPGRFERAMP-----PGQRIEMK------------------------------- 258
           +S    +P + ERA       P QR+  K                               
Sbjct: 235 ES---SLPSK-ERAFKSRNDEPSQRVAFKSRNDDPSQRVAFKSRNDEPSHRVAFKSRNDE 290

Query: 259 ---------RGDWICPRCNFMNFARNTKCLDCEEARPKRQLTG----GEWECPQCDFCNY 305
                      DW CP+C+F+NFARN +C +C E   +R +      G+W CP+C F N+
Sbjct: 291 SSQRDRPLYSADWACPKCDFVNFARNERCRECNEVADRRPVAAVVKEGDWLCPECSFLNF 350

Query: 306 GRNVTCLRCDCKRPGQISL 324
            RN +CL+C  K P + S+
Sbjct: 351 TRNQSCLKCKAKGPKKTSM 369



 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 45/67 (67%)

Query: 255 IEMKRGDWICPRCNFMNFARNTKCLDCEEARPKRQLTGGEWECPQCDFCNYGRNVTCLRC 314
           +EMK+GDW C  C +MNFA N +C +C E R K     G+WECP CDF N+ RN  C +C
Sbjct: 373 VEMKKGDWNCTGCGYMNFASNKQCRECREQRHKTLAEPGDWECPSCDFVNFRRNDACKKC 432

Query: 315 DCKRPGQ 321
           +CKRP Q
Sbjct: 433 ECKRPSQ 439


>AT1G70650.1 | Symbols:  | Ran BP2/NZF zinc finger-like superfamily
           protein | chr1:26638158-26640126 FORWARD LENGTH=466
          Length = 466

 Score =  120 bits (300), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 127/308 (41%), Gaps = 78/308 (25%)

Query: 79  TTHPWPECSRFLSHISSVGYATTAPETGFPATGELSQREV-SACLAFARDRPNLLRLLSM 137
           ++HPWPE    +  ++  GY     E+  P         + +ACL FAR R  L+R LS 
Sbjct: 42  SSHPWPEWLDLMGMLAKKGYF---EESLIPLMSSKESNHIRTACLNFARHRFTLVRNLSK 98

Query: 138 RDIAVVVEHGTPFLFPDAEDSMRKMKSLVQYGDSTVL-----------------DTDRPN 180
           +DI V+   G P       +S +++++ V   +  V                  D +   
Sbjct: 99  KDIKVIAGCGCPSTDRKVVNSGKRLRAYVGIDEGNVCGSCNLRGKCERAYAQARDDEGAR 158

Query: 181 MVDLMKFLLSYASNPSATSESNSLYNRDLVESSVRNLFGELFKLSYNAPGPNSFDSVQNQ 240
            +D+M+ LL+Y  +  + +  N      LVE SVR L  E    S        F+S + +
Sbjct: 159 TIDVMRLLLTYGLDSISPTVENRACQTKLVEDSVRKLLRESVAYSLT-----DFESAETE 213

Query: 241 MPGRFERAMPPGQRIE-------------------------------------------- 256
             G  +   P  Q I+                                            
Sbjct: 214 TAG--DELQPNSQDIDERDPRKRPGDWYCTECKFLNFAKNIRCLRCDVFSEERLKQLKEE 271

Query: 257 ------MKRGDWICPRCNFMNFARNTKCLDCEEARPKRQLTGGEWECPQCDFCNYGRNVT 310
                 +K+GDWIC  CNF+NF++NT+CL C++    RQ+  GEWEC  C++ N+ RN  
Sbjct: 272 QKDHLPLKKGDWICQTCNFLNFSKNTRCLRCKDKPTLRQINPGEWECESCNYINFRRNSI 331

Query: 311 CLRCDCKR 318
           CL+CD KR
Sbjct: 332 CLKCDHKR 339


>AT1G70650.2 | Symbols:  | Ran BP2/NZF zinc finger-like superfamily
           protein | chr1:26638158-26641949 FORWARD LENGTH=595
          Length = 595

 Score =  119 bits (299), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 127/308 (41%), Gaps = 78/308 (25%)

Query: 79  TTHPWPECSRFLSHISSVGYATTAPETGFPATGELSQREV-SACLAFARDRPNLLRLLSM 137
           ++HPWPE    +  ++  GY     E+  P         + +ACL FAR R  L+R LS 
Sbjct: 42  SSHPWPEWLDLMGMLAKKGYF---EESLIPLMSSKESNHIRTACLNFARHRFTLVRNLSK 98

Query: 138 RDIAVVVEHGTPFLFPDAEDSMRKMKSLVQYGDSTVL-----------------DTDRPN 180
           +DI V+   G P       +S +++++ V   +  V                  D +   
Sbjct: 99  KDIKVIAGCGCPSTDRKVVNSGKRLRAYVGIDEGNVCGSCNLRGKCERAYAQARDDEGAR 158

Query: 181 MVDLMKFLLSYASNPSATSESNSLYNRDLVESSVRNLFGELFKLSYNAPGPNSFDSVQNQ 240
            +D+M+ LL+Y  +  + +  N      LVE SVR L  E    S        F+S + +
Sbjct: 159 TIDVMRLLLTYGLDSISPTVENRACQTKLVEDSVRKLLRESVAYSLT-----DFESAETE 213

Query: 241 MPGRFERAMPPGQRIE-------------------------------------------- 256
             G  +   P  Q I+                                            
Sbjct: 214 TAG--DELQPNSQDIDERDPRKRPGDWYCTECKFLNFAKNIRCLRCDVFSEERLKQLKEE 271

Query: 257 ------MKRGDWICPRCNFMNFARNTKCLDCEEARPKRQLTGGEWECPQCDFCNYGRNVT 310
                 +K+GDWIC  CNF+NF++NT+CL C++    RQ+  GEWEC  C++ N+ RN  
Sbjct: 272 QKDHLPLKKGDWICQTCNFLNFSKNTRCLRCKDKPTLRQINPGEWECESCNYINFRRNSI 331

Query: 311 CLRCDCKR 318
           CL+CD KR
Sbjct: 332 CLKCDHKR 339