Miyakogusa Predicted Gene

Lj1g3v3961390.5
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3961390.5 tr|A7STC1|A7STC1_NEMVE Predicted protein
(Fragment) OS=Nematostella vectensis GN=v1g130907 PE=3
SV=1,32.47,0.0000000000002,E3 UBIQUITIN LIGASE APC2,NULL;
CULLIN,NULL,CUFF.31583.5
         (241 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G04660.1 | Symbols: APC2 | anaphase-promoting complex/cycloso...   288   3e-78

>AT2G04660.1 | Symbols: APC2 | anaphase-promoting complex/cyclosome
           2 | chr2:1624933-1629039 FORWARD LENGTH=865
          Length = 865

 Score =  288 bits (736), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 149/205 (72%), Positives = 169/205 (82%), Gaps = 4/205 (1%)

Query: 11  QNKDSMDLDEKGKICNNVGDMDVDDECYNNHRLSGSSRRLVKNIGKVVLGLRSLGFTSMA 70
           Q  D MDLDEK +  N  G+MDVD+ C    RL     +LVKNIGKVV  LRS+GFTSMA
Sbjct: 204 QEDDCMDLDEKLRYKN--GEMDVDEGCSQGKRLGHD--KLVKNIGKVVRDLRSIGFTSMA 259

Query: 71  EDAYASAIFLLLKAKVYNVAGDDFRGSILQSIQRWIQAVPLQFLHALLVYIGDSVSYEST 130
           E+AYASAIFLLLKAKV+++AGDD+R S+L+SI+ WIQ VPLQFL+ALL Y+GDSVSY +T
Sbjct: 260 ENAYASAIFLLLKAKVHDLAGDDYRTSVLESIKEWIQTVPLQFLNALLSYLGDSVSYGTT 319

Query: 131 SSGLKSPLAPQPSSFCSGIDTPSEGLVRWKLRLGNFSYETLQNLRIAKLFEIIVDYPESS 190
           SSGL SPLA  PS   S + TPSEG+VRWKLRL  F+YETLQ+LRIAKLFEIIVDYPESS
Sbjct: 320 SSGLTSPLACCPSPSFSRVVTPSEGIVRWKLRLEYFAYETLQDLRIAKLFEIIVDYPESS 379

Query: 191 PAIEDLKLCLEYTGQHSKLVESFIS 215
           PAIEDLK CLEYTGQHSKLVESFIS
Sbjct: 380 PAIEDLKQCLEYTGQHSKLVESFIS 404