Miyakogusa Predicted Gene

Lj1g3v3976000.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3976000.1 Non Chatacterized Hit- tr|I1MW66|I1MW66_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.27788
PE,57.09,0,Ribonuclease H-like,Ribonuclease H-like domain;
HRDC-like,HRDC-like; 3'-5' exonuclease,3'-5' exonucl,CUFF.31712.1
         (721 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G35910.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...   666   0.0  
AT1G54440.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...   601   e-172
AT1G54440.2 | Symbols:  | Polynucleotidyl transferase, ribonucle...   601   e-172
AT2G32415.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...   225   7e-59
AT2G32415.2 | Symbols:  | Polynucleotidyl transferase, ribonucle...   225   8e-59
AT2G25910.2 | Symbols:  | 3'-5' exonuclease domain-containing pr...    51   2e-06
AT2G25910.1 | Symbols:  | 3'-5' exonuclease domain-containing pr...    51   2e-06

>AT5G35910.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H fold protein with HRDC domain | chr5:14029871-14035405
           REVERSE LENGTH=870
          Length = 870

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/717 (50%), Positives = 447/717 (62%), Gaps = 99/717 (13%)

Query: 21  IPSNDDFHFYYKFNEFKRPLEEIAMRTQSMLTRIGSSEHIWGRGSAFPGDIDDAY--EWV 78
           IP++ DFHFYY F+EFKRP++EI   +QS L  IG SE +WG+   FPGD+DD Y  +W+
Sbjct: 43  IPTSRDFHFYYNFDEFKRPIDEITGTSQSTLATIGDSEQVWGKSMKFPGDVDDVYAEDWL 102

Query: 79  VNANXX------XXXXXXXXXXXXXXXXXXXXXXXXXXNGV----GRKKKSKGASCLELE 128
            N N                                  +G     G+KKK  G     + 
Sbjct: 103 CNVNDELIERFDVSVDEFQRIRKKEKEIGRSVVADDGDDGFQMVYGKKKKPVGNV---VT 159

Query: 129 GLDLENGTG------LELKDKAS----KVSFHEPTISKPQYRYNLEVDNANKPFQHVLLE 178
           G    NG G      +  +DK S    KV FH PTI KPQ  YN+ V+NAN PF+HV LE
Sbjct: 160 GSAAVNGGGSVIDVKMAERDKNSSGKAKVPFHVPTIKKPQEEYNILVNNANLPFEHVWLE 219

Query: 179 KSDDGQRFIHPLEKLSVLDFVDKDLENLVPVKPPPLECTPFKLVEDVKGLKELATKLYSV 238
           +S+D  R +HPLEK SVLDFVDKD+  + PVKP PLE TPFK V++VK LKEL  KL SV
Sbjct: 220 RSEDDLRAMHPLEKFSVLDFVDKDVNEMEPVKPLPLEQTPFKFVQEVKDLKELVAKLRSV 279

Query: 239 NEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRNHVGPYLREVFKDPKKKKVLH 298
            EFAVDLEHNQYRSFQGLTCLMQISTRTED+IVDT KLR H+GPYLRE+FKDPKKKKV+H
Sbjct: 280 EEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVMH 339

Query: 299 GANRDIVWLQRDFGIYVCNMFDTGQASRVLKLERYSLQHLLQHYCGVTANKEYQNADWRV 358
           GA+RDI+WLQRDFGIYVCN+FDTGQASRVL LER SL+ LLQH+CGVTANKEYQNADWR+
Sbjct: 340 GADRDIIWLQRDFGIYVCNLFDTGQASRVLNLERNSLEFLLQHFCGVTANKEYQNADWRI 399

Query: 359 RPLPDVMLRYGREDTHYLLYIYDLMRIELYALPKDSESSDNPLLEVYKRSYDICMQLYEK 418
           RPLP+ M RY REDTHYLLYIYDL+++EL  + KD   +D+PLLEVYKRSYD+C QLYEK
Sbjct: 400 RPLPEEMTRYAREDTHYLLYIYDLIKLELQRMAKDDAHTDSPLLEVYKRSYDVCTQLYEK 459

Query: 419 ELLTEDSYLRIKGLLGAGFNAQQLAIVSGLCEWRDTVARADDESTGYILPNKIILEIAKQ 478
           ELLTE+SYL + GL  AGFNA QLAIV+GLCEWRD +ARA+DESTGY+LPNK++LEIAK+
Sbjct: 460 ELLTENSYLHVYGLQAAGFNAAQLAIVAGLCEWRDFIARAEDESTGYVLPNKVLLEIAKE 519

Query: 479 MPVITSNLRRLVGKSRLPYAERNLDIIVNIVRHSMQNATAFEEAAQRLXXXXXXXXXXXX 538
           MP     LRR++ KS+ PY ERN+D +V+++R SMQ+  AFE AA  L            
Sbjct: 520 MPDSVGKLRRML-KSKHPYIERNVDSVVSVIRQSMQHYAAFESAALSLK----------- 567

Query: 539 XXXXXXXXDGTEAPGSHTPNLEVECAEKGCSGNENAISVDISEMSLISSDLEEYFEDEDL 598
                                                  D+S  +++  ++E   E +DL
Sbjct: 568 ---------------------------------------DVSPGNVMDKNIEPISEKKDL 588

Query: 599 QGQELIKSDFLTSELPCSSLTVLKKNGKDANVGAPSTAKGNG------------ANGQVL 646
                   D  +  L  +S  +  ++ +D  +GA +T +G G            A  ++ 
Sbjct: 589 H-----TGDVASPSLKENSSQL--ESTRDLIMGAANTNEGRGLGSGLFGSAKVSAAVRIS 641

Query: 647 KKPMGAFDATVMGNSASE---RXXXXXXXXXXLEQIRSSANLPSGSFLGNSDKSTST 700
           KKP     A ++GN+AS+   R          LEQIRSS NL   SF      S ST
Sbjct: 642 KKPSSGLGA-LLGNAASKKKSRTDEKVKEDVKLEQIRSSVNLSFHSFTEKVPDSKST 697


>AT1G54440.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H fold protein with HRDC domain | chr1:20323284-20327931
           FORWARD LENGTH=637
          Length = 637

 Score =  601 bits (1550), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 272/382 (71%), Positives = 326/382 (85%), Gaps = 1/382 (0%)

Query: 145 SKVSFHEPTISKPQYRYNLEVDNANKPFQHVLLEKSDDGQRFIHPLEKLSVLDFVDKDLE 204
           ++V FH PT++KPQ  Y + VDNAN PF+HVLLEKS+DG RFIHPLE+LSV+DFVD++L 
Sbjct: 41  AEVPFHIPTLTKPQEEYKILVDNANNPFEHVLLEKSEDGLRFIHPLEELSVMDFVDRNLS 100

Query: 205 NLVPVKPPPLECTPFKLVEDVKGLKELATKLYSVNEFAVDLEHNQYRSFQGLTCLMQIST 264
            + PVKP PLE TPFKLVE+VK L++LA  L SV EFAVDLEHNQYR+FQGLTCLMQIST
Sbjct: 101 EMRPVKPLPLEETPFKLVEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTCLMQIST 160

Query: 265 RTEDFIVDTLKLRNHVGPYLREVFKDPKKKKVLHGANRDIVWLQRDFGIYVCNMFDTGQA 324
           RTED+IVD  KL +H+GPYLRE+FKDPKKKKV+HGA+RDI+WLQRDFGIYVCN+FDTGQA
Sbjct: 161 RTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQA 220

Query: 325 SRVLKLERYSLQHLLQHYCGVTANKEYQNADWRVRPLPDVMLRYGREDTHYLLYIYDLMR 384
           SRVLKLER SL+ LL+HYCGV ANKEYQ ADWR+RPLPDVM RY REDTHYLLYIYD+MR
Sbjct: 221 SRVLKLERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMR 280

Query: 385 IELYALPKDSESSDNPLLEVYKRSYDICMQLYEKELLTEDSYLRIKGLLGAGFNAQQLAI 444
           +EL+ + K+ E SD+PL+EVYKRSYD+CMQLYEKEL T DSYL + G+     NA QL+I
Sbjct: 281 MELHTMAKEDEQSDSPLVEVYKRSYDVCMQLYEKELWTRDSYLHVYGVQTGNLNAVQLSI 340

Query: 445 VSGLCEWRDTVARADDESTGYILPNKIILEIAKQMPVITSNLRRLVGKSRLPYAERNLDI 504
           V+GLCEWRD +ARADDESTGY+LPNK + +IAK+MP++ + LRRL+ KS+LPY ERN D 
Sbjct: 341 VAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEMPIVVAQLRRLL-KSKLPYLERNFDA 399

Query: 505 IVNIVRHSMQNATAFEEAAQRL 526
           +++++R SMQNA AFE   Q L
Sbjct: 400 VISVIRRSMQNAAAFEPVVQSL 421


>AT1G54440.2 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H fold protein with HRDC domain | chr1:20323284-20327931
           FORWARD LENGTH=639
          Length = 639

 Score =  601 bits (1550), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 272/382 (71%), Positives = 326/382 (85%), Gaps = 1/382 (0%)

Query: 145 SKVSFHEPTISKPQYRYNLEVDNANKPFQHVLLEKSDDGQRFIHPLEKLSVLDFVDKDLE 204
           ++V FH PT++KPQ  Y + VDNAN PF+HVLLEKS+DG RFIHPLE+LSV+DFVD++L 
Sbjct: 41  AEVPFHIPTLTKPQEEYKILVDNANNPFEHVLLEKSEDGLRFIHPLEELSVMDFVDRNLS 100

Query: 205 NLVPVKPPPLECTPFKLVEDVKGLKELATKLYSVNEFAVDLEHNQYRSFQGLTCLMQIST 264
            + PVKP PLE TPFKLVE+VK L++LA  L SV EFAVDLEHNQYR+FQGLTCLMQIST
Sbjct: 101 EMRPVKPLPLEETPFKLVEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTCLMQIST 160

Query: 265 RTEDFIVDTLKLRNHVGPYLREVFKDPKKKKVLHGANRDIVWLQRDFGIYVCNMFDTGQA 324
           RTED+IVD  KL +H+GPYLRE+FKDPKKKKV+HGA+RDI+WLQRDFGIYVCN+FDTGQA
Sbjct: 161 RTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQA 220

Query: 325 SRVLKLERYSLQHLLQHYCGVTANKEYQNADWRVRPLPDVMLRYGREDTHYLLYIYDLMR 384
           SRVLKLER SL+ LL+HYCGV ANKEYQ ADWR+RPLPDVM RY REDTHYLLYIYD+MR
Sbjct: 221 SRVLKLERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMR 280

Query: 385 IELYALPKDSESSDNPLLEVYKRSYDICMQLYEKELLTEDSYLRIKGLLGAGFNAQQLAI 444
           +EL+ + K+ E SD+PL+EVYKRSYD+CMQLYEKEL T DSYL + G+     NA QL+I
Sbjct: 281 MELHTMAKEDEQSDSPLVEVYKRSYDVCMQLYEKELWTRDSYLHVYGVQTGNLNAVQLSI 340

Query: 445 VSGLCEWRDTVARADDESTGYILPNKIILEIAKQMPVITSNLRRLVGKSRLPYAERNLDI 504
           V+GLCEWRD +ARADDESTGY+LPNK + +IAK+MP++ + LRRL+ KS+LPY ERN D 
Sbjct: 341 VAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEMPIVVAQLRRLL-KSKLPYLERNFDA 399

Query: 505 IVNIVRHSMQNATAFEEAAQRL 526
           +++++R SMQNA AFE   Q L
Sbjct: 400 VISVIRRSMQNAAAFEPVVQSL 421


>AT2G32415.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H fold protein with HRDC domain | chr2:13761307-13765421
           REVERSE LENGTH=891
          Length = 891

 Score =  225 bits (574), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 149/357 (41%), Positives = 192/357 (53%), Gaps = 35/357 (9%)

Query: 156 KPQYRYN-LEVDNANKPFQHVLL--------EKSDDGQRFIHPLEKLSVLDFVDKDLENL 206
           KPQ+ +  +  DN+   F+H+ L        EK  +G    HP E    +   +  +E  
Sbjct: 50  KPQFGFKRVLADNSYSEFKHLKLVDASSSSLEKPSNG----HPYETEITVLLENPQIEFG 105

Query: 207 VPVKPPPLECT-PFKLVEDVKGLKELATKLYSVNEFAVDLEHNQYRSFQGLTCLMQISTR 265
                  LE +  +  VE    LKELA  L     FAVD E +  RSF G T L+QIST 
Sbjct: 106 FLRGECSLEMSDSYVWVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTH 165

Query: 266 TEDFIVDTLKLRNHVGPYLREVFKDPKKKKVLHGANRDIVWLQRDFGIYVCNMFDTGQAS 325
            EDF+VDT+ L + V   LR VF DP   KV HGA+ D++WLQRDF IYV NMFDT +A 
Sbjct: 166 EEDFLVDTIALHD-VMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKAC 224

Query: 326 RVLKLERYSLQHLLQHYCGVTANKEYQNADWRVRPLPDVMLRYGREDTHYLLYIYDLMRI 385
            VL   + SL +LL+  CGV  NK  Q  DWR RPL + M+RY R D HYLLYI D +  
Sbjct: 225 EVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTT 284

Query: 386 ELYALPKDSESSDNP---LLEVYKRSYDICMQLYEKELLTED-------SYLRIKGLLGA 435
           EL  L  DS S D+    LLE  +RS   C+QLY KE  TED       S +  + L G 
Sbjct: 285 ELKQLATDSSSPDDRFHFLLEASRRSNMTCLQLYTKE--TEDFPGSAASSSIIYRHLNGH 342

Query: 436 G------FNAQQLAIVSGLCEWRDTVARADDESTGYILPNKIILEIAKQMPVITSNL 486
           G       NA++L  V  LC WRD + R  DEST Y+L ++ I+ ++ + P  T  +
Sbjct: 343 GDKSNISLNAEEL--VRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEI 397


>AT2G32415.2 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H fold protein with HRDC domain | chr2:13761386-13765421
           REVERSE LENGTH=872
          Length = 872

 Score =  225 bits (574), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 149/357 (41%), Positives = 192/357 (53%), Gaps = 35/357 (9%)

Query: 156 KPQYRYN-LEVDNANKPFQHVLL--------EKSDDGQRFIHPLEKLSVLDFVDKDLENL 206
           KPQ+ +  +  DN+   F+H+ L        EK  +G    HP E    +   +  +E  
Sbjct: 50  KPQFGFKRVLADNSYSEFKHLKLVDASSSSLEKPSNG----HPYETEITVLLENPQIEFG 105

Query: 207 VPVKPPPLECT-PFKLVEDVKGLKELATKLYSVNEFAVDLEHNQYRSFQGLTCLMQISTR 265
                  LE +  +  VE    LKELA  L     FAVD E +  RSF G T L+QIST 
Sbjct: 106 FLRGECSLEMSDSYVWVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTH 165

Query: 266 TEDFIVDTLKLRNHVGPYLREVFKDPKKKKVLHGANRDIVWLQRDFGIYVCNMFDTGQAS 325
            EDF+VDT+ L + V   LR VF DP   KV HGA+ D++WLQRDF IYV NMFDT +A 
Sbjct: 166 EEDFLVDTIALHD-VMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKAC 224

Query: 326 RVLKLERYSLQHLLQHYCGVTANKEYQNADWRVRPLPDVMLRYGREDTHYLLYIYDLMRI 385
            VL   + SL +LL+  CGV  NK  Q  DWR RPL + M+RY R D HYLLYI D +  
Sbjct: 225 EVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTT 284

Query: 386 ELYALPKDSESSDNP---LLEVYKRSYDICMQLYEKELLTED-------SYLRIKGLLGA 435
           EL  L  DS S D+    LLE  +RS   C+QLY KE  TED       S +  + L G 
Sbjct: 285 ELKQLATDSSSPDDRFHFLLEASRRSNMTCLQLYTKE--TEDFPGSAASSSIIYRHLNGH 342

Query: 436 G------FNAQQLAIVSGLCEWRDTVARADDESTGYILPNKIILEIAKQMPVITSNL 486
           G       NA++L  V  LC WRD + R  DEST Y+L ++ I+ ++ + P  T  +
Sbjct: 343 GDKSNISLNAEEL--VRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEI 397


>AT2G25910.2 | Symbols:  | 3'-5' exonuclease domain-containing
           protein / K homology domain-containing protein / KH
           domain-containing protein | chr2:11049379-11051997
           REVERSE LENGTH=342
          Length = 342

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 19/149 (12%)

Query: 254 QGLTCLMQISTRTEDFIVDTLKLRNHVGPYLREVFKDPKKKKVLHGANRDIVWLQRDFGI 313
            G  C+MQI+     ++VD ++    +    +   +     KV+H   RD   L   FGI
Sbjct: 70  HGKLCIMQIAFSNAIYLVDVIEGGEVIMKACKPALESNYITKVIHDCKRDSEALYFQFGI 129

Query: 314 YVCNMFDTG--------QASRVLKLERY-SLQHLLQ--HYCGVTANKEYQ--------NA 354
            + N+ DT         Q  R   L+ Y S   LL    YCG++  ++ +          
Sbjct: 130 RLHNVVDTQIAYSLIEEQEGRRRPLDDYISFVSLLADPRYCGISYEEKEEVRVLMRQDPK 189

Query: 355 DWRVRPLPDVMLRYGREDTHYLLYIYDLM 383
            W  RP+ ++M+R   +D  +LLY+Y  M
Sbjct: 190 FWTYRPMTELMIRAAADDVRFLLYLYHKM 218


>AT2G25910.1 | Symbols:  | 3'-5' exonuclease domain-containing
           protein / K homology domain-containing protein / KH
           domain-containing protein | chr2:11049379-11051997
           REVERSE LENGTH=341
          Length = 341

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 19/149 (12%)

Query: 254 QGLTCLMQISTRTEDFIVDTLKLRNHVGPYLREVFKDPKKKKVLHGANRDIVWLQRDFGI 313
            G  C+MQI+     ++VD ++    +    +   +     KV+H   RD   L   FGI
Sbjct: 70  HGKLCIMQIAFSNAIYLVDVIEGGEVIMKACKPALESNYITKVIHDCKRDSEALYFQFGI 129

Query: 314 YVCNMFDTG--------QASRVLKLERY-SLQHLLQ--HYCGVTANKEYQ--------NA 354
            + N+ DT         Q  R   L+ Y S   LL    YCG++  ++ +          
Sbjct: 130 RLHNVVDTQIAYSLIEEQEGRRRPLDDYISFVSLLADPRYCGISYEEKEEVRVLMRQDPK 189

Query: 355 DWRVRPLPDVMLRYGREDTHYLLYIYDLM 383
            W  RP+ ++M+R   +D  +LLY+Y  M
Sbjct: 190 FWTYRPMTELMIRAAADDVRFLLYLYHKM 218