Miyakogusa Predicted Gene

Lj1g3v3964650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3964650.1 Non Chatacterized Hit- tr|I3T8T8|I3T8T8_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.21,0,HNH,HNH
endonuclease; HNH nucleases,HNH nuclease,CUFF.31585.1
         (317 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G23840.1 | Symbols:  | HNH endonuclease | chr2:10153982-10155...   312   2e-85

>AT2G23840.1 | Symbols:  | HNH endonuclease | chr2:10153982-10155600
           REVERSE LENGTH=284
          Length = 284

 Score =  312 bits (800), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 141/179 (78%), Positives = 163/179 (91%)

Query: 136 DGLSCFRGLVLDLAYRPVNVVCWKRAICLEFMEKADVLEYYEKTVNSPSGSFYIPAVLRV 195
           D LSCFRGLVLD++YRPVNVVCWKRAICLE+M+KADVLEYY++TV+SP+GSFYIPAVLRV
Sbjct: 99  DHLSCFRGLVLDISYRPVNVVCWKRAICLEYMDKADVLEYYDQTVSSPTGSFYIPAVLRV 158

Query: 196 PHLLQVVKRRIVKNNLSRKNILFRDHFTCQYCSSRENLTIDHVVPAALGGEWTWENLVTA 255
           PHLLQVVKRR VKN+LSRKNIL RD +TCQYCSSRENLTIDHV+P + GGEWTW+NLV A
Sbjct: 159 PHLLQVVKRRRVKNSLSRKNILLRDDYTCQYCSSRENLTIDHVMPVSRGGEWTWQNLVAA 218

Query: 256 CAKCNSKKGKKSLEEAKMKLNKVPKAPKEYDILAIPLTAAALRMLSKRKGTPEEWRQYL 314
           C++CNS+KG+K+ +EA MKL KVPK PK+YDI+AIPLT AA+RML   KG PEEWRQYL
Sbjct: 219 CSRCNSRKGQKTADEAHMKLLKVPKEPKDYDIVAIPLTNAAIRMLRSNKGMPEEWRQYL 277