Miyakogusa Predicted Gene

Lj1g3v3975170.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3975170.1 tr|B0UFE3|B0UFE3_METS4 Pyridoxamine 5'-phosphate
oxidase-related FMN-binding OS=Methylobacterium
sp.,32.22,9e-19,SUBFAMILY NOT NAMED,NULL; CREG1 PROTEIN,NULL; no
description,FMN-binding split barrel; Pyrid_oxidase,CUFF.31645.1
         (317 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G03890.1 | Symbols:  | FMN binding | chr3:999667-1001996 REVE...   390   e-109
AT3G03890.2 | Symbols:  | FMN binding | chr3:999837-1001996 REVE...   364   e-101
AT3G21140.1 | Symbols:  | Pyridoxamine 5'-phosphate oxidase fami...    91   8e-19
AT1G51560.1 | Symbols:  | Pyridoxamine 5'-phosphate oxidase fami...    91   1e-18

>AT3G03890.1 | Symbols:  | FMN binding | chr3:999667-1001996 REVERSE
           LENGTH=321
          Length = 321

 Score =  390 bits (1001), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/333 (62%), Positives = 252/333 (75%), Gaps = 34/333 (10%)

Query: 1   MKTMV----TPLM--RISPS--FRQNAHKALPFSPTRHSSSPNSFTFISAIPTLSISMAA 52
           MK++V    TPL+  R+ P     + +  A+ FS  R   SP             ++MA+
Sbjct: 1   MKSLVAHFSTPLITARLVPRCIIHRASISAVSFSTVRRRFSP-------------LTMAS 47

Query: 53  SSQSTAPAVPSGDVGMKKDEVFQLIQA------------QVRTVLDHSLRGVLSTFSKKY 100
           ++QS++ AV  G  G    +VF+LIQA            ++RTVL+ S+ G+LSTFS+KY
Sbjct: 48  AAQSSSQAVSYGS-GNSDTDVFKLIQAHEEKAARLSPVEEIRTVLNGSICGMLSTFSQKY 106

Query: 101 EGYPSGSMVDFACDANGCPILAVSDLAVHTKDLTANPKCSLLVARDPEDRTDLVITLHGD 160
           EGYPSGSMVDFACDA+G PILAVS LAVHTKDL ANPKCSLL+ARDPEDRT L ITLHGD
Sbjct: 107 EGYPSGSMVDFACDADGSPILAVSSLAVHTKDLLANPKCSLLIARDPEDRTGLRITLHGD 166

Query: 161 AVSVPEKDKEAVRAAYLARHPNAFWVDFGDFQFVRIKPKTVRFVSGVATALLGSGEFDGD 220
           AV V EKD+ AVR+AYLA+HP AFWVDFGDF F+RI+PK VR+VSGVATA LGSGEF  +
Sbjct: 167 AVLVSEKDQAAVRSAYLAKHPKAFWVDFGDFSFMRIEPKVVRYVSGVATAFLGSGEFSKE 226

Query: 221 EYKSAKVDPVAQFSKPVASHMNKDHGEDTKVIVQHWTSVPVDFADILDLDCLGFNVKAGY 280
           EY++AKVDP+AQ++KPV SHMNKDH EDTK IV + TS+PV+ A +LDLD LGFNVKA  
Sbjct: 227 EYQAAKVDPIAQYAKPVTSHMNKDHEEDTKAIVHNITSIPVESALMLDLDSLGFNVKATL 286

Query: 281 QGDTFKLRVPFPRRAEDRKDVKTLIVEMLQAAR 313
           QG+TFKLRVPFPRRA+DRKDVKTLIVEMLQAA+
Sbjct: 287 QGNTFKLRVPFPRRAQDRKDVKTLIVEMLQAAK 319


>AT3G03890.2 | Symbols:  | FMN binding | chr3:999837-1001996 REVERSE
           LENGTH=305
          Length = 305

 Score =  364 bits (935), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/319 (61%), Positives = 238/319 (74%), Gaps = 34/319 (10%)

Query: 1   MKTMV----TPLM--RISPS--FRQNAHKALPFSPTRHSSSPNSFTFISAIPTLSISMAA 52
           MK++V    TPL+  R+ P     + +  A+ FS  R   SP             ++MA+
Sbjct: 1   MKSLVAHFSTPLITARLVPRCIIHRASISAVSFSTVRRRFSP-------------LTMAS 47

Query: 53  SSQSTAPAVPSGDVGMKKDEVFQLIQA------------QVRTVLDHSLRGVLSTFSKKY 100
           ++QS++ AV  G  G    +VF+LIQA            ++RTVL+ S+ G+LSTFS+KY
Sbjct: 48  AAQSSSQAVSYGS-GNSDTDVFKLIQAHEEKAARLSPVEEIRTVLNGSICGMLSTFSQKY 106

Query: 101 EGYPSGSMVDFACDANGCPILAVSDLAVHTKDLTANPKCSLLVARDPEDRTDLVITLHGD 160
           EGYPSGSMVDFACDA+G PILAVS LAVHTKDL ANPKCSLL+ARDPEDRT L ITLHGD
Sbjct: 107 EGYPSGSMVDFACDADGSPILAVSSLAVHTKDLLANPKCSLLIARDPEDRTGLRITLHGD 166

Query: 161 AVSVPEKDKEAVRAAYLARHPNAFWVDFGDFQFVRIKPKTVRFVSGVATALLGSGEFDGD 220
           AV V EKD+ AVR+AYLA+HP AFWVDFGDF F+RI+PK VR+VSGVATA LGSGEF  +
Sbjct: 167 AVLVSEKDQAAVRSAYLAKHPKAFWVDFGDFSFMRIEPKVVRYVSGVATAFLGSGEFSKE 226

Query: 221 EYKSAKVDPVAQFSKPVASHMNKDHGEDTKVIVQHWTSVPVDFADILDLDCLGFNVKAGY 280
           EY++AKVDP+AQ++KPV SHMNKDH EDTK IV + TS+PV+ A +LDLD LGFNVKA  
Sbjct: 227 EYQAAKVDPIAQYAKPVTSHMNKDHEEDTKAIVHNITSIPVESALMLDLDSLGFNVKATL 286

Query: 281 QGDTFKLRVPFPRRAEDRK 299
           QG+TFKLRVPFPRRA+DRK
Sbjct: 287 QGNTFKLRVPFPRRAQDRK 305


>AT3G21140.1 | Symbols:  | Pyridoxamine 5'-phosphate oxidase family
           protein | chr3:7409696-7412086 REVERSE LENGTH=387
          Length = 387

 Score = 91.3 bits (225), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 117/240 (48%), Gaps = 35/240 (14%)

Query: 81  VRTVLDHS----LRGVLSTFSKKYEGYPSGSMVDFACDANGCPILAVSDLAVHTKDLTAN 136
           VR +L+ +    L  V+S    + EGYP GS+VDFA D  G PI   S LA+HT++L   
Sbjct: 147 VRNLLEQARFAHLCTVMSKMHHRREGYPFGSLVDFAPDRMGHPIFLFSPLAIHTRNLLNE 206

Query: 137 PKCSLLVA-RDPEDRTDLVITLHGDAVSVPEKDKEAVRAAYLARHPNAFWVDFGDFQFVR 195
           P+CSL+V        ++  +TL GD   + E ++E     Y+A+HP+     +G+F + R
Sbjct: 207 PRCSLVVQIPGWSGLSNARVTLFGDVYPLSEDEQEWAHKQYIAKHPHGPSEQWGNFHYFR 266

Query: 196 IKPKT-VRFVSGVAT-ALLGSGEFDGDEYKSAKVDP--------VAQFSKPVASHMNKDH 245
           ++  + + F+ G  T A +   E++G +     VD          A FSKP+   ++   
Sbjct: 267 MQNISDIYFIGGFGTVAWVDVKEYEGLQPDKIAVDGGERNLKELNAIFSKPLRELLS--- 323

Query: 246 GEDTKVIVQHWTSVPVDFADILDLDCLGFNVKAGYQGDTFKL-RVPFPRRAEDRKDVKTL 304
                      T   VD A ++ +D  G +V+   QG  F + R+ F    E+   V+TL
Sbjct: 324 -----------TESEVDDAALISIDSKGIDVRV-RQGAQFNIQRLAF----EEGHGVETL 367


>AT1G51560.1 | Symbols:  | Pyridoxamine 5'-phosphate oxidase family
           protein | chr1:19119900-19121859 REVERSE LENGTH=392
          Length = 392

 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 119/242 (49%), Gaps = 39/242 (16%)

Query: 81  VRTVLDHS----LRGVLSTFSKKYEGYPSGSMVDFACDANGCPILAVSDLAVHTKDLTAN 136
           VR +++ +    L  V+S    + EGYP GS+VDFA D  G PI + S LA+HT+++ A 
Sbjct: 151 VRNLMEQARFAHLCTVMSKMHHRREGYPFGSLVDFAPDPMGHPIFSFSPLAIHTRNILAE 210

Query: 137 PKCSLLVARDPED-RTDLVITLHGDAVSVPEKDKEAVRAAYLARHPNAFWVDFGDFQFVR 195
           P+C+L+V        ++  +TL GD   +PE+ +E     Y+ +H       +G+F + R
Sbjct: 211 PRCTLVVQIPGWSCLSNARVTLFGDVYPLPEEQQEWAHKQYMLKHHQGPSQQWGNFHYFR 270

Query: 196 IKPKT-VRFVSGVAT-ALLGSGEF----------DGDEYKSAKVDPVAQFSKPVASHMNK 243
           ++  + + F+ G  T A +   E+          DG E    +++ +  FSKP+   ++ 
Sbjct: 271 MQNISDIYFIGGFGTVAWINVNEYETLQPDKIAVDGGEQNLKELNAI--FSKPLRELLSS 328

Query: 244 DHGEDTKVIVQHWTSVPVDFADILDLDCLGFNVKAGYQGDTFKL-RVPFPRRAEDRKDVK 302
           +                +D A I+ +D  G +++   QG  FK+ R+ F    E+   V+
Sbjct: 329 E--------------AELDDAAIISIDSKGIDIRV-RQGAQFKIQRLAF----EESHGVE 369

Query: 303 TL 304
           TL
Sbjct: 370 TL 371