Miyakogusa Predicted Gene

Lj1g3v4012760.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4012760.2 tr|G7KHU6|G7KHU6_MEDTR Frataxin OS=Medicago
truncatula GN=MTR_6g071700 PE=4 SV=1,67.61,2e-19,FRATAXIN_1,Frataxin
conserved site; Frataxin_Cyay,Frataxin/CyaY; seg,NULL;
FRATAXIN,Frataxin/CyaY; F,CUFF.31767.2
         (173 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G03240.1 | Symbols: ATFH, FH | frataxin homolog | chr4:142368...   124   4e-29

>AT4G03240.1 | Symbols: ATFH, FH | frataxin homolog |
           chr4:1423685-1424758 REVERSE LENGTH=187
          Length = 187

 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 71/100 (71%)

Query: 74  SEVPTAVDYRSLMEESEYHSLAESTIHNLQEKLEXXXXXXXXXXXXXXXXXXVLTVKLGD 133
           S+ P +VDY S+++E E+H LA  TI++L EK+E                  VLT+KLG 
Sbjct: 64  SQGPASVDYSSVLQEEEFHKLANFTINHLLEKIEDYGDNVQIDGFDIDYGNEVLTLKLGS 123

Query: 134 LGTYVLNKQTPNRQIWLSSPVSGPSRFDWDQDTKAWIYRR 173
           LGTYVLNKQTPNRQIW+SSPVSGPSRFDWD+D  AWIYRR
Sbjct: 124 LGTYVLNKQTPNRQIWMSSPVSGPSRFDWDRDANAWIYRR 163