Miyakogusa Predicted Gene
- Lj1g3v3975270.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3975270.2 Non Chatacterized Hit- tr|J3LTX5|J3LTX5_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB03G4,47.52,3e-18,seg,NULL,CUFF.31663.2
(264 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G18130.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 120 1e-27
AT3G03870.2 | Symbols: | unknown protein; BEST Arabidopsis thal... 104 5e-23
AT5G18130.2 | Symbols: | unknown protein; BEST Arabidopsis thal... 75 7e-14
AT3G03870.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 60 2e-09
>AT5G18130.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G03870.2); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
- 339 (source: NCBI BLink). | chr5:5995634-5997165
FORWARD LENGTH=280
Length = 280
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 106/169 (62%), Gaps = 20/169 (11%)
Query: 108 ENKFADMKMDSPKSSPRVLFPPPLDAGALKFEDK-----GEAMEVMVSPRRKVENEMATM 162
E +FADMK+DSP + F PL + D GE+ + ++ + +++++
Sbjct: 120 ETEFADMKIDSPAAR----FTSPLPQNDERHSDSEGGLGGESYDEIMGSEVEESSDLSS- 174
Query: 163 DCDREEVDPTDG--FNFWKWSLTGVGAICSFGVAAA--TICVLVFG--SQQKNKFHQNHK 216
++EVD +G N WK L G+GAICSFGVAAA TICV G S + ++N
Sbjct: 175 ---KKEVDWDEGERTNLWKKGLNGIGAICSFGVAAAAATICVFFLGHNSSIQGGRNKNQI 231
Query: 217 IQFQIYTDD-KRIKQVVQQATKLNEAIAATRGIPLSRAHITYGGYYEAL 264
++FQIY+DD KR+ +VV+ ATKLNEAI+ +G+P++RA I++GGYY+AL
Sbjct: 232 LRFQIYSDDNKRMNEVVKHATKLNEAISVMKGLPVARAQISFGGYYDAL 280
>AT3G03870.2 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G18130.1); Has 47 Blast hits to 47 proteins in
13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi
- 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr3:995520-997180 FORWARD
LENGTH=266
Length = 266
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 125/252 (49%), Gaps = 43/252 (17%)
Query: 39 MNYFYCTS-----PKSRDSSTTQLLHDDPIQF------VENTEDDHVGDNSDTTSEKIKA 87
M+YF C S PK+ ++++ +Q V + ++ + +N D +
Sbjct: 32 MDYFLCPSTKDPLPKTESPPRSKVVPKKILQVPIAWEAVLDQDNTKIPNNPDLEPDPHP- 90
Query: 88 VVVEADEQETLSVSQ-------FFLQLENKFADMKMDSPKSSPRVLFP-PPLDAGALKFE 139
+ D + TLS F + + +FADMK+D P R+ P P +D A K
Sbjct: 91 ---DPDSKPTLSTDSVSSPRVSFKIMKDTEFADMKIDPPA---RITSPLPQIDDAASKPS 144
Query: 140 DKGEAMEVMVSPRRKVENEMATMDCDREEVDPTDGFNFWKWSLTGVGAICSFGVAAA--T 197
D E + + + V E E + N WK L G+GAICSFGVAAA T
Sbjct: 145 DL-EGGDDLRDKKEVVLEEEDEDGSGGERL------NLWKAGLNGIGAICSFGVAAAAAT 197
Query: 198 ICVLVFGSQQ----KNKFHQNHKIQFQIYTDD-KRIKQVVQQATKLNEAIAATRGIPLSR 252
+CV G KNK N ++FQIY+DD KR+K+VV ATKLNEAI +G+P+ R
Sbjct: 198 VCVFFLGHNNIKICKNK---NQMLRFQIYSDDNKRMKEVVNHATKLNEAIFGMKGVPVVR 254
Query: 253 AHITYGGYYEAL 264
A I++GG+Y+ L
Sbjct: 255 AQISFGGHYDGL 266
>AT5G18130.2 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G03870.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr5:5995634-5996389 FORWARD LENGTH=251
Length = 251
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 76/135 (56%), Gaps = 19/135 (14%)
Query: 108 ENKFADMKMDSPKSSPRVLFPPPLDAGALKFEDK-----GEAMEVMVSPRRKVENEMATM 162
E +FADMK+DSP + F PL + D GE+ + ++ + +++++
Sbjct: 120 ETEFADMKIDSPAAR----FTSPLPQNDERHSDSEGGLGGESYDEIMGSEVEESSDLSS- 174
Query: 163 DCDREEVDPTDG--FNFWKWSLTGVGAICSFGV--AAATICVLVFG--SQQKNKFHQNHK 216
++EVD +G N WK L G+GAICSFGV AAATICV G S + ++N
Sbjct: 175 ---KKEVDWDEGERTNLWKKGLNGIGAICSFGVAAAAATICVFFLGHNSSIQGGRNKNQI 231
Query: 217 IQFQIYTDDKRIKQV 231
++FQIY+DD ++K +
Sbjct: 232 LRFQIYSDDNKVKNL 246
>AT3G03870.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G18130.1); Has 41 Blast hits to 41 proteins in
11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi
- 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr3:995520-996224 FORWARD
LENGTH=234
Length = 234
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 96/212 (45%), Gaps = 36/212 (16%)
Query: 39 MNYFYCTS-----PKSRDSSTTQLLHDDPIQF------VENTEDDHVGDNSDTTSEKIKA 87
M+YF C S PK+ ++++ +Q V + ++ + +N D +
Sbjct: 32 MDYFLCPSTKDPLPKTESPPRSKVVPKKILQVPIAWEAVLDQDNTKIPNNPDLEPDPHP- 90
Query: 88 VVVEADEQETLSVSQ-------FFLQLENKFADMKMDSPKSSPRVLFP-PPLDAGALKFE 139
+ D + TLS F + + +FADMK+D P R+ P P +D A K
Sbjct: 91 ---DPDSKPTLSTDSVSSPRVSFKIMKDTEFADMKIDPPA---RITSPLPQIDDAASKPS 144
Query: 140 DKGEAMEVMVSPRRKVENEMATMDCDREEVDPTDGFNFWKWSLTGVGAICSFGV--AAAT 197
D E + + + V E E + N WK L G+GAICSFGV AAAT
Sbjct: 145 DL-EGGDDLRDKKEVVLEEEDEDGSGGERL------NLWKAGLNGIGAICSFGVAAAAAT 197
Query: 198 ICVLVFGSQQ-KNKFHQNHKIQFQIYTDDKRI 228
+CV G K ++N ++FQIY+DD ++
Sbjct: 198 VCVFFLGHNNIKICKNKNQMLRFQIYSDDNKV 229