Miyakogusa Predicted Gene

Lj1g3v3974780.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3974780.2 tr|B9GYG3|B9GYG3_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_646885
PE=4,84,2e-18,seg,NULL; no description,NULL,CUFF.31625.2
         (203 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05345.1 | Symbols:  | Chaperone DnaJ-domain superfamily prot...   126   1e-29
AT4G20130.1 | Symbols: PTAC14 | plastid transcriptionally active...   125   1e-29

>AT3G05345.1 | Symbols:  | Chaperone DnaJ-domain superfamily protein
           | chr3:1522449-1523847 REVERSE LENGTH=244
          Length = 244

 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/116 (58%), Positives = 82/116 (70%), Gaps = 5/116 (4%)

Query: 1   MIRRVIEAYRMLSNFSPSQIIERECLDPFDTPECEAFDLFVNELFCVGKACSNSCVERAP 60
           MIRR+I+AY ML+N+S S+IIE ECLDPFD PECEA D+FVNE+ CVGK CS  C E A 
Sbjct: 85  MIRRIIQAYEMLTNYSRSEIIEGECLDPFDHPECEALDVFVNEVLCVGKRCSYPCFETAS 144

Query: 61  HSFTYVSSTGTARASSQGRITKFNRLLDSVLEIAFLC---YPPSQRILLEELLDSV 113
           H F+   S+GTARA SQG    + R+  +V +    C     PSQRI+LEELLDSV
Sbjct: 145 HVFS-CDSSGTARAMSQGHGEDY-RVQSAVNQCPRNCIHYVTPSQRIILEELLDSV 198


>AT4G20130.1 | Symbols: PTAC14 | plastid transcriptionally active 14
           | chr4:10878914-10881697 FORWARD LENGTH=483
          Length = 483

 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 53/75 (70%), Positives = 64/75 (85%)

Query: 127 DPNLASTMRSQQQRALEFWEKNWHSGAPLKIKRLARDPQRFIWAVGIAQSRCINMQMRVG 186
           DP+L ST+R QQ+R L+FWEKNWHSG PLKIKRLA DP+RFIWAV +AQ+RCI+MQ RVG
Sbjct: 210 DPDLVSTIRQQQKRILDFWEKNWHSGVPLKIKRLAEDPERFIWAVSMAQTRCISMQTRVG 269

Query: 187 ALTQNANMLVPYAGL 201
           AL Q  NM++PYA +
Sbjct: 270 ALVQELNMMIPYADM 284