Miyakogusa Predicted Gene

Lj1g3v3975270.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3975270.1 Non Chatacterized Hit- tr|J3LTX5|J3LTX5_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB03G4,44.55,7e-18,seg,NULL,CUFF.31663.1
         (280 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G18130.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   120   8e-28
AT3G03870.2 | Symbols:  | unknown protein; BEST Arabidopsis thal...   107   8e-24
AT5G18130.2 | Symbols:  | unknown protein; BEST Arabidopsis thal...    79   5e-15
AT3G03870.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    67   2e-11

>AT5G18130.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G03870.2); Has 1807 Blast hits to 1807 proteins
           in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
           Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
           - 339 (source: NCBI BLink). | chr5:5995634-5997165
           FORWARD LENGTH=280
          Length = 280

 Score =  120 bits (302), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/263 (34%), Positives = 136/263 (51%), Gaps = 40/263 (15%)

Query: 36  FDMNYFYCTSPKS--------RDSSTTTTQLLHDDPILLFVPHIGNKVENTEDDDHVGDN 87
           FD +YF C    S        + SS   TQLL        +P     +   +D DH    
Sbjct: 40  FDSDYFICPIQDSVGKTEFLHQRSSVVPTQLLQ-------IPITWEPLSPVDDKDH---- 88

Query: 88  SADTTSEKIKGAVVVEADQQETVDTVSVSQ--FLLQLENNFADMKMDSPKSSPTVLFPPP 145
                  K       E D +   ++    +  F    E  FADMK+DSP +  T   P P
Sbjct: 89  ------NKYLDPDFSEPDPELLTESFPSPRITFKKSKETEFADMKIDSPAARFTS--PLP 140

Query: 146 LDDAGAMKSEDK--GEAMEVMVSPRMKVENEMTTMDCVR-EEGDHTDGFNFWKWSLTGVG 202
            +D     SE    GE+ + ++   ++  +++++   V  +EG+ T   N WK  L G+G
Sbjct: 141 QNDERHSDSEGGLGGESYDEIMGSEVEESSDLSSKKEVDWDEGERT---NLWKKGLNGIG 197

Query: 203 AICSFGVAAA--TICVLVFG--SKQRNKFHQNHKIQFQIYTDD-KRIKQVVQQATKLNKA 257
           AICSFGVAAA  TICV   G  S  +   ++N  ++FQIY+DD KR+ +VV+ ATKLN+A
Sbjct: 198 AICSFGVAAAAATICVFFLGHNSSIQGGRNKNQILRFQIYSDDNKRMNEVVKHATKLNEA 257

Query: 258 IAATRGIPLSRAHITYGGFYEAL 280
           I+  +G+P++RA I++GG+Y+AL
Sbjct: 258 ISVMKGLPVARAQISFGGYYDAL 280


>AT3G03870.2 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G18130.1); Has 47 Blast hits to 47 proteins in
           13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi
           - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr3:995520-997180 FORWARD
           LENGTH=266
          Length = 266

 Score =  107 bits (267), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 86/258 (33%), Positives = 132/258 (51%), Gaps = 38/258 (14%)

Query: 38  MNYFYCTS---PKSRDSSTTTTQLLHDDPILLFVPHIGNKVENTEDDDHVGDNSADTTSE 94
           M+YF C S   P  +  S   ++++     +L VP     V +        DN+    + 
Sbjct: 32  MDYFLCPSTKDPLPKTESPPRSKVVPKK--ILQVPIAWEAVLDQ-------DNTKIPNNP 82

Query: 95  KIKGAVVVEADQQETVDTVSVSQ----FLLQLENNFADMKMDSPKSSPTVLFPPPLDDAG 150
            ++     + D + T+ T SVS     F +  +  FADMK+D P    + L  P +DDA 
Sbjct: 83  DLEPDPHPDPDSKPTLSTDSVSSPRVSFKIMKDTEFADMKIDPPARITSPL--PQIDDAA 140

Query: 151 AMKSE-DKGEAMEVMVSPRMKVENEMTTMDCVREEGDHTDGFNFWKWSLTGVGAICSFGV 209
           +  S+ + G+ +          + +   ++   E+G   +  N WK  L G+GAICSFGV
Sbjct: 141 SKPSDLEGGDDLR---------DKKEVVLEEEDEDGSGGERLNLWKAGLNGIGAICSFGV 191

Query: 210 AAA--TICVLVFGSKQ----RNKFHQNHKIQFQIYTDD-KRIKQVVQQATKLNKAIAATR 262
           AAA  T+CV   G       +NK   N  ++FQIY+DD KR+K+VV  ATKLN+AI   +
Sbjct: 192 AAAAATVCVFFLGHNNIKICKNK---NQMLRFQIYSDDNKRMKEVVNHATKLNEAIFGMK 248

Query: 263 GIPLSRAHITYGGFYEAL 280
           G+P+ RA I++GG Y+ L
Sbjct: 249 GVPVVRAQISFGGHYDGL 266


>AT5G18130.2 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G03870.1); Has 35333 Blast hits to 34131
           proteins in 2444 species: Archae - 798; Bacteria -
           22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
           - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
           chr5:5995634-5996389 FORWARD LENGTH=251
          Length = 251

 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 106/229 (46%), Gaps = 39/229 (17%)

Query: 36  FDMNYFYCTSPKS--------RDSSTTTTQLLHDDPILLFVPHIGNKVENTEDDDHVGDN 87
           FD +YF C    S        + SS   TQLL        +P     +   +D DH    
Sbjct: 40  FDSDYFICPIQDSVGKTEFLHQRSSVVPTQLLQ-------IPITWEPLSPVDDKDH---- 88

Query: 88  SADTTSEKIKGAVVVEADQQETVDTVSVSQ--FLLQLENNFADMKMDSPKSSPTVLFPPP 145
                  K       E D +   ++    +  F    E  FADMK+DSP +  T   P P
Sbjct: 89  ------NKYLDPDFSEPDPELLTESFPSPRITFKKSKETEFADMKIDSPAARFTS--PLP 140

Query: 146 LDDAGAMKSEDK--GEAMEVMVSPRMKVENEMTTMDCVR-EEGDHTDGFNFWKWSLTGVG 202
            +D     SE    GE+ + ++   ++  +++++   V  +EG+ T   N WK  L G+G
Sbjct: 141 QNDERHSDSEGGLGGESYDEIMGSEVEESSDLSSKKEVDWDEGERT---NLWKKGLNGIG 197

Query: 203 AICSFGV--AAATICVLVFG--SKQRNKFHQNHKIQFQIYTDDKRIKQV 247
           AICSFGV  AAATICV   G  S  +   ++N  ++FQIY+DD ++K +
Sbjct: 198 AICSFGVAAAAATICVFFLGHNSSIQGGRNKNQILRFQIYSDDNKVKNL 246


>AT3G03870.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G18130.1); Has 41 Blast hits to 41 proteins in
           11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi
           - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr3:995520-996224 FORWARD
           LENGTH=234
          Length = 234

 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 104/218 (47%), Gaps = 31/218 (14%)

Query: 38  MNYFYCTS---PKSRDSSTTTTQLLHDDPILLFVPHIGNKVENTEDDDHVGDNSADTTSE 94
           M+YF C S   P  +  S   ++++     +L VP     V +        DN+    + 
Sbjct: 32  MDYFLCPSTKDPLPKTESPPRSKVVPKK--ILQVPIAWEAVLDQ-------DNTKIPNNP 82

Query: 95  KIKGAVVVEADQQETVDTVSVSQ----FLLQLENNFADMKMDSPKSSPTVLFPPPLDDAG 150
            ++     + D + T+ T SVS     F +  +  FADMK+D P    + L  P +DDA 
Sbjct: 83  DLEPDPHPDPDSKPTLSTDSVSSPRVSFKIMKDTEFADMKIDPPARITSPL--PQIDDAA 140

Query: 151 AMKSE-DKGEAMEVMVSPRMKVENEMTTMDCVREEGDHTDGFNFWKWSLTGVGAICSFGV 209
           +  S+ + G+ +          + +   ++   E+G   +  N WK  L G+GAICSFGV
Sbjct: 141 SKPSDLEGGDDLR---------DKKEVVLEEEDEDGSGGERLNLWKAGLNGIGAICSFGV 191

Query: 210 --AAATICVLVFGSKQ-RNKFHQNHKIQFQIYTDDKRI 244
             AAAT+CV   G    +   ++N  ++FQIY+DD ++
Sbjct: 192 AAAAATVCVFFLGHNNIKICKNKNQMLRFQIYSDDNKV 229