Miyakogusa Predicted Gene

Lj1g3v3992540.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3992540.1 tr|Q2A0L6|Q2A0L6_MAIZE WOX9B protein (Fragment)
OS=Zea mays GN=wox9B PE=2 SV=1,71.67,1e-18,seg,NULL;
Homeobox,Homeodomain; HOMEOBOX_2,Homeodomain; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,N,CUFF.31747.1
         (282 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G17810.2 | Symbols: WOX12 | WUSCHEL related homeobox 12 | chr...   124   9e-29
AT5G17810.1 | Symbols: WOX12 | WUSCHEL related homeobox 12 | chr...   124   9e-29
AT3G03660.2 | Symbols: WOX11 | WUSCHEL related homeobox 11 | chr...   123   1e-28
AT3G03660.1 | Symbols: WOX11 | WUSCHEL related homeobox 11 | chr...   123   1e-28
AT2G33880.1 | Symbols: WOX9, HB-3, STIP | homeobox-3 | chr2:1434...   100   9e-22
AT5G45980.1 | Symbols: WOX8, STPL | WUSCHEL related homeobox 8 |...    90   2e-18
AT2G01500.1 | Symbols: PFS2, WOX6, HOS9 | Homeodomain-like super...    59   3e-09
AT3G18010.1 | Symbols: WOX1 | WUSCHEL related homeobox 1 | chr3:...    59   5e-09
AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | Homeodomain-like superf...    57   2e-08
AT5G59340.1 | Symbols: WOX2 | WUSCHEL related homeobox 2 | chr5:...    56   2e-08
AT2G28610.1 | Symbols: PRS, WOX3, PRS1 | Homeodomain-like superf...    56   3e-08
AT4G35550.1 | Symbols: HB-4, WOX13, ATWOX13 | WUSCHEL related ho...    56   3e-08
AT3G11260.1 | Symbols: WOX5 | WUSCHEL related homeobox 5 | chr3:...    54   1e-07
AT1G46480.1 | Symbols: WOX4 | WUSCHEL related homeobox 4 | chr1:...    52   3e-07
AT5G05770.1 | Symbols: WOX7 | WUSCHEL related homeobox 7 | chr5:...    52   4e-07
AT1G20700.1 | Symbols: WOX14, ATWOX14 | WUSCHEL related homeobox...    52   4e-07

>AT5G17810.2 | Symbols: WOX12 | WUSCHEL related homeobox 12 |
          chr5:5880576-5882602 REVERSE LENGTH=268
          Length = 268

 Score =  124 bits (310), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 55/65 (84%), Positives = 59/65 (90%)

Query: 22 HGCSSEKSEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVF 81
          H  SS  +EPVR+RW+PKPEQILILESIFNSG VNPPKDETVRIRK+LEKFG VGDANVF
Sbjct: 8  HSPSSTSTEPVRARWSPKPEQILILESIFNSGTVNPPKDETVRIRKMLEKFGAVGDANVF 67

Query: 82 YWFQN 86
          YWFQN
Sbjct: 68 YWFQN 72



 Score = 97.4 bits (241), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 54/62 (87%)

Query: 217 GYITVFINGIATELQGGLIDMKTMFGEDVMLVHSSGVPVPTNEFGFLMQSLQHGESYILV 276
           G++TVFING+  E+  G IDMKTMFG+D +L+HSSG+P+PT+EFGFLM SLQHG++Y LV
Sbjct: 205 GFMTVFINGVPMEVTKGAIDMKTMFGDDSVLLHSSGLPLPTDEFGFLMHSLQHGQTYFLV 264

Query: 277 PK 278
           P+
Sbjct: 265 PR 266


>AT5G17810.1 | Symbols: WOX12 | WUSCHEL related homeobox 12 |
          chr5:5880576-5882602 REVERSE LENGTH=268
          Length = 268

 Score =  124 bits (310), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 55/65 (84%), Positives = 59/65 (90%)

Query: 22 HGCSSEKSEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVF 81
          H  SS  +EPVR+RW+PKPEQILILESIFNSG VNPPKDETVRIRK+LEKFG VGDANVF
Sbjct: 8  HSPSSTSTEPVRARWSPKPEQILILESIFNSGTVNPPKDETVRIRKMLEKFGAVGDANVF 67

Query: 82 YWFQN 86
          YWFQN
Sbjct: 68 YWFQN 72



 Score = 97.4 bits (241), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 54/62 (87%)

Query: 217 GYITVFINGIATELQGGLIDMKTMFGEDVMLVHSSGVPVPTNEFGFLMQSLQHGESYILV 276
           G++TVFING+  E+  G IDMKTMFG+D +L+HSSG+P+PT+EFGFLM SLQHG++Y LV
Sbjct: 205 GFMTVFINGVPMEVTKGAIDMKTMFGDDSVLLHSSGLPLPTDEFGFLMHSLQHGQTYFLV 264

Query: 277 PK 278
           P+
Sbjct: 265 PR 266


>AT3G03660.2 | Symbols: WOX11 | WUSCHEL related homeobox 11 |
          chr3:889515-892162 REVERSE LENGTH=297
          Length = 297

 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 68/86 (79%), Gaps = 2/86 (2%)

Query: 1  MEDHQGQKDPNTKNNNAPSPHHGCSSEKSEPVRSRWTPKPEQILILESIFNSGMVNPPKD 60
          M+  Q    P   + + PS   G +S  +EPVRSRW+PKPEQILILESIF+SGMVNPPK+
Sbjct: 1  MDQEQTPHSPTRHSRSPPSSASGSTS--AEPVRSRWSPKPEQILILESIFHSGMVNPPKE 58

Query: 61 ETVRIRKLLEKFGTVGDANVFYWFQN 86
          ETVRIRK+LEKFG VGDANVFYWFQN
Sbjct: 59 ETVRIRKMLEKFGAVGDANVFYWFQN 84



 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/62 (72%), Positives = 53/62 (85%)

Query: 217 GYITVFINGIATELQGGLIDMKTMFGEDVMLVHSSGVPVPTNEFGFLMQSLQHGESYILV 276
           G ITVFING+ TE+  G IDMK  FGED++LVHSSGVP+PT+EFGFLM SLQHGE+Y LV
Sbjct: 234 GAITVFINGVPTEVTRGGIDMKATFGEDLVLVHSSGVPLPTDEFGFLMHSLQHGEAYFLV 293

Query: 277 PK 278
           P+
Sbjct: 294 PR 295


>AT3G03660.1 | Symbols: WOX11 | WUSCHEL related homeobox 11 |
          chr3:889515-892162 REVERSE LENGTH=268
          Length = 268

 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 68/86 (79%), Gaps = 2/86 (2%)

Query: 1  MEDHQGQKDPNTKNNNAPSPHHGCSSEKSEPVRSRWTPKPEQILILESIFNSGMVNPPKD 60
          M+  Q    P   + + PS   G +S  +EPVRSRW+PKPEQILILESIF+SGMVNPPK+
Sbjct: 1  MDQEQTPHSPTRHSRSPPSSASGSTS--AEPVRSRWSPKPEQILILESIFHSGMVNPPKE 58

Query: 61 ETVRIRKLLEKFGTVGDANVFYWFQN 86
          ETVRIRK+LEKFG VGDANVFYWFQN
Sbjct: 59 ETVRIRKMLEKFGAVGDANVFYWFQN 84



 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/62 (72%), Positives = 53/62 (85%)

Query: 217 GYITVFINGIATELQGGLIDMKTMFGEDVMLVHSSGVPVPTNEFGFLMQSLQHGESYILV 276
           G ITVFING+ TE+  G IDMK  FGED++LVHSSGVP+PT+EFGFLM SLQHGE+Y LV
Sbjct: 205 GAITVFINGVPTEVTRGGIDMKATFGEDLVLVHSSGVPLPTDEFGFLMHSLQHGEAYFLV 264

Query: 277 PK 278
           P+
Sbjct: 265 PR 266


>AT2G33880.1 | Symbols: WOX9, HB-3, STIP | homeobox-3 |
           chr2:14341639-14343597 REVERSE LENGTH=378
          Length = 378

 Score =  100 bits (250), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 60/90 (66%), Gaps = 9/90 (10%)

Query: 4   HQGQKDPNTKNNNAPSPHH-------GCSSEKSEPVRSRWTPKPEQILILESIFNSGMVN 56
           HQ Q D N+     PS  H       GC  E+S   + RW PKPEQI ILE+IFNSGMVN
Sbjct: 19  HQWQHDINSPL--LPSASHRSSPFSSGCEVERSPEPKPRWNPKPEQIRILEAIFNSGMVN 76

Query: 57  PPKDETVRIRKLLEKFGTVGDANVFYWFQN 86
           PP++E  RIR  L+++G VGDANVFYWFQN
Sbjct: 77  PPREEIRRIRAQLQEYGQVGDANVFYWFQN 106



 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 40/58 (68%)

Query: 219 ITVFINGIATELQGGLIDMKTMFGEDVMLVHSSGVPVPTNEFGFLMQSLQHGESYILV 276
           I VFIN +  E+  G  +++  FGE+V+L++S+G P+ T+E+G  +  LQHG SY L+
Sbjct: 321 IRVFINEMELEVSSGPFNVRDAFGEEVVLINSAGQPIVTDEYGVALHPLQHGASYYLI 378


>AT5G45980.1 | Symbols: WOX8, STPL | WUSCHEL related homeobox 8 |
           chr5:18648921-18650698 FORWARD LENGTH=325
          Length = 325

 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 39/62 (62%), Positives = 49/62 (79%)

Query: 25  SSEKSEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWF 84
           SS++    + RW PKPEQI ILESIFNSG +NPP++E  RIR  L+++G +GDANVFYWF
Sbjct: 45  SSDRIPDPKPRWNPKPEQIRILESIFNSGTINPPREEIQRIRIRLQEYGQIGDANVFYWF 104

Query: 85  QN 86
           QN
Sbjct: 105 QN 106



 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 38/58 (65%)

Query: 219 ITVFINGIATELQGGLIDMKTMFGEDVMLVHSSGVPVPTNEFGFLMQSLQHGESYILV 276
           +TVFIN +  E+  GL ++K  FG D +L++S G P+ T+EFG   Q LQ+G  Y L+
Sbjct: 268 MTVFINEMPIEVVSGLFNVKAAFGNDAVLINSFGQPILTDEFGVTYQPLQNGAIYYLI 325


>AT2G01500.1 | Symbols: PFS2, WOX6, HOS9 | Homeodomain-like
           superfamily protein | chr2:224470-225997 REVERSE
           LENGTH=271
          Length = 271

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 11/81 (13%)

Query: 6   GQKDPNTKNNNAPSPHHGCSSEKSEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRI 65
           G+ D + + NN P+               RW P PEQI  LE ++ SG   P  ++  +I
Sbjct: 43  GEHDIDERKNNIPAA-----------ATLRWNPTPEQITTLEELYRSGTRTPTTEQIQQI 91

Query: 66  RKLLEKFGTVGDANVFYWFQN 86
              L K+G +   NVFYWFQN
Sbjct: 92  ASKLRKYGRIEGKNVFYWFQN 112


>AT3G18010.1 | Symbols: WOX1 | WUSCHEL related homeobox 1 |
           chr3:6161155-6163183 REVERSE LENGTH=350
          Length = 350

 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 32/55 (58%)

Query: 32  VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQN 86
           V SRW P P+Q+ +LE ++  G   P  D   +I   L ++G +   NVFYWFQN
Sbjct: 73  VSSRWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQN 127


>AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | Homeodomain-like
          superfamily protein | chr2:7809100-7810671 REVERSE
          LENGTH=292
          Length = 292

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 34 SRWTPKPEQILILESIF-NSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQN 86
          +RWTP  EQI IL+ ++ N+ + +P  D+  +I   L +FG +   NVFYWFQN
Sbjct: 37 TRWTPTTEQIKILKELYYNNAIRSPTADQIQKITARLRQFGKIEGKNVFYWFQN 90


>AT5G59340.1 | Symbols: WOX2 | WUSCHEL related homeobox 2 |
          chr5:23933408-23934627 REVERSE LENGTH=260
          Length = 260

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%)

Query: 34 SRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQN 86
          SRW P  +QI +LE+++  G+  P  D+  +I   L  +G +   NVFYWFQN
Sbjct: 13 SRWNPTKDQITLLENLYKEGIRTPSADQIQQITGRLRAYGHIEGKNVFYWFQN 65


>AT2G28610.1 | Symbols: PRS, WOX3, PRS1 | Homeodomain-like
          superfamily protein | chr2:12262115-12263286 FORWARD
          LENGTH=244
          Length = 244

 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%)

Query: 34 SRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQN 86
          +RW P PEQ++ILE ++ SG+  P   +  +I   L  +G +   NVFYWFQN
Sbjct: 7  TRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQN 59


>AT4G35550.1 | Symbols: HB-4, WOX13, ATWOX13 | WUSCHEL related
           homeobox 13 | chr4:16875814-16877167 REVERSE LENGTH=268
          Length = 268

 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%)

Query: 32  VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQN 86
            R RWTP P Q+ ILE IF+ G   P K +   I + L + G + + NV+ WFQN
Sbjct: 96  ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQHGQIAEQNVYNWFQN 150


>AT3G11260.1 | Symbols: WOX5 | WUSCHEL related homeobox 5 |
          chr3:3527606-3528263 FORWARD LENGTH=182
          Length = 182

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query: 35 RWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQN 86
          RW P  EQ+ IL  +F +G+  P  D+  +I   L  +G +   NVFYWFQN
Sbjct: 24 RWNPTVEQLKILTDLFRAGLRTPTTDQIQKISTELSFYGKIESKNVFYWFQN 75


>AT1G46480.1 | Symbols: WOX4 | WUSCHEL related homeobox 4 |
           chr1:17236903-17237953 REVERSE LENGTH=251
          Length = 251

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%)

Query: 28  KSEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQN 86
           ++ P  +RW P  EQI ILE ++  GM  P   +   I   L K+G +   NVFYWFQN
Sbjct: 83  ETHPGGTRWNPTQEQIGILEMLYKGGMRTPNAQQIEHITLQLGKYGKIEGKNVFYWFQN 141


>AT5G05770.1 | Symbols: WOX7 | WUSCHEL related homeobox 7 |
          chr5:1734487-1734855 FORWARD LENGTH=122
          Length = 122

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 30/52 (57%)

Query: 35 RWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQN 86
          RW P  EQ+ +L  +F +G+  P  D+  +I   L  +G +   NVFYWFQN
Sbjct: 29 RWNPTVEQVKLLTDLFKAGLRTPSTDQIQKISMELSFYGKIESKNVFYWFQN 80


>AT1G20700.1 | Symbols: WOX14, ATWOX14 | WUSCHEL related homeobox 14
           | chr1:7182558-7183866 FORWARD LENGTH=211
          Length = 211

 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 33/67 (49%)

Query: 20  PHHGCSSEKSEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDAN 79
           P    SS      R RWTP   Q+ ILESI++ G   P +     I   L + G + + N
Sbjct: 80  PMGASSSSHRISTRHRWTPTSTQLQILESIYDEGSGTPNRRRIREIATELSEHGQITETN 139

Query: 80  VFYWFQN 86
           V+ WFQN
Sbjct: 140 VYNWFQN 146