Miyakogusa Predicted Gene

Lj1g3v3974960.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3974960.1 CUFF.31618.1
         (286 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02220.1 | Symbols:  | zinc finger (MYND type) family protein...   283   9e-77

>AT4G02220.1 | Symbols:  | zinc finger (MYND type) family protein /
           programmed cell death 2 C-terminal domain-containing
           protein | chr4:976728-978902 FORWARD LENGTH=418
          Length = 418

 Score =  283 bits (724), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 131/242 (54%), Positives = 170/242 (70%), Gaps = 5/242 (2%)

Query: 47  IGLAFEPENQWSLCRQYFPSKAGGIPAWLDPLNIPSGRSSVCDICGDPLLFLLQVYAPIV 106
           +G    P+  WS  RQ FP+ AGG+PAWLDP+N+PSG+S +CD+C +P+ F+LQ+YAP+ 
Sbjct: 54  LGFVESPKFAWSNLRQLFPNLAGGVPAWLDPVNLPSGKSILCDLCEEPMQFVLQLYAPLT 113

Query: 107 EEKCENTFHRMLFVFMCPSMTCLLRDQHEQCKRHPERPSRSVKVFRCQLPRVNPFYSSKH 166
           ++  E+ FHR LF+FMCPSM+CLLRDQHEQ KR PE+  RS KVFRCQLPR NPFYSS+ 
Sbjct: 114 DK--ESAFHRTLFLFMCPSMSCLLRDQHEQWKRAPEKAMRSTKVFRCQLPRANPFYSSEA 171

Query: 167 PTNDGSQKPAGSGAALCDWCGTWKGDKLCSSCKQVRYCSEKHQVMSWRSGHKIACQQMKV 226
           P +DG+ KP G GA LC WCGTWKGDKLCS CK  RYCS KHQ + WR GHK  CQQ++ 
Sbjct: 172 PKHDGTDKPLGHGAPLCTWCGTWKGDKLCSGCKNARYCSPKHQALHWRLGHKTECQQLRT 231

Query: 227 SSPV--CGPNRSGTTSLESHKVGSSNFMWPEYEIIIGDESESNRDVSEDNTLHNSLILRN 284
            S     GP  +G    E  KV S + +W E+ +I  DESE + ++S D+ +   L+ + 
Sbjct: 232 VSETSDSGPVNNGVAPTEKQKVASKS-LWKEFVLINEDESEYDTEMSGDDEVAKPLVSKR 290

Query: 285 RI 286
            +
Sbjct: 291 EV 292