Miyakogusa Predicted Gene

Lj1g3v3975340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3975340.1 Non Chatacterized Hit- tr|A5XEM2|A5XEM2_MEDTR
Putative RNA binding protein OS=Medicago truncatula
GN,89.52,0,HEAT_2,NULL; HEAT_REPEAT,HEAT, type 2; ARM
repeat,Armadillo-type fold; no description,Armadillo-like,CUFF.31654.1
         (712 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G19820.1 | Symbols: emb2734 | ARM repeat superfamily protein ...   961   0.0  
AT4G27640.1 | Symbols:  | ARM repeat superfamily protein | chr4:...   166   7e-41

>AT5G19820.1 | Symbols: emb2734 | ARM repeat superfamily protein |
           chr5:6695731-6701247 REVERSE LENGTH=1116
          Length = 1116

 Score =  961 bits (2483), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/707 (67%), Positives = 545/707 (77%), Gaps = 6/707 (0%)

Query: 5   QVALILGPDSSHLESLISNFISTGNEQRSQAETLFNLCKQTHPDSLILRLAQLLHSSPNP 64
           Q+A++LG DS+  E+LIS+ +S+ NEQRS AE+LFNL KQ++PD+L L+LA LL  SP+P
Sbjct: 12  QLAMVLGSDSAPFETLISHLMSSSNEQRSSAESLFNLAKQSNPDTLSLKLAHLLQLSPHP 71

Query: 65  ETRTMATILLRRHLTRHHDDSFLWPHXXXXXXXXXXXXXXXXXHREPQKSISKKLCDTVS 124
           E R MA +LLR+ LTR  DD++LWP                    E  KSISKK+CDTVS
Sbjct: 72  EGRAMAAVLLRKLLTR--DDAYLWPRLSLSTQSSLKSSMLYCIQHEEAKSISKKICDTVS 129

Query: 125 XXXXXXXXXXXXXXXXXXXXXFQWVTSPDPRLQEIALLVFAQLAHYIGETLVPQLTTLQS 184
                                FQ VTS  P+LQE A L+ AQL+ Y+GETL P +  L  
Sbjct: 130 ELASGILPENGWPELLPFV--FQCVTSVTPKLQESAFLILAQLSQYVGETLTPHIKELHG 187

Query: 185 VFLRCLSS-STSSDVRIAALAASVNFVQCLSSPSDRDRLQDLLPLMMQTLTEALNSXXXX 243
           VFL+CLSS S SSDV+IAAL A ++FVQCL++ ++RDR QD+LP M++TLTE+LN+    
Sbjct: 188 VFLQCLSSNSASSDVKIAALNAVISFVQCLANSTERDRFQDVLPAMIRTLTESLNNGNEA 247

Query: 244 XXXXXXXXXXXXXXXXPRFLRRQIVDVVGSMLQVAEAPSLEEGTRHLAIEFVVTLAEARE 303
                           PRFLRRQ+VD+VGSMLQ+AEA SLEE TRHLAIEF+VTLAEARE
Sbjct: 248 TAQEALELLIELAGTEPRFLRRQLVDIVGSMLQIAEADSLEESTRHLAIEFLVTLAEARE 307

Query: 304 RAPGMMRKLPQFIQRLFGVLMNLLLDIEDEPAWHAAETEDEVAGETSNYGFGQECLDRLS 363
           RAPGM+RKLPQFI RLF VLM +L DIED+PAW++AETEDE AGETSNY  GQECLDRL+
Sbjct: 308 RAPGMVRKLPQFIDRLFAVLMKMLEDIEDDPAWYSAETEDEDAGETSNYSMGQECLDRLA 367

Query: 364 ISLGGNTIVPVASELLPAYLAAPEWXXXXXXXXXXXXXXEGCSKVMIKNLEQVLSMILNS 423
           ISLGGNTIVPVA +   AYLAA EW              EGCSKVMIKNL+QV+SM+L+ 
Sbjct: 368 ISLGGNTIVPVAYQQFSAYLAASEWQKHHASLIALAQIAEGCSKVMIKNLDQVVSMVLSQ 427

Query: 424 FHDPHPRVRWAAINAIGQLSTDLGPDLQVKYHHLVLPALAGAMDDFQNPRVQAHVASAVL 483
           F  PHPRVRWAAINAIGQLSTDLGPDLQ ++H  VLPALA AMDDFQNPRVQAH ASAVL
Sbjct: 428 FQSPHPRVRWAAINAIGQLSTDLGPDLQNQHHERVLPALAAAMDDFQNPRVQAHAASAVL 487

Query: 484 NFTENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEQFQKYYDAVM 543
           NF+ENCTP+IL+PYLDG+VSKLLVLLQNGKQMVQEGALTALASVADSSQE FQKYYD VM
Sbjct: 488 NFSENCTPEILSPYLDGVVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDTVM 547

Query: 544 PYLKAILMNANDKTNRMLRAKAMECISLVGMAVGKEKFRDDAKQVMDVLMSLQQSQLEAD 603
           PYLK ILMNA DK+ RMLRAK+MECISLVGMAVGK++F++DA+QVM+VLMSLQ SQ+EAD
Sbjct: 548 PYLKTILMNATDKSKRMLRAKSMECISLVGMAVGKDRFKEDARQVMEVLMSLQGSQMEAD 607

Query: 604 DPTASYMLQAWARLCKCLGQDFLPYMNFVMPPLLQSAQLKPDVTIT-XXXXXXXXXXXXX 662
           DP  SYMLQAWARLCKCLGQDFLPYM  VMPPLLQSAQLKPDVTIT              
Sbjct: 608 DPITSYMLQAWARLCKCLGQDFLPYMKVVMPPLLQSAQLKPDVTITSADSEDEAEDSDDE 667

Query: 663 XIETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQV 709
            +ETI LGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQV
Sbjct: 668 SMETIILGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQV 714


>AT4G27640.1 | Symbols:  | ARM repeat superfamily protein |
           chr4:13798013-13802976 REVERSE LENGTH=1048
          Length = 1048

 Score =  166 bits (419), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 166/701 (23%), Positives = 296/701 (42%), Gaps = 45/701 (6%)

Query: 17  LESLISNFISTGNEQRSQAETLFNLCKQTHPDSLIL-RLAQLLHSSPNPETRTMATILLR 75
           LE L+  F+   N+ R QAE   +  K+   D  ++  L Q L ++  P  R +A +LLR
Sbjct: 5   LELLLIQFLMPDNDARRQAE---DQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLR 61

Query: 76  RHLTRHHDDSFLWPHXXXXXXXXXXXXXXXXXHREPQKSISKKLCDTVSXXXXXXXXXXX 135
           + +T H      W                     E    + +   + VS           
Sbjct: 62  KRITGH------WAKLSPQLKQHVKQSLIESITVENSPPVRRASANVVSVVAKYAVPAGE 115

Query: 136 XXXXXXXXXXFQWVTSPDPRLQEIALLVFAQLAHYIGETLVPQLTTLQSVFLRCLSSSTS 195
                     FQ   S     +E+AL++F+ L   IG T  P    LQ++ L+C+   +S
Sbjct: 116 WPDLLTFL--FQCSQSAQEDHREVALILFSSLTETIGNTFRPYFADLQALLLKCMQDESS 173

Query: 196 SDVRIAALAASVNFVQCLSSPSDRDRLQDLLPLMMQTLTEALNSXXXXXXXXXXXXXXXX 255
           S VR+AAL A  +F++  +   +  + +D +P ++    + + S                
Sbjct: 174 SRVRVAALKAVGSFLEFTNDGDEVVKFRDFIPSILDVSRKCIASGEEDVAILAFEIFDEL 233

Query: 256 XXXXPRFLRRQIVDVVGSMLQVAEAPSLEEGTRHLAIEFVVTLAEARERAPGMMRKLPQF 315
                  L   +  +V   L+V+   +LE  TRH AI+ V  LA+ +  +    + +   
Sbjct: 234 IESPAPLLGDSVKAIVQFSLEVSCNQNLESSTRHQAIQIVSWLAKYKYNSLKKHKLVIPI 293

Query: 316 IQRLFGVLMNLLLDIEDEPAWHAAETEDEVAGETSNYGFGQECLDRLSISLGGNTIVPVA 375
           +Q     +M  LL    +         D  + E          +D L+++L  +  +PV 
Sbjct: 294 LQ-----VMCPLLAESSDQEDDDDLAPDRASAEV---------IDTLAMNLPKHVFLPVL 339

Query: 376 SELLPAYLAAPEWXXXXXXXXXXXXXXEGCSKVMIKNLEQVLSMILNSFHDPHPRVRWAA 435
            E    +  +                 EGC  +M + L+ VL+++L +  DP   VR AA
Sbjct: 340 -EFASVHCQSTNLKFREASVTALGVISEGCFDLMKEKLDTVLNIVLGALRDPELVVRGAA 398

Query: 436 INAIGQLSTDLGPDLQVKYHHLVLPALAGAMDDFQNPRVQAHVASAVLNFTENCTPDILT 495
             AIGQ +  L P++ + ++  VLP L  A++D  +  V+     A+  F EN   +I+ 
Sbjct: 399 SFAIGQFAEHLQPEI-LSHYQSVLPCLLIAIED-TSEEVKEKSHYALAAFCENMGEEIV- 455

Query: 496 PYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEQFQKYYDAVMPYLKAILMNAND 555
           P LD ++ KL+  L+N  + +QE  ++A+ SVA ++++ F  Y + V+  +K  ++   D
Sbjct: 456 PLLDHLMGKLMAALENSPRNLQETCMSAIGSVAAAAEQAFNPYAERVLELMKFFMVLTKD 515

Query: 556 KTNRMLRAKAMECISLVGMAVGKEKFRDDAKQVMDVLMS---LQQSQLEADDPTASYMLQ 612
           +  R  RA++ E + +V M+VG++         +D  +S   L+ S+L        Y   
Sbjct: 516 EDLRA-RARSTELVGIVAMSVGRKGMEAILPPFIDAAISGFELEFSELR------EYTHG 568

Query: 613 AWARLCKCLGQDFLPYMNFVMPPLLQSAQLKPDVTITXXXXXXXXXXXXXXIETITLGD- 671
            ++ + + L   F  Y+  VMP +  S  L     +               + +    D 
Sbjct: 569 FFSNVAEILDDTFAQYLPRVMPLVFASCNLDDGSAVDIDESDDENVNDFGGVSSDDDADD 628

Query: 672 ----KRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQ 708
               + I ++T VL+EKA A   L  +A   K  F P++++
Sbjct: 629 EPRVRNISVRTGVLDEKAAATQALGLFALHTKSAFAPYLEE 669