Miyakogusa Predicted Gene
- Lj1g3v3975010.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3975010.1 Non Chatacterized Hit- tr|Q8LBH1|Q8LBH1_ARATH
Putative uncharacterized protein OS=Arabidopsis thalia,26.52,4e-18,no
description,Glycoside hydrolase-type carbohydrate-binding, subgroup;
seg,NULL; OS03G0158300 PROTE,CUFF.31624.1
(357 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G64770.1 | Symbols: NDF2, NDH45 | NDH-dependent cyclic electr... 398 e-111
AT1G64770.3 | Symbols: NDF2 | NDH-dependent cyclic electron flow... 307 9e-84
AT1G64770.2 | Symbols: NDF2, NDH45 | NDH-dependent cyclic electr... 305 4e-83
AT1G55370.2 | Symbols: NDF5 | NDH-dependent cyclic electron flow... 102 4e-22
AT1G55370.1 | Symbols: NDF5 | NDH-dependent cyclic electron flow... 55 7e-08
>AT1G64770.1 | Symbols: NDF2, NDH45 | NDH-dependent cyclic electron
flow 1 | chr1:24057549-24059415 FORWARD LENGTH=348
Length = 348
Score = 398 bits (1022), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/358 (58%), Positives = 259/358 (72%), Gaps = 12/358 (3%)
Query: 1 MASFLSLSL-PKLNLIKXXXXXXXXXXXXXXPEALNEKFGRKGIKFLESDNNIPIVELTV 59
MAS +S SL PK ++ E L +KFGRKGIKF ES NNIP+VEL V
Sbjct: 1 MASLISFSLLPKPKAVRSSISAPQTQTINT--EKLEDKFGRKGIKFSES-NNIPMVELKV 57
Query: 60 RNGSSLSLRIPDAHVTSYKPKVFWKDDGFEEVLYTVPATESGLYKAKGGIGLVLNEVLQP 119
RNGSSL L + DAHV SYKPKV+WKD+GFEEVLYTV ES +GG+G+V+ +P
Sbjct: 58 RNGSSLKLSLSDAHVLSYKPKVYWKDEGFEEVLYTVDGDES-----RGGVGVVIVNGEEP 112
Query: 120 GAKGVLPSTLEWNVVDIEFDSIDALQVELSCTSRFFDLTYVVTLYPVSMATAVIVKNKAP 179
+ S +W+V D + D+IDALQ+ELSCT+ D+TY+V+LYPVSMATA++VKN
Sbjct: 113 KGGSSVISGCDWSVKDTDSDAIDALQIELSCTAGVLDITYIVSLYPVSMATALVVKNNGR 172
Query: 180 KPVTLTNAILSHLRFKRRSGTAIQGLRRCSYISHPPLASPFQVLTPSEAMISEPPGWLSF 239
KPVTL I+S+LRFK+RSG IQGL+ CSY +PPL+SPF++L+PSEAM +E GW F
Sbjct: 173 KPVTLKPGIMSYLRFKKRSGAGIQGLKGCSYCPNPPLSSPFELLSPSEAMKAESSGW--F 230
Query: 240 GAEPEVSPGSWTQQGVPITLLENKMSRVYAAPPKERSKAFFNTPPSKYETIDQGRELCFR 299
G+E PG W + ITLLE KMSR+Y APP ER KA +NTPPSK+ETIDQGR L FR
Sbjct: 231 GSEEGEKPGIWAVEDSVITLLEKKMSRIYGAPPAERLKAVYNTPPSKFETIDQGRGLFFR 290
Query: 300 VIRMGFEDIYVSSPGSLSEKHGKD-YFVCTGPASILVPVTVNPGEEWRGAQVIEHDNL 356
+IR+GFE++YV SPGS+ +K+GK YFVCTGP S+LVPV V GE WRGA VIEHDNL
Sbjct: 291 MIRIGFEEMYVGSPGSMWDKYGKQHYFVCTGPTSMLVPVDVASGETWRGAMVIEHDNL 348
>AT1G64770.3 | Symbols: NDF2 | NDH-dependent cyclic electron flow 1
| chr1:24057549-24059405 FORWARD LENGTH=367
Length = 367
Score = 307 bits (786), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 166/296 (56%), Positives = 208/296 (70%), Gaps = 11/296 (3%)
Query: 1 MASFLSLSL-PKLNLIKXXXXXXXXXXXXXXPEALNEKFGRKGIKFLESDNNIPIVELTV 59
MAS +S SL PK ++ E L +KFGRKGIKF ES NNIP+VEL V
Sbjct: 1 MASLISFSLLPKPKAVRSSISAPQTQTINT--EKLEDKFGRKGIKFSES-NNIPMVELKV 57
Query: 60 RNGSSLSLRIPDAHVTSYKPKVFWKDDGFEEVLYTVPATESGLYKAKGGIGLVLNEVLQP 119
RNGSSL L + DAHV SYKPKV+WKD+GFEEVLYTV ES +GG+G+V+ +P
Sbjct: 58 RNGSSLKLSLSDAHVLSYKPKVYWKDEGFEEVLYTVDGDES-----RGGVGVVIVNGEEP 112
Query: 120 GAKGVLPSTLEWNVVDIEFDSIDALQVELSCTSRFFDLTYVVTLYPVSMATAVIVKNKAP 179
+ S +W+V D + D+IDALQ+ELSCT+ D+TY+V+LYPVSMATA++VKN
Sbjct: 113 KGGSSVISGCDWSVKDTDSDAIDALQIELSCTAGVLDITYIVSLYPVSMATALVVKNNGR 172
Query: 180 KPVTLTNAILSHLRFKRRSGTAIQGLRRCSYISHPPLASPFQVLTPSEAMISEPPGWLSF 239
KPVTL I+S+LRFK+RSG IQGL+ CSY +PPL+SPF++L+PSEAM +E GW F
Sbjct: 173 KPVTLKPGIMSYLRFKKRSGAGIQGLKGCSYCPNPPLSSPFELLSPSEAMKAESSGW--F 230
Query: 240 GAEPEVSPGSWTQQGVPITLLENKMSRVYAAPPKERSKAFFNTPPSKYETIDQGRE 295
G+E PG W + ITLLE KMSR+Y APP ER KA +NTPPSK+ETIDQ ++
Sbjct: 231 GSEEGEKPGIWAVEDSVITLLEKKMSRIYGAPPAERLKAVYNTPPSKFETIDQKKK 286
>AT1G64770.2 | Symbols: NDF2, NDH45 | NDH-dependent cyclic electron
flow 1 | chr1:24057549-24058565 FORWARD LENGTH=313
Length = 313
Score = 305 bits (780), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 166/293 (56%), Positives = 206/293 (70%), Gaps = 11/293 (3%)
Query: 1 MASFLSLSL-PKLNLIKXXXXXXXXXXXXXXPEALNEKFGRKGIKFLESDNNIPIVELTV 59
MAS +S SL PK ++ E L +KFGRKGIKF ES NNIP+VEL V
Sbjct: 1 MASLISFSLLPKPKAVRSSISAPQTQTINT--EKLEDKFGRKGIKFSES-NNIPMVELKV 57
Query: 60 RNGSSLSLRIPDAHVTSYKPKVFWKDDGFEEVLYTVPATESGLYKAKGGIGLVLNEVLQP 119
RNGSSL L + DAHV SYKPKV+WKD+GFEEVLYTV ES +GG+G+V+ +P
Sbjct: 58 RNGSSLKLSLSDAHVLSYKPKVYWKDEGFEEVLYTVDGDES-----RGGVGVVIVNGEEP 112
Query: 120 GAKGVLPSTLEWNVVDIEFDSIDALQVELSCTSRFFDLTYVVTLYPVSMATAVIVKNKAP 179
+ S +W+V D + D+IDALQ+ELSCT+ D+TY+V+LYPVSMATA++VKN
Sbjct: 113 KGGSSVISGCDWSVKDTDSDAIDALQIELSCTAGVLDITYIVSLYPVSMATALVVKNNGR 172
Query: 180 KPVTLTNAILSHLRFKRRSGTAIQGLRRCSYISHPPLASPFQVLTPSEAMISEPPGWLSF 239
KPVTL I+S+LRFK+RSG IQGL+ CSY +PPL+SPF++L+PSEAM +E GW F
Sbjct: 173 KPVTLKPGIMSYLRFKKRSGAGIQGLKGCSYCPNPPLSSPFELLSPSEAMKAESSGW--F 230
Query: 240 GAEPEVSPGSWTQQGVPITLLENKMSRVYAAPPKERSKAFFNTPPSKYETIDQ 292
G+E PG W + ITLLE KMSR+Y APP ER KA +NTPPSK+ETIDQ
Sbjct: 231 GSEEGEKPGIWAVEDSVITLLEKKMSRIYGAPPAERLKAVYNTPPSKFETIDQ 283
>AT1G55370.2 | Symbols: NDF5 | NDH-dependent cyclic electron flow 5
| chr1:20674852-20676071 FORWARD LENGTH=354
Length = 354
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 143/328 (43%), Gaps = 41/328 (12%)
Query: 32 EALNEKFGRKGIKFLESDNNIPIVELTVRNGSSLSLRIPDAHVTSYKPKVFWKDDGFEEV 91
E L +F G F E I L + NGSS ++ + +TSYK +V+ G E+
Sbjct: 63 EYLRREFSGHGATF-EDIGETCIARLKLDNGSSANVMLTRGMITSYKVRVW--HGGKVEL 119
Query: 92 LYTVPATESGLYKAKGGIGLVLNEVLQPGAKGVLPSTLEWNVVDIEFDSIDALQVELSCT 151
L+T E +GG+ +W + I DS D +Q+EL +
Sbjct: 120 LHTWVEQEEEEVVIRGGVSSAFRSSDSD-------EISDWRLQGISGDSKDCVQMELRRS 172
Query: 152 SRFF---DLTYVVTLYPVSMATAVIVKNKAPKPVTLTN-AILSHLRFKRRSGTAIQGLRR 207
+ +L +++L +++ + + NK P+ L +++S+L T GL
Sbjct: 173 DKKIKEIELKQIISLRENTLSIELSMTNKGISPIKLEGCSLVSYLTVSTPEATYAVGLEG 232
Query: 208 CSYISHPPLASPFQVLTPSEAMISEPPGWLSFGAEPEVSPGSWTQQGVPITLLENKMSRV 267
++ P F V+ + E PG FG E E ++ Q L +MSR+
Sbjct: 233 SDFVETTPFLPRFGVVQGEKE--EEKPG---FGGEEE---SNYKQ-------LNREMSRI 277
Query: 268 YAAPPKERSKAFFNTPPSKYETIDQGRELCFRVIRMGFEDIYVSSPGSLSEKHGKDYFVC 327
Y PK + ID+GR V R GFE++Y+ SPGS E + K +VC
Sbjct: 278 YTCAPK------------SFTVIDRGRRNSVVVGREGFEEVYMYSPGSRLESYTKSAYVC 325
Query: 328 TGPASILVPVTVNPGEEWRGAQVIEHDN 355
GP+S+L P+++ G WRG + + N
Sbjct: 326 IGPSSLLSPISLESGCVWRGVLHLHNPN 353
>AT1G55370.1 | Symbols: NDF5 | NDH-dependent cyclic electron flow 5
| chr1:20674852-20675857 FORWARD LENGTH=308
Length = 308
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 101/246 (41%), Gaps = 29/246 (11%)
Query: 32 EALNEKFGRKGIKFLESDNNIPIVELTVRNGSSLSLRIPDAHVTSYKPKVFWKDDGFEEV 91
E L +F G F E I L + NGSS ++ + +TSYK +V+ G E+
Sbjct: 63 EYLRREFSGHGATF-EDIGETCIARLKLDNGSSANVMLTRGMITSYKVRVW--HGGKVEL 119
Query: 92 LYTVPATESGLYKAKGGIGLVLNEVLQPGAKGVLPSTLEWNVVDIEFDSIDALQVELSCT 151
L+T E +GG+ +W + I DS D +Q+EL +
Sbjct: 120 LHTWVEQEEEEVVIRGGVSSAFRSSDSDEIS-------DWRLQGISGDSKDCVQMELRRS 172
Query: 152 SRF---FDLTYVVTLYPVSMATAVIVKNKAPKPVTLTN-AILSHLRFKRRSGTAIQGLRR 207
+ +L +++L +++ + + NK P+ L +++S+L T GL
Sbjct: 173 DKKIKEIELKQIISLRENTLSIELSMTNKGISPIKLEGCSLVSYLTVSTPEATYAVGLEG 232
Query: 208 CSYISHPPLASPFQVLTPSEAMISEPPGWLSFGAEPEVSPGSWTQQGVPITLLENKMSRV 267
++ P F V+ + E PG FG E E ++ Q L +MSR+
Sbjct: 233 SDFVETTPFLPRFGVVQGEKE--EEKPG---FGGEEE---SNYKQ-------LNREMSRI 277
Query: 268 YAAPPK 273
Y PK
Sbjct: 278 YTCAPK 283